Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate PS1B-3 polyprotein gene, partial cds.
ACC No: EU809498
Dated: 2012-09-03 | Length: 1294 | CRC: -1705303970
ID EU809498; SV 1; linear; genomic RNA; STD; VRL; 1294 BP.
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AC EU809498;
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DT 30-DEC-2009 (Rel. 103, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate PS1B-3 polyprotein gene, partial
DE cds.
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KW .
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OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1294
RX DOI; 10.1094/PDIS-93-9-0933.
RX AGRICOLA; IND44294830.
RA Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA Valkonen J.P.T.;
RT "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT Africa";
RL Plant Dis. 93(9):933-939(2009).
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RN [2]
RP 1-1294
RA Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT ;
RL Submitted (09-JUN-2008) to the INSDC.
RL Department of Applied Biology, University of Helsinki, PL 27
RL Latokartanonkaari 7, Helsinki 00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1294
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea batatas (sweet potato)"
FT /strain="EA"
FT /isolate="PS1B-3"
FT /mol_type="genomic RNA"
FT /country="Chile:Easter Island"
FT /db_xref="taxon:12844"
FT CDS <1. .1114
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:D2CTL2"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:D2CTL2"
FT /protein_id="ACJ01842.1"
FT /translation="LARNGKAPYIAETALKALYTGVQPNASELSAYTRVLKEMYDDSML
FT QENDLEVYHQSNESAEFKDAGADPPAPKPKNIPPPPTITEITDPEDPKQAALKAARAKQ
FT PAVIPESYGRDTSKERESIVGTSSKGVRDKDVNVGTVGTFVVPRVKMNANKKRQPMVKG
FT RAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCI
FT ENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKA
FT YMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGN
FT VSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .166
FT /product="nuclear inclusion protein b"
FT /note="NIb"
FT mat_peptide 167. .1111
FT /product="coat protein"
FT /note="CP"
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SQ Sequence 1294 BP; 419 A; 244 C; 307 G; 324 T; 0 other;
eu809498 Length: 1294 03-SEP-2012 Type: N Check: 5408 ..
1 actagcacgg aatgggaaag caccatacat agctgaaact gcactcaaag
51 cactctatac tggtgttcaa cctaatgctt ctgaattgag tgcgtatacg
101 agagtgctca aagaaatgta tgatgacagt atgctccaag agaatgattt
151 ggaagtatat catcaatcta atgagagcgc tgaatttaaa gatgcaggag
201 cggaccctcc agcccctaag cctaagaaca ttcctccacc acccacaata
251 actgaaatca ctgatccaga ggacccgaag caggcagctt tgaaagctgc
301 acgagcaaag caacccgcag tcattccaga atcatatgga cgagacacga
351 gcaaagaaag ggagtcaata gtagggacat catcaaaggg tgtgagggat
401 aaagatgtga atgttggcac tgttggtaca tttgttgtgc cacgtgtcaa
451 gatgaatgca aacaagaaaa ggcaaccaat ggtcaaagga agggccatta
501 taaatttcca gcacttgtca acatatgaac cagagcagtt tgaagttgca
551 aacacccggt cgactcaaga acagttccaa gcgtggtatg aaggagtcaa
601 aggggattat ggtgttgacg acacaggaat ggggatctta ttaaatggac
651 taatggtttg gtgcattgaa aatggcacat ccccaaatat aaatggtgtg
701 tggacaatga tggatggtga tgagcaagtg acatatccaa ttaaaccatt
751 attggatcat gcagtgccta cttttaggca gattatgacg cacttcagtg
801 acgttgctga agcctatata gaaatgcgaa accgtacaaa ggcgtacatg
851 ccaagatatg gtttacaacg taatttgact gatatgagtc ttgcgcgata
901 tgcatttgat ttttacgagc tgcattcaac tacacctgca cgcgctaaag
951 aagcacattt acagatgaag gcagccgcac ttaagaatgc gcgaaatcgg
1001 ttgtttggtt tggacggaaa cgtctccacg caagaagaag atacggagag
1051 gcacacgaca actgatgtta ctagaaatat acataacctc ttaggaatga
1101 ggggtgtgca ataggacatc ctctgcactg tagcttatac ttatgttatc
1151 tttagtatgt ctttaattta aattcgtatc ttttagtccc gaaggagatg
1201 gttgaatgca taatatggtg ggattatatc tcgattattg catttgagaa
1251 gtcgcctttc tattacgtat cataagggac tcttaaaagt gagg