Sequence of DPV Sweet potato virus C
Sweet potato feathery mottle virus isolate NZ1-2 polyprotein gene, partial cds.
ACC No: EU809493
Dated: 2012-09-03 | Length: 1261 | CRC: -1205398029
ID EU809493; SV 1; linear; genomic RNA; STD; VRL; 1261 BP.
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AC EU809493;
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DT 30-DEC-2009 (Rel. 103, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate NZ1-2 polyprotein gene, partial
DE cds.
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KW .
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OS Sweet potato virus C
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1261
RX DOI; 10.1094/PDIS-93-9-0933.
RX AGRICOLA; IND44294830.
RA Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA Valkonen J.P.T.;
RT "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT Africa";
RL Plant Dis. 93(9):933-939(2009).
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RN [2]
RP 1-1261
RA Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT ;
RL Submitted (09-JUN-2008) to the INSDC.
RL Department of Applied Biology, University of Helsinki, PL 27
RL Latokartanonkaari 7, Helsinki 00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1261
FT /organism="Sweet potato virus C"
FT /host="Ipomoea batatas (sweet potato)"
FT /strain="C"
FT /isolate="NZ1-2"
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /db_xref="taxon:930881"
FT CDS <1. .1096
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:D2CTK7"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:D2CTK7"
FT /protein_id="ACJ01837.1"
FT /translation="GKAPYIAETALRSLYTGVQPSADDLSEYTRVLNEMYDDSLLQDND
FT LTVYHQSGDPPEFKDAGANPPAPKPKGAFTSPEITEVTEPEDPRQAALREARQKQPAVT
FT PESYGRDTGEKPMRSISPQRLKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGISVVNL
FT QHLATYEPEQHNIGNTRSTQEQFQAWYEGVKGDYGVNDAGMSILLNGLMVWCIENGTSP
FT NINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYG
FT LQRNLTDMSLARYAFDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEE
FT DTERHTATDVTRNIHNLLGMRGVH"
FT mat_peptide <1. .154
FT /product="nuclear inclusion protein b"
FT /note="NIb"
FT mat_peptide 155. .1093
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 1097. .1261
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SQ Sequence 1261 BP; 387 A; 261 C; 296 G; 317 T; 0 other;
eu809493 Length: 1261 03-SEP-2012 Type: N Check: 6091 ..
1 tggaaaggcc ccatatattg ctgaaactgc acttagatca ctgtacactg
51 gagtgcaacc tagcgcggac gatctcagcg agtacacacg tgttcttaac
101 gagatgtatg atgatagcct ccttcaagac aatgatttaa cggtgtatca
151 tcaatctggt gacccccctg aatttaaaga tgcaggtgcg aacccaccag
201 caccaaagcc aaaaggggca tttacatcac cagaaatcac agaagttact
251 gagccggagg atcccagaca agctgcactt cgcgaagcta gacagaaaca
301 acctgctgtc acacccgaat catacggtag agacacaggt gagaaaccta
351 tgcgttctat ttcaccacaa aggttgaaag acaaagatgt caacgttggc
401 acgacaggca catttttggt gccacgagtt aagctccata ctagcaaaat
451 gcgccaacct agagtcaatg gaatctctgt agtaaactta caacacctcg
501 caacttatga acctgagcag cataacattg ggaatacacg ctcaactcag
551 gaacagtttc aagcatggta cgaaggtgtt aagggtgatt atggtgttaa
601 tgacgctgga atgtcaatct tgttgaatgg attgatggta tggtgcatag
651 agaatggaac atccccaaat ataaatggcg tttggacgat gatggatggg
701 gatgaacaag tgacgtaccc cataaagcca ttactggatc atgcagtgcc
751 tacttttagg caaatcatga cacacttcag tgacgttgct gaagcgtata
801 tagaaatgag gaatcgcacc aaggcatata tgcctaggta cggattacaa
851 cgtaacttga ctgatatgag tcttgcgcga tatgcatttg atttctatga
901 gctgcactca acaacaccta cacgtgctaa agaagcacac atgcagatga
951 aagcagctgc acttaagaat gcgcataatc ggttgtttgg tttagatgga
1001 aacgtctcaa cgcaagaaga ggatacggag aggcacactg cgactgatgt
1051 tactagaaat atacataacc tcttaggaat gaggggtgtg cactaggtgg
1101 aactttgcac tgtatttatt tacttatgtg gtttttagta tgcctttatt
1151 taaattcgtg tccttcagtc ccgacagaga tggttgggtg tattgacaga
1201 gtgggctttt agcctggtcc atacacttga gaaatttctg gtctattacg
1251 tatcataagg g