Sequence of DPV Sweet potato virus C

Sweet potato feathery mottle virus isolate CTB3-1 polyprotein gene, partial cds.

ACC No: EU809485

Dated: 2012-09-03 | Length: 1711 | CRC: -1012170154

                
ID   EU809485; SV 1; linear; genomic RNA; STD; VRL; 1711 BP.
XX
AC   EU809485;
XX
DT   30-DEC-2009 (Rel. 103, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Sweet potato feathery mottle virus isolate CTB3-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Sweet potato virus C
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1711
RX   DOI; 10.1094/PDIS-93-9-0933.
RX   AGRICOLA; IND44294830.
RA   Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA   Valkonen J.P.T.;
RT   "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT   Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT   Africa";
RL   Plant Dis. 93(9):933-939(2009).
XX
RN   [2]
RP   1-1711
RA   Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT   ;
RL   Submitted (09-JUN-2008) to the INSDC.
RL   Department of Applied Biology, University of Helsinki, PL 27
RL   Latokartanonkaari 7, Helsinki 00014, Finland
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1711
FT                   /organism="Sweet potato virus C"
FT                   /host="Ipomoea batatas (sweet potato)"
FT                   /strain="C"
FT                   /isolate="CTB3-1"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /db_xref="taxon:930881"
FT   CDS             <1. .1546
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D2CTJ9"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D2CTJ9"
FT                   /protein_id="ACJ01829.1"
FT                   /translation="LMVVLAVYYTLLKLGVSELDISERCVFFANGDDLLIAMRPDTAHL
FT                   LDNFSECFAELGLNYDFSSRTTKREELWFMSHCGIKRDGIYIPKLEPERIVSILEWDRS
FT                   HEPIHRLEAICAAMVEAWGYDELLHQIRKFYAWVLGQAPYSELARTGKAPYIAETALKS
FT                   LYTGVQPSAGDLSEYTRVLNEMYDDSLLQDNDLTVYHQSGNPSEFKDAGANPPAPKPKG
FT                   PYTAPEITEITEPEDPKQAALREARQKQPAVTPESYGRDTGEKPMRSVSPQRVKDKDVN
FT                   VGTTGTFLVPRVKLHTSKMRQPRVNGISVVNLQHLATYEPEQHNIGNTRSTQEQFQAWY
FT                   EGVKGDYGVDDAGMAILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAV
FT                   PTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPTR
FT                   AKEAHMQMKAAALKNAHNRLFGLDGNVSTQEEDTERHTATDVTRNIHNLLGMRGVH"
FT   mat_peptide     <1. .604
FT                   /product="nuclear inclusion protein b"
FT                   /note="NIb"
FT   mat_peptide     605. .1543
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1547. .1711
XX
SQ   Sequence 1711 BP; 520 A; 340 C; 402 G; 449 T; 0 other;

eu809485 Length: 1711  03-SEP-2012  Type: N  Check: 2608  ..

       1  actgatggtt gtgttggccg tctactacac tttgttgaaa ttgggtgttt
      51  cagagctcga tatcagtgaa cggtgtgttt tctttgcaaa tggggatgac
     101  ctactgatag ctatgagacc agatacagct catcttttgg ataacttcag
     151  tgagtgcttt gctgagctcg gactcaatta tgacttctca tcaaggacaa
     201  ctaagagaga ggaattgtgg ttcatgtctc actgtggaat caaacgggat
     251  ggaatataca ttcccaagct cgagcctgaa cgaatagtat ctattcttga
     301  atgggataga tcacatgagc ctatacacag acttgaagca atttgtgctg
     351  caatggtgga agcgtggggc tatgatgaac ttctccatca aattagaaaa
     401  ttttatgcat gggtcttagg acaagcacca tacagtgaac tagcacgaac
     451  tggaaaagcc ccatatattg ctgaaactgc acttaaatca ctgtatactg
     501  gagtacaacc tagcgctggc gatctcagcg agtacacacg tgtccttaac
     551  gagatgtatg atgatagcct ccttcaagac aatgatttaa cagtgtatca
     601  tcaatctggc aacccctctg aatttaaaga tgcaggtgcg aacccaccag
     651  caccaaagcc aaaagggccg tacacagcac cagaaatcac agaaattact
     701  gagcccgagg atcccaaaca agctgcgctt cgcgaagcta gacagaaaca
     751  acctgctgtc acacccgaat catacggtag agatacaggt gagaaaccta
     801  tgcgctctgt ttcaccacaa agggtaaaag acaaggatgt caatgttggt
     851  acgacaggta catttttagt accacgagtt aagcttcata ctagtaaaat
     901  gcgccaaccg agagtcaatg gaatctctgt agtaaactta caacaccttg
     951  caacctacga acctgagcaa cataacattg ggaatacacg ctcaacccag
    1001  gaacagtttc aagcatggta tgaaggtgtc aagggtgatt atggtgttga
    1051  tgacgctgga atggcaatct tgttgaatgg attgatggta tggtgcatag
    1101  agaatggaac atctccaaat ataaatggcg tttggacgat gatggatggg
    1151  gatgaacaag tgacgtatcc cataaagcca ttactggatc atgcagtgcc
    1201  tacttttagg caaatcatga cacacttcag tgacgttgct gaagcgtaca
    1251  tagaaatgag gaatcgcacc aaggcatata tgcctaggta tggattacaa
    1301  cgtaatttga ctgatatgag tcttgcgcga tatgcatttg atttctatga
    1351  gctgcactca acaacaccta cacgtgctaa agaagcacac atgcagatga
    1401  aagcagctgc acttaagaat gcgcataatc ggttgtttgg tttggatgga
    1451  aacgtctcca cgcaagaaga ggacacggag aggcacactg cgactgatgt
    1501  tactagaaat atacataacc tcttaggaat gaggggtgtg cactaggtga
    1551  aactttgcac tgtatttatt tacttatgtg gtttttagta tgcctttatt
    1601  taaattcgtg ttcttcagtc ccgacagaaa tggttgggtg tatcgacaga
    1651  gtgggctttt agcctggtca aaccacttga gaagtttttg gtttattagg
    1701  tatcttaagg g