Sequence of DPV Sweet potato virus C
Sweet potato feathery mottle virus isolate PS1B-4 polyprotein gene, partial cds.
ACC No: EU809499
Dated: 2012-09-03 | Length: 1261 | CRC: 1021240753
ID EU809499; SV 1; linear; genomic RNA; STD; VRL; 1261 BP.
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AC EU809499;
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DT 30-DEC-2009 (Rel. 103, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate PS1B-4 polyprotein gene, partial
DE cds.
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KW .
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OS Sweet potato virus C
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1261
RX DOI; 10.1094/PDIS-93-9-0933.
RX AGRICOLA; IND44294830.
RA Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA Valkonen J.P.T.;
RT "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT Africa";
RL Plant Dis. 93(9):933-939(2009).
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RN [2]
RP 1-1261
RA Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT ;
RL Submitted (09-JUN-2008) to the INSDC.
RL Department of Applied Biology, University of Helsinki, PL 27
RL Latokartanonkaari 7, Helsinki 00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1261
FT /organism="Sweet potato virus C"
FT /host="Ipomoea batatas (sweet potato)"
FT /strain="C"
FT /isolate="PS1B-4"
FT /mol_type="genomic RNA"
FT /country="Chile:Easter Island"
FT /db_xref="taxon:930881"
FT CDS <1. .1096
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:D2CTL3"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:D2CTL3"
FT /protein_id="ACJ01843.1"
FT /translation="GKAPYIAETALKSLYTGVQPSAGDLSEYTRVLNEMYDDSLLQDND
FT LTVYHQSGNPSEFKDAGANPPAPKPKGPYTAPEITEITEPEDPKQAALREARQKQPAVT
FT PESYGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRVNGISVVNL
FT QHLATYEPEQHNIGNTRSTQEQFQAWYEGVKGDYGVDDAGMAILLNGLMVWCIENGTSP
FT NINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKAYMPRYG
FT LQRNLTDMSLARYAFDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLDGNVSTQEE
FT DTERHTATDVTRNIHNLLGMRGVH"
FT mat_peptide <1. .154
FT /product="nuclear inclusion protein b"
FT /note="NIb"
FT mat_peptide 155. .1093
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 1097. .1261
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SQ Sequence 1261 BP; 392 A; 259 C; 292 G; 318 T; 0 other;
eu809499 Length: 1261 03-SEP-2012 Type: N Check: 4634 ..
1 tggaaaagcc ccatatattg ctgaaactgc acttaaatca ctgtatactg
51 gagtacaacc tagcgctggc gatctcagcg agtacacacg tgtccttaac
101 gagatgtatg atgatagcct ccttcaagac aatgatttaa cagtgtatca
151 tcaatctggc aacccctctg aatttaaaga tgcaggtgcg aacccaccag
201 caccaaagcc aaaagggccg tacacagcac cagaaatcac agaaattact
251 gagcccgagg atcccaaaca agctgcgctt cgcgaagcta gacagaaaca
301 acctgctgtc acacccgaat catacggtag agatacaggt gagaaaccta
351 tgcgctctgt ttcaccacaa agggtaaaag acaaggatgt caatgttggt
401 acgacaggta catttttagt accacgagtt aagcttcata ctagtaaaat
451 gcgccaaccg agagtcaatg gaatctctgt agtaaactta caacaccttg
501 caacctacga acctgagcaa cataacattg ggaatacacg ctcaacccag
551 gaacagtttc aagcatggta tgaaggtgtc aagggtgatt atggtgttga
601 tgacgctgga atggcaatct tgttgaatgg attgatggta tggtgcatag
651 agaatggaac atctccaaat ataaatggcg tttggacgat gatggatggg
701 gatgaacaag tgacgtatcc cataaagcca ttactggatc atgcagtgcc
751 tacttttagg caaatcatga cacacttcag tgacgttgct gaagcgtaca
801 tagaaatgag gaatcgcacc aaggcatata tgcctaggta tggattacaa
851 cgtaatttga ctgatatgag tcttgcgcga tatgcatttg atttctatga
901 gctgcactca acaacaccta cacgtgctaa agaagcacac atgcagatga
951 aagcagctgc acttaagaat gcgcataatc ggttgtttgg tttggatgga
1001 aacgtctcca cgcaagaaga ggacacggag aggcacactg cgactgatgt
1051 tactagaaat atacataacc ttttaggaat gaggggtgtg cactaggtga
1101 aactttgcac tgtatttatt tacttatgtg gtttttagta tgcctttatt
1151 taaattcgtg ttcttcagtc ccgacagaaa tggttgggtg tatcgacaga
1201 gtgggctttt agcctggtcc atacacttga gaagtttctg gtctattacg
1251 tatcataagg g