Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate PS1B-2 polyprotein gene, partial cds.
ACC No: EU809497
Dated: 2012-09-03 | Length: 1294 | CRC: -621860774
ID EU809497; SV 1; linear; genomic RNA; STD; VRL; 1294 BP.
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AC EU809497;
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DT 30-DEC-2009 (Rel. 103, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate PS1B-2 polyprotein gene, partial
DE cds.
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KW .
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OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1294
RX DOI; 10.1094/PDIS-93-9-0933.
RX AGRICOLA; IND44294830.
RA Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA Valkonen J.P.T.;
RT "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT Africa";
RL Plant Dis. 93(9):933-939(2009).
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RN [2]
RP 1-1294
RA Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT ;
RL Submitted (09-JUN-2008) to the INSDC.
RL Department of Applied Biology, University of Helsinki, PL 27
RL Latokartanonkaari 7, Helsinki 00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1294
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea batatas (sweet potato)"
FT /strain="EA"
FT /isolate="PS1B-2"
FT /mol_type="genomic RNA"
FT /country="Chile:Easter Island"
FT /db_xref="taxon:12844"
FT CDS <1. .1114
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:D2CTL1"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:D2CTL1"
FT /protein_id="ACJ01841.1"
FT /translation="LARSGKAPYIAETALKALYTGIQPSAFELSTYAKVLNEMYDDSVL
FT QENELEVYHQSNERTEFKDAGADPPAPKPKNIPPPPTITEITDPEDPKQAALKAARAKQ
FT PAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVNG
FT RTIINFQHLSTYEPEQYEVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCI
FT ENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKA
FT YMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQMKAAALKNAKNRLFGLDGN
FT VSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .166
FT /product="nuclear inclusion protein b"
FT /note="NIb"
FT mat_peptide 167. .1111
FT /product="coat protein"
FT /note="CP"
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SQ Sequence 1294 BP; 418 A; 246 C; 308 G; 322 T; 0 other;
eu809497 Length: 1294 03-SEP-2012 Type: N Check: 4970 ..
1 attagcacga agtgggaagg caccatacat agctgaaact gcacttaaag
51 cactctatac tggtatccaa cctagtgctt ttgaattgag tacgtatgca
101 aaagtgctta acgaaatgta tgatgatagt gtacttcagg agaatgagtt
151 agaagtatac catcaatcta atgaacgtac tgaattcaaa gatgcaggag
201 cggaccctcc agcccctaag cctaagaaca ttcctccacc acccacaata
251 actgaaatca ctgatccaga ggacccgaag caggcagctt tgaaagctgc
301 acgagcaaag caacccgcag tcattccaga atcatatgga cgagacacga
351 gcaaagaaag ggagtcaata gtagggacat catcaaaggg tgtgagggat
401 aaagatgtga atgttggcac tgtgggtaca tttgttgtgc cacgtgtcaa
451 gatgaatgca aataagaaga gacaaccaat ggtcaatgga aggaccatta
501 taaatttcca acacttgtca acgtatgaac cagagcagta tgaagtcgcg
551 aacacccgct cgactcaaga acagtttcaa gcatggtatg agggagtgaa
601 aggggactat ggtgttgacg atacaggaat ggggatctta ttaaatggac
651 taatggtttg gtgcattgaa aatggcacat ccccaaatat aaatggtgtg
701 tggacaatga tggatggtga tgagcaagtg acatatccaa ttaaaccatt
751 actggaccac gcagtgccta cttttaggca gattatgacg cacttcagtg
801 acgttgctga agcttatata gagatgcgaa accgtacaaa ggcatacatg
851 ccaaggtatg gtctacaacg taatttgact gatatgagtc ttgcgcgata
901 tgcatttgat ttctacgagc tgcattcaac cacccctgca cgtgctaaag
951 aagcacattt acagatgaag gcagccgcac ttaagaatgc gaagaatcgg
1001 ttgtttggtt tggatggaaa cgtctccacg caagaagaag atacggagag
1051 gcacacgaca actgacgtta ctagaaatat acataacctc ttaggaatga
1101 ggggtgtgca ataggacatc ctctgcactg tagcttatac ttatgttatc
1151 tttagtatgt ctttaattta aattcgtatc tttcagtcct gaaggagatg
1201 gttgaatgca taacatggtg ggattgtatc tcggttattg catttgagaa
1251 gtcacctttc tattacgtat cataagggac tcttaaaagt gagg