Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate NZ4-3 polyprotein gene, partial cds.
ACC No: EU809507
Dated: 2012-09-03 | Length: 1294 | CRC: 1649581134
ID EU809507; SV 1; linear; genomic RNA; STD; VRL; 1294 BP.
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AC EU809507;
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DT 30-DEC-2009 (Rel. 103, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate NZ4-3 polyprotein gene, partial
DE cds.
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KW .
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OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1294
RX DOI; 10.1094/PDIS-93-9-0933.
RX AGRICOLA; IND44294830.
RA Rannali M., Czekaj V., Jones R.A.C., Fletcher J.D., Davis R.I., Mu L.,
RA Valkonen J.P.T.;
RT "Molecular Characterization of Sweet potato feathery mottle virus (SPFMV)
RT Isolates from Easter Island, French Polynesia, New Zealand, and Southern
RT Africa";
RL Plant Dis. 93(9):933-939(2009).
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RN [2]
RP 1-1294
RA Rannali M., Czekaj V., Jones R., Fletcher J., Davis R., Mu L., Valkonen J.;
RT ;
RL Submitted (09-JUN-2008) to the INSDC.
RL Department of Applied Biology, University of Helsinki, PL 27
RL Latokartanonkaari 7, Helsinki 00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1294
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea batatas (sweet potato)"
FT /strain="RC"
FT /isolate="NZ4-3"
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /db_xref="taxon:12844"
FT CDS <1. .1114
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:D2CTM1"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:D2CTM1"
FT /protein_id="ACJ01851.1"
FT /translation="LARSGKAPYIAETALKALYTGVQPSASELSAYAKVLNEMYDDSVL
FT QENELEVYHQSGERTEFKDAGANPPAPKSKINPPPPTITEIVDPEDPKQAALKAARAKQ
FT PATIPESYGRDTSKEKESIVGASSKGVKDKDVNVGTVGTFVVPRVKMNANKKRQPMVNG
FT RAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLMVWCI
FT ENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRTKA
FT YMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFGLDGN
FT VSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .166
FT /product="nuclear inclusion protein b"
FT /note="NIb"
FT mat_peptide 167. .1111
FT /product="coat protein"
FT /note="CP"
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SQ Sequence 1294 BP; 412 A; 241 C; 312 G; 329 T; 0 other;
eu809507 Length: 1294 03-SEP-2012 Type: N Check: 9511 ..
1 attagcacga agtgggaagg caccatacat agctgaaact gcacttaaag
51 cactctatac tggtgtccaa cctagtgctt ctgaattgag tgcgtatgca
101 aaagtgctta acgaaatgta tgatgatagt gtacttcagg agaatgagtt
151 agaagtatac catcaatctg gtgaacgtac tgaatttaaa gatgctggag
201 cgaaccctcc agcccctaag tccaagatca atcctccacc acctacaata
251 actgagatcg ttgatccgga ggacccgaag caagcagctt taaaagctgc
301 acgagcaaag caacccgcaa ccattccaga atcatatgga cgagacacta
351 gcaaggagaa ggaatcaata gtgggggcat catcaaaggg tgtgaaggat
401 aaagatgtaa acgttggtac agttggtacg tttgtcgtgc cacgtgttaa
451 gatgaatgca aacaagaaaa ggcaaccaat ggtaaatgga agggccatta
501 taaatttcca acacttgtca acatatgagc cagaacagtt tgaggttgca
551 aacacccggt cgactcaaga gcagtttcaa gcatggtatg aaggagtgaa
601 aggggactat ggtgttgacg atacaggaat ggggatctta ttaaatggat
651 taatggtttg gtgcattgaa aatggcacat ccccaaatat aaatggtgtg
701 tggacaatga tggatggtga tgagcaagtg acatatccaa ttaaaccatt
751 gttggaccat gcagtgccta cttttaggca gattatgacg cacttcagtg
801 acgttgctga agcttacata gagatgcgaa accgtacaaa ggcgtacatg
851 ccaaggtatg gtctacaacg taatttgact gatatgagtc ttgcgcgata
901 tgcatttgat ttttacgagc tgcattcaac tacacctgca cgtgctaaag
951 aagctcattt acagatgaag gcagccgcac ttaagaatgc gcgaaatcgg
1001 ttgtttggtt tggacggaaa cgtctccacg caagaagaag atacggagag
1051 gcacacgaca actgatgtta ctagaaatat acataacctc ttaggaatga
1101 ggggtgtgca ataggacatc ctctgcactg tagcttatac ttatgttatc
1151 tttagtatgc ctttaattta aattcgtgtc tttcagtccc gaaggagatg
1201 gttgaatgca taacatgatg ggattatatc tcggttattg catttgagaa
1251 gtcacctttc tattacgtat cataagggac tcttaaaagt gagg