Sequence of DPV Cycad leaf necrosis virus
Cycad leaf necrosis virus, complete genome.
ACC No: EU853709
Dated: 2008-07-29 | Length: 9205 | CRC: 1705318482
ID EU853709; SV 1; circular; genomic DNA; STD; VRL; 9205 BP.
XX
AC EU853709;
XX
DT 29-JUL-2008 (Rel. 96, Created)
DT 29-JUL-2008 (Rel. 96, Last updated, Version 1)
XX
DE Cycad leaf necrosis virus, complete genome.
XX
KW .
XX
OS Cycad leaf necrosis virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-9205
RA Lockhart B.E., Olszewski N.E., Swenson A.S.;
RT "Characterization of Cycad leaf necrosis virus, the first badnavirus
RT detected in a gymnosperm";
RL Unpublished.
XX
RN [2]
RP 1-9205
RA Lockhart B.E., Olszewski N.E., Swenson A.S.;
RT ;
RL Submitted (26-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Pathology, University of Minnesota, 1991 Upper Burford Circle, St.
RL Paul, MN 55108, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .9205
FT /organism="Cycad leaf necrosis virus"
FT /mol_type="genomic DNA"
FT /country="USA"
FT /isolation_source="cycad"
FT /virion
FT /db_xref="taxon:549205"
FT CDS 722. .1249
FT /codon_start=1
FT /product="ORF1"
FT /protein_id="ACF60611.1"
FT /translation="MSKSFWEAKFDEYKNSHSLRISDLTYLDLASLEKVLVRDLGHNLQ
FT ILCHRSDLGNKVCLAATHVSCEKVINTLVDHNQKLQKDLKSLRSVVSQQQSSLESVQKS
FT QVELGSELKGLRAVVLQNRPLTSGDIEELVLKISQQPKAIEQQTENLTVELTQKVQQIE
FT HLIHRLEKTILG"
FT CDS 1246. .1632
FT /codon_start=1
FT /product="ORF2"
FT /protein_id="ACF60612.1"
FT /translation="MSLANSKSSQAYQDALAATATAWEGTSSGFSDKAETPSIASLSRQ
FT LNTILFLTLRIDSNLSDLQNRVQVLDDRVRLVQNAREVYGTRAQIDSLAEQLAGLQINP
FT TTVIKTTGTLKVHRNPFELLRRIR"
FT CDS 1629. .7379
FT /codon_start=1
FT /product="ORF3"
FT /protein_id="ACF60613.1"
FT /translation="MSRSVGGASTSAQASGEPLVEDQVRDYRRGQRRRYEAQRVARNLQ
FT NIGRTIVGARPREHTLALLMDPEAELTRSMQERARTVPAEVLYMTRRDDIHHRVYYHRS
FT EERLLIIGNTQVDRTFIPQQSYEALSKEHMEYIHLGVIQVRLQILHRKFAGTLALISFR
FT DTRWAGDDDRQLISVMEVDLSEGCQLIYVIPDMMLTLKDFYRHIQVSIQTKGYDTWTNG
FT EANLLVTRSCTARLSNTPNVGFNYKTERVAEYLHSRGVQAINATQHNALKLRNTEWHLQ
FT PSQATAPMQPQTVQTVGRYDGSLSLQFGNYTHAESSRPPVYTAHDEERDIDEESIAYLY
FT SSDGEADDTDLEFLTQLDQVIPPVENVEGEEVSLFSLLDELDAEAAAAAAAAAVTEEPA
FT VADPIIEEFLQALDSAEQELQVLIEDDRQRQAPARRAAHAEKRRRVEAAEQNRQNIEDF
FT PDEEALMDLLRQPCTETLEHPRENDDVSLNLAVLEEDNKDELYDYPTAIRNLENLFSSE
FT VTGSYSPPDTDMVGQTGYAPATSTQGWVGSHKFEGSTSKARFKWKDPSEMFTLPSAYQV
FT EGAIFVMPPDYDPKVFSRWESITLNHMAPKAFANATDKITYIENLLGENEKITFQTWRM
FT SYEQEYEALKTQAVGENGTQNVLSHIRKIFFLEDPKQGTTSSQDAAYRSLKSLTCMEMT
FT GTAIRRYMASYFDLAAKSGRMWSSEELSKEFFQKLPGRLGERVEQAFNAKFQGNTIGVV
FT PRITFTQRYLTEICEEASYQRSLKNLNFCSSFPIPNYQKGAGRKFGLRKSKSYKGKPHK
FT THVRIEKSKYLRSKKCKCYACGEEGHFAKDCKNPRKLTERVAILEDLDLGDDYDVVSVG
FT LDEGDQSDIYSVSEGEEGHSDLHDETIFSLTEEDDEAALLVGKAGTWRPQMKVSKKEFS
FT CEHEWDYEVSGELKCRCCFLPTRSKDRIHCKKCKITVCNMCSEFCYNIKIVRELPSSSL
FT LKDRKKVDYIGVCIEVLEENKKLRTEKEVLIQDLNSALEQLKNTKGKEIIVEEESPELL
FT ARISYLEQRELFMQELYEKEKFEKDLLQAQMRSMAAEMERLQQQVSQLEEQIAQKAESV
FT GMLMEENEQVFSASQALQPKGQYNGLYNLQIEICCDSWTAFLVNAILDTGATTSCIRTG
FT KAPRETVEDSKTQAVLKGVNSVSIGTKSLRPGLMKIQGGTYRIPKTYVIDIQLSEGIDM
FT ILGCNFIRAMEGGLRIEGDTLSFYKLLTTVQTSRHAQQIAAIQELELDEIEYQNLGALD
FT DQAFFNKKFMEQNRALMERLKKIGIIGEDPLKFWERNKVKCKLDIINPNLTIEDKPLKH
FT VTPAMKEQMRKHIDKLLELKVIRPSKSRHRTTAMIVQSGTEMVLQKDKNGKEKMVEKRG
FT KERLVFNYKRLNDNTEKDQYSLPGINTIIQRIGRSKIYSKFDLKSGFHQVAMDPASIEW
FT TAFWAIDGLYEWLVMPFGLKNAPATFQRKMDMCFAGTEHFIAVYIDDILVFSETEEDHV
FT KHLHQMLHICEKEGLVLSPTKMKIGATSIDFLGATIGRSKIRLQPHIIKKITEAKEEEL
FT QTTKGLRAWLGILNYARSYIPNLGKTLGPLYSKVSPTGEKRMNHQDWALVKKVKDSVQN
FT LPDMELPPKQCCIVIETDGCMDGWGGVCKWKLTRHDSKTTEKTCAYASGKFSPVKSTID
FT AEIQAVICSLDKFKIFYLDKQEVVIRTDCQAIISFFDKTSQNKPSRVRWLTFTDFITGI
FT GIPVRFEHISGKDNLLADTLSRLVLCMVQGWTHDGIKAITPAITAIKDDSDSARVAAII
FT MKVLPQERIFHLTEVEGPALKCACNKEVLIKTSHTWRNPDRKFCVCPDGRCHIWYWWDL
FT LEDYVQQRVTAAQLAECKNFRQQLDNIKRQLDSDKRNRAHSI"
XX
SQ Sequence 9205 BP; 2779 A; 2036 C; 2120 G; 2270 T; 0 other;
eu853709 Length: 9205 29-JUL-2008 Type: N Check: 6740 ..
1 tggtatcaga gcttggtttg tgtaatattt ttcatgttgt aaattcatgt
51 tttgtttatc ttatatcatg agtttctaag tttttaatag gggccaaagg
101 gctctgcctt aacttcaact tgaaatgatc ttattgttat atttttgata
151 attctgttct gatgtttctt ggaagaacta acgattaaag aactgtttaa
201 gtctaaaacg aaccctggac agatgtatag tgtttaggac ttaggacaaa
251 gcctgaagac ccgaatgaag cttgtaacca acgggagcct gaagttatct
301 gtaggattct gagagaaaaa gctttccgaa gctttcctga agctctcagg
351 caaaaggccg aagagcccgt taggcgagga ggccgtgaag ggcgttaagt
401 aggctgagcc agaggagtgc ctaaggaaga ctgcctagga agattgccgc
451 tcaaagagtt tgaaagataa tcaaggcaaa cagaggtgaa aagctgagta
501 aggatcgaca gaaggagttt taagttcaac tcactatata aacgaaaagg
551 gtctgtagaa gatgaaaatg gaactaagat tgtaagttct gctaataaac
601 attgtaactt cattatccat gatctaacag tcaagattaa ggtagagaag
651 aagttttggt atccctgcgg atcccctatt ttgtctaaaa tcgtttcttc
701 acatttcata ttttgttgtt tatgtcaaaa tctttctggg aagctaagtt
751 tgacgaatat aaaaattctc atagtcttcg tatttctgat ttaacttatc
801 ttgatcttgc atctttagaa aaggttttag tccgagacct tggtcacaat
851 ttacaaattt tgtgtcatag aagtgattta ggaaacaagg tttgtttagc
901 tgccacccac gtgtcgtgtg aaaaggtcat aaatactctt gtagatcata
951 atcaaaaact ccaaaaagat ttgaagtctt taaggtctgt tgtgtcccaa
1001 cagcaatcta gtttagagtc tgtacaaaag tctcaggtag aattaggttc
1051 agaattgaaa ggtttgagag cagtggttct gcaaaacaga ccactcacat
1101 ctggtgatat agaggagttg gtcctaaaaa ttagccaaca gcctaaagca
1151 attgaacagc agactgagaa tctaacggtt gaactcactc agaaggtgca
1201 acagatcgag cacctaatac atcgtctgga aaagacgata ctgggatgag
1251 cttggctaac agtaaaagca gtcaagcata tcaagacgct ttagcagcaa
1301 cagcaacagc ttgggaaggg acttcatcag gtttctcaga taaagcagag
1351 accccaagca tcgcttctct atccagacaa ctcaatacca ttctcttcct
1401 aactcttagg attgacagta atcttagcga tctgcagaat agagttcaag
1451 ttttggacga cagggttaga cttgtccaga acgcccgtga agtatacggg
1501 actagagcac agatagactc attagcagag cagttagcag gtttgcagat
1551 taaccccacc actgtaatta aaaccacagg tacgttgaaa gttcatagga
1601 atccttttga attactccga aggataagat gagtcgatca gttggaggag
1651 catcgacttc agcacaggct tcaggtgaac ccctggtaga ggatcaagtt
1701 cgagattaca gaaggggaca gcgcagaagg tacgaagcac agcgagtggc
1751 cagaaacttg caaaacattg gccgcacaat tgttggagca agacctaggg
1801 aacataccct agccctgttg atggacccag aagcagaact cacccggtcc
1851 atgcaagaac gtgccagaac agtacctgca gaggtacttt acatgaccag
1901 gagggatgat atacaccaca gagtgtacta tcacagatcg gaagaacgat
1951 tgcttatcat tggcaatact caggtcgaca ggaccttcat ccctcagcaa
2001 tcttacgaag ccttaagtaa agaacatatg gagtatattc atttaggtgt
2051 catacaagtt agattacaga ttttacatag aaagtttgca ggcactttag
2101 ccctaattag ttttagagat acaagatggg ctggagatga tgatagacag
2151 ctcatttctg ttatggaagt ggatctctct gaaggatgcc aattaattta
2201 tgtaattcct gatatgatgt tgactttaaa agatttctac agacacatcc
2251 aggtcagcat acagactaag ggctatgaca cttggacgaa tggagaagca
2301 aatctcctag ttacaaggag ttgtactgca cgactatcca acactccaaa
2351 tgttggattc aattataaaa ctgagagagt agctgagtat ctgcattcta
2401 gaggcgtcca ggccatcaac gccactcagc ataatgccct taagctcagg
2451 aatactgaat ggcacttgca gccatcacag gcaactgccc cgatgcagcc
2501 ccagaccgtc caaacagttg gacgctacga tggttccctt agtttacaat
2551 ttgggaacta tacacatgct gaatctagta ggcccccggt ctacactgct
2601 catgatgagg agcgcgatat tgacgaggaa tccatcgcat atttgtattc
2651 cagcgatggc gaagctgatg atactgacct tgagttttta acgcagcttg
2701 atcaggtgat tccacctgtt gaaaacgtgg agggagaaga ggtcagtctt
2751 ttctcgcttt tagatgaact ggatgccgaa gcagcagctg cagccgcagc
2801 cgccgcagtc accgaagaac ctgctgtagc agacccaata attgaagagt
2851 tcttgcaggc acttgactct gcagaacaag aattgcaggt tttgatcgaa
2901 gacgacagac aaagacaggc accagcaaga agagcagccc atgctgagaa
2951 aagaagaaga gtagaagcag ccgagcaaaa tcggcaaaac attgaagact
3001 tccctgatga ggaagcattg atggatcttc ttaggcagcc ctgtactgaa
3051 actttggaac atcctagaga gaatgatgat gtaagtttga atttggctgt
3101 ccttgaagag gataataaag atgaacttta tgactacccc actgcaatta
3151 ggaacttgga gaatttgttc agcagtgaag taacaggaag ctatagccct
3201 ccagacacag atatggttgg tcagacagga tatgctcctg cgaccagcac
3251 acagggatgg gttggctcac ataaatttga aggttccacc tccaaggctc
3301 gattcaaatg gaaggatcca agtgaaatgt tcacccttcc ctcagcctac
3351 caagttgaag gggcaatttt tgttatgccc ccagactatg atcctaaggt
3401 gttctcaagg tgggagagca tcactctcaa ccatatggcg ccgaaggcat
3451 ttgccaatgc cactgataaa atcacttaca tagaaaatct tcttggtgaa
3501 aacgagaaga ttacatttca aacttggcgc atgagctacg agcaagagta
3551 tgaagcgctg aagacgcaag ccgtgggaga aaacgggaca cagaacgtcc
3601 tgtcacatat tcggaagatc ttctttctgg aagatccaaa gcaggggacg
3651 acatcaagtc aagacgcagc ctaccgcagc ctcaaaagcc tcacttgcat
3701 ggaaatgact ggcactgcta ttcgcagata tatggctagt tatttcgact
3751 tggccgcaaa atcaggaaga atgtggtcat cagaggaatt gtcaaaggaa
3801 ttcttccaaa agttgcctgg cagattaggc gagcgagtgg agcaggcctt
3851 taatgcaaaa ttccagggta acaccattgg tgttgttcct cggattactt
3901 ttacccagcg gtatctaaca gaaatatgtg aggaagcctc ctaccagagg
3951 tccctcaaaa atttgaattt ttgcagcagt ttccccattc cgaattatca
4001 gaagggcgct ggaagaaaat ttggtctccg caaaagcaaa agctacaaag
4051 gtaagccgca caaaactcat gtgcgcattg aaaagagtaa atacttaaga
4101 tccaagaagt gtaaatgcta tgcgtgtggc gaggaaggcc atttcgcgaa
4151 agattgtaaa aatcctcgaa agctgaccga acgagttgcc attctggagg
4201 atctggatct tggagacgac tatgatgtgg tgtcagtagg acttgatgaa
4251 ggtgatcaat ctgacatcta cagcgtttca gaaggtgagg aaggtcattc
4301 agaccttcat gatgaaacta ttttttcact aacagaggaa gatgatgaag
4351 cagccttact tgttggaaag gcaggaacct ggaggcctca aatgaaggta
4401 tccaagaaag agttttcctg tgaacatgag tgggactatg aagtctcagg
4451 agaattaaaa tgcaggtgtt gtttcctccc gaccagaagc aaagatagga
4501 ttcactgtaa aaagtgtaag ataactgtat gtaacatgtg ctctgaattt
4551 tgttacaaca ttaaaatagt tagagagttg cctagttcta gcctgttaaa
4601 agataggaag aaagtagatt atataggtgt ttgcatagaa gttctggaag
4651 agaacaaaaa gttgcgaact gaaaaagaag tgctgattca agatttaaat
4701 tcagccctag aacagttgaa aaatacaaag ggcaaagaaa tcattgttga
4751 agaggagtcg cctgagctct tagctaggat cagttacctt gaacaaaggg
4801 aactgttcat gcaggagctg tacgaaaagg aaaaatttga gaaagacttg
4851 ctgcaagcac aaatgcgcag catggcagca gagatggagc ggctacagca
4901 acaggtttca cagcttgagg agcagatcgc acaaaaggca gaaagcgtcg
4951 gcatgctgat ggaagaaaat gaacaagtat tctcagcatc acaggcattg
5001 caaccaaaag gccaatataa tggcctgtac aatttacaga tagaaatttg
5051 ttgtgattca tggacagcat ttcttgtaaa tgccattctt gatacaggtg
5101 ctacaacttc ctgcattcga acaggaaagg cacccagaga aacagtagaa
5151 gactccaaaa cgcaggcagt acttaaggga gtaaattctg tctccattgg
5201 gaccaaatcc ctcagacctg gtctcatgaa gatacaagga ggtacctata
5251 gaatcccaaa aacatatgtc atcgacatac agctgagcga gggtattgat
5301 atgatccttg gctgcaattt tatccgcgcc atggaaggag gattacgcat
5351 agaaggtgat accctgagtt tttacaaact cctcaccact gtgcagacca
5401 gcaggcacgc ccagcagata gcagcgatcc aagaattgga gctcgatgaa
5451 attgaatatc aaaatctggg agccctcgat gatcaggcct ttttcaacaa
5501 aaaattcatg gagcagaacc gcgcgttaat ggagcgactg aagaaaatag
5551 ggattatcgg cgaagatccc ttaaagtttt gggaacgcaa caaggtaaaa
5601 tgcaagttgg acatcataaa tcccaacttg acaatagagg acaagcctct
5651 gaagcatgtc actccagcaa tgaaggaaca gatgcgtaag catattgata
5701 agttactgga gttgaaggtc attcggcctt ccaagagccg gcaccgaacg
5751 actgcaatga ttgtgcagtc cggtacggaa atggtccttc agaaggacaa
5801 aaatggtaag gaaaaaatgg tagaaaagag ggggaaagaa cggttagtct
5851 tcaactataa acggttgaat gacaacacag agaaagatca gtattctctc
5901 ccaggcataa ataccattat acagaggata ggtagatcca aaatatactc
5951 aaagtttgat ttgaaaagtg ggttccatca agtcgcaatg gacccagcct
6001 ctatcgagtg gactgccttt tgggccattg acggcctata cgaatggttg
6051 gtgatgcctt tcggcctcaa aaacgcacca gccacgtttc aaagaaagat
6101 ggacatgtgt tttgcaggaa ctgagcactt tatcgccgtg tacatcgacg
6151 atatcctcgt cttctcagag acagaagagg atcatgtgaa gcatctccat
6201 cagatgctcc acatttgtga aaaggaaggg cttgtcctaa gcccaacaaa
6251 gatgaaaata ggggctacct ctattgattt ccttggagcc acgattggca
6301 ggtcaaagat aaggctccag ccccatatta taaagaaaat cacagaagca
6351 aaagaggagg agctccagac aacgaaagga ttgagagctt ggctaggaat
6401 tctcaattat gcaaggagct atatccctaa tttaggtaag acacttgggc
6451 cattgtactc aaaggtttct ccaactggag aaaaacggat gaatcaccaa
6501 gactgggccc tcgtgaagaa ggtaaaagat tccgtgcaga acctccctga
6551 catggaatta cctcccaagc aatgctgcat cgtcattgag actgacggtt
6601 gcatggacgg atggggaggc gtttgtaaat ggaagctgac aaggcacgac
6651 agcaaaacca cagaaaagac atgtgcttac gccagcggca agttctcacc
6701 ggtcaaatcg accattgatg ccgaaatcca ggctgtcatc tgcagccttg
6751 ataaattcaa gatattttat cttgataagc aggaggtcgt catcagaacc
6801 gactgtcaag ccataatctc gttctttgac aagacatctc agaacaagcc
6851 atcccgagta cgttggttga ccttcacgga tttcattacc ggcatcggca
6901 ttccagtaag attcgagcat atcagtggga aggataatct gctagctgac
6951 acactctccc gactggtgct ctgcatggtc caaggatgga cccacgatgg
7001 catcaaagcc atcaccccag caatcacagc aataaaagac gacagcgaca
7051 gcgcacgcgt tgccgccata ataatgaagg tgctcccaca agaacgcatc
7101 ttccatttga cggaagttga ggggccagcc ctcaagtgcg catgcaataa
7151 agaggtcttg attaagacct cccacacttg gagaaatccc gaccgaaaat
7201 tctgtgtctg cccagatggc agatgccaca tctggtattg gtgggatctc
7251 ctcgaagatt acgtccaaca gcgagtcacc gcagcccagc tcgcagagtg
7301 caagaatttc cgacagcaac tggacaacat caaaaggcag ttggacagtg
7351 acaaaagaaa ccgggcccac agcatatgaa ggaagcgtgc tgagcccata
7401 aataaaggcc ccttggccac ttgtaaaaat tgtaaaaaga tgtaaatact
7451 caggcatgac gtcacccctg acgtcaccat gacatcaccc gcataaagaa
7501 gggaaatctg tccctctcag gcatgacgtc accatgacgt cacccctgac
7551 gtcaccatga catcacccgc ataaagaagg gaaatctgtc cctctcaggc
7601 atgacgtcac ccctgacgtc accatgacat caccccgcat aaagaaggga
7651 aatctgtccc tctcaggcat gacgtcaccc ctgacgtcac catgacatca
7701 tcaccccgcg tgaagaaggg aatctatccc tctcaggcat gacgtcaccc
7751 ctgacgtcac tccacactcg caataaggca aaggaatctg tcaccatcga
7801 cagcgacagc ctcaataacg acagggaatc gcatccacgt atgtgtcagt
7851 gggcgtccct ctcagtcaca tcccgtagta ggcatagaat ctgtcatagt
7901 caggtcccac tagtcgagtc gtgaaagtca cgatcaaaga gaatctccgg
7951 atgacaggtc ggtgtgactt acaccgcgaa aggagtggtt tgaccctcta
8001 cctggcatgt ggacccttct cggcgattat gaccgccact ttaggtcaca
8051 tccgcccgta ggtcccccaa ggtcggtggg aatctgtccc cacctatcca
8101 tgtcgaacgg aaccctgcgt ggtacccgtg cgtcagtcac atcagtcaca
8151 tcgcactaag tcccagtgcg tgtccccatc aggcatcccg cgtcttccaa
8201 gatgccttcc agtcgtaatc ccgcgtgcac cgcccacggg attccctttc
8251 cgtcacgtcg atagcgacga gatgctcttc ccgtctcgat cagagcatct
8301 tcgcccgtcg agacccttcc aacgtctcga tcgtgcgtta gtggggaatc
8351 caccgcccca cgacggaact ttatgtccca tccgggtcag catccaccgc
8401 ctcacggaga tgccctcggg agccctcgag ctcattattg agcatcgagt
8451 ccagagtgga gtagtccgcc cacgccgagt ccgacgccga gtccgccgcc
8501 gagtccgcca gttagtccgc cagtccggtc cgccagtccg gtccgccagt
8551 ccgcccgtgc cagtccggca cctgttatgc ccagtccggc atatgtaaga
8601 ctctcattct tattctaatt ctaattccac gtatttcttt tgtgagtcga
8651 ttctaatgat ctatttttat aagtgccgtt tcttaatcag tttcatacta
8701 tgtatctatt tcgttctgtc atgtgtatct gttatttcct ttaatcttta
8751 atttgttatg tttttcttat tgcccctttt caccccgtga ataaaatacg
8801 ggtttttcat ttcagttatt tttcatttta gttatctgca tttcatacag
8851 aaggtgtgct aaggaacccc aaggtataca gtctcccata aagagctgaa
8901 tatacccgtg ggcaccagcc ttcttgcatt tgcatatagt atctagtcat
8951 tcaaggtcgt agccttcgag gcttgataaa ctgagcaatt gcgctcaacc
9001 ttgaacgatt atagtaagcg tgtatgaatt tgtatatcat cagttatggt
9051 ttgttcactc ttctcagttt tcttatgttc tgttttatcg taattactct
9101 gattcgtata atgtttcaat cttatgtttt aaattaatat tacaccgtgt
9151 acctttcact actttgtgtt tttgattgag tacaagatcc gttttaattt
9201 ctctc