Sequence of DPV Ageratum enation virus
Ageratum enation virus - Lucknow segment A, complete sequence.
ACC No: EU867513
Dated: 2013-06-13 | Length: 2746 | CRC: -1424074006
ID EU867513; SV 1; circular; genomic DNA; STD; VRL; 2746 BP.
XX
AC EU867513;
XX
DT 13-AUG-2008 (Rel. 96, Created)
DT 13-JUN-2013 (Rel. 117, Last updated, Version 2)
XX
DE Ageratum enation virus - Lucknow segment A, complete sequence.
XX
KW .
XX
OS Ageratum enation virus - Lucknow
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2746
RA Srivastava A., Raj S.K., Snehi S.K., Khan M.S., Chandra P., Pandey R.M.;
RT "First molecular identification of Ageratum enation virus associated with
RT yellow vein net disease in grain amaranth (Amaranthus cruentus L.) in
RT India";
RL Unpublished.
XX
RN [2]
RP 1-2746
RA Raj S.K., Snehi S.K., Khan M.S.;
RT ;
RL Submitted (02-JUL-2008) to the INSDC.
RL Plant Molecular Virology, National Botanical Research Institute, Lucknow,
RL U. P. 226 001, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .2746
FT /organism="Ageratum enation virus - Lucknow"
FT /segment="A"
FT /host="Amaranthus cruentus L. (Grain Amaranth)"
FT /strain="Lucknow"
FT /isolate="Amaranths"
FT /mol_type="genomic DNA"
FT /country="India"
FT /db_xref="taxon:500471"
FT CDS 133. .480
FT /codon_start=1
FT /product="AV2"
FT /note="precoat protein"
FT /db_xref="GOA:B5APR0"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:B5APR0"
FT /protein_id="ACG60165.1"
FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDL
FT ISVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ
FT KTQDVQDVQKS"
FT CDS 293. .1063
FT /codon_start=1
FT /product="AV1"
FT /note="coat protein; involved in encapsidation and virus
FT transmission by insect"
FT /db_xref="GOA:B5APR1"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:B5APR1"
FT /protein_id="ACG60166.1"
FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWA
FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKGQSFESRHDIQHIGKVMCVSDVTRGTGLTHR
FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP
FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH
FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN"
FT CDS complement(1060. .1464)
FT /codon_start=1
FT /product="AC3"
FT /note="REn protein; increases viral replication"
FT /db_xref="GOA:B5APR2"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:B5APR2"
FT /protein_id="ACG60167.1"
FT /translation="MDSRTGELITAAQAENGVYTWENQNPLYFKITEHQNRPFLMKEDS
FT ITVQIQFNYNLRKALEIHKCFLAYRIWMTSQPPTGQFLRVFKTQVLKYLNNLGIISINN
FT VIRAVDHVLWDVLEHIVYVDQSYSIKFNIY"
FT CDS complement(1205. .1609)
FT /codon_start=1
FT /product="AC2"
FT /note="TrAP; transcriptional activator for virus sense
FT genes"
FT /db_xref="GOA:B5APR3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:B5APR3"
FT /protein_id="ACG60168.1"
FT /translation="MRSSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA
FT CHNHGFTHRGTHHCSSSREWRVYLGESKSPVFQDNRTPEPAISHERGQHHRPNTVQLQP
FT EESVGDTQVFSSLPNLDDFTASDWAILKGL"
FT CDS complement(1512. .2597)
FT /codon_start=1
FT /product="AC1"
FT /note="replication associated protein; Rep; viral DNA
FT replication"
FT /db_xref="GOA:B5APR4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:B5APR4"
FT /protein_id="ACG60169.1"
FT /translation="MAAPNRLKINAKNYFLTYPKCSLTKEEALFLLLNLQPPTNKKYIK
FT IFRELHKDGSPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQRAKSSTDVKSYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYH
FT NLNSNLDRIFSPPLEVYISPFLSSSFDQVPEELEEWVSENVMVAAARPLRPQSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNNALRNWALKNAIFVTLEGPL
FT YSGSNQSAAQASQEGDEASTC"
FT CDS complement(2183. .2440)
FT /codon_start=1
FT /product="AC4"
FT /note="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:B5APR5"
FT /protein_id="ACG60170.1"
FT /translation="MGALISMCSSSSKGNISARINDSSTWYPQTGQHISIRTFRELNPA
FT PTSSPTSTRTETPSNGENSRSMEDLHEEVNRQLMMLLQKP"
XX
SQ Sequence 2746 BP; 733 A; 542 C; 622 G; 849 T; 0 other;
eu867513 Length: 2746 13-JUN-2013 Type: N Check: 8333 ..
1 accggatggc cgcgaatttt ttgtggcccc cgcaacgcat ttacatgtgg
51 accaatgaaa ttggctcctc gtggcttaat tgttttgtgg tcccttattt
101 aaacttgctc accaagtagt gcactccgca ctatgtggga tccattagta
151 aacgagtttc ccgaaaccgt tcacggtttt agatgtatgt tagcagttaa
201 atatctgcag ttagtagaga agacttattc tcctgataca ttagggcacg
251 atttaattag ggatttaatt tcagtaatta gggctagaaa ttatgtcgaa
301 gcgaccagca gatataatca tttccacgcc cgcttcgaag gtacgtcgcc
351 gtctcaactt cgacagccca tatgtgagcc gtgctgctgc ccccattgtc
401 cgcgtcacca aagcaagagc atgggcgaac aggcccatga acagaaaacc
451 caggatgtac aggatgtaca gaagtcctga tgtccctaga ggatgtgaag
501 gcccatgtaa gggccagtcg tttgagtcca gacatgacat tcagcatata
551 ggtaaagtca tgtgtgtcag tgatgttacg cgtggaactg ggctgactca
601 ccgagtgggt aaaaggtttt gtgttaaatc cgtttatgtc ttgggtaaga
651 tatggatgga cgaaaatatt aagaccaaga accacactaa cagtgttatg
701 ttttttttag ttagggatcg taggcctgtg gataaacctc aagattttgg
751 tgaggttttt aacatgtttg ataatgagcc cagtacggct actgtgaaga
801 atgttcatcg tgataggtat caagtgcttc ggaaatggca tgcaactgtt
851 acgggtggac aatatgcgtc aaaggaacaa gctcttgtga agaagtttgt
901 tagggttaat aattatgttg tgtataacca gcaagaagct ggcaagtatg
951 aaaatcattc tgagaatgcg ttaatgttgt atatggcatg tacgcatgcc
1001 tctaacccag tgtatgctac tttgaagata cggatctatt tctatgattc
1051 tgtaacaaat taataaatat tgaattttat tgaataagat tggtctacat
1101 atacaatgtg ttctaataca tcccataata catgatcaac tgcacgaatt
1151 acattattaa tactgataat tcctaaatta tttaaatatt taagcacttg
1201 ggtcttaaag acccttaaga attgcccagt cggaggctgt gaagtcatcc
1251 agattcggta ggctagaaaa cacttgtgta tctccaacgc tttcctcagg
1301 ttgtaattga actgtatttg gacggtgatg ctgtcctctt tcatgagaaa
1351 tggccggttc tggtgttctg ttatcttgaa atacagggga ttttgattct
1401 cccaggtata cacgccattc tctgcttgag ctgcagtgat gagttcccct
1451 gtgcgtgaat ccatggttgt ggcaggctaa tgctatgaag tatgaacacc
1501 cacaagggag atcaacacgt cgacgcctcg tccccttctt ggctagcctg
1551 tgctgcactt tgattggaac ctgagtagag tgggccttcg agggtgacga
1601 agatcgcatt ctttaaagcc caatttctga gtgcattatt cttctcttca
1651 tccaagaact ctttataact tgaattaggt cctggattgc agaggaagat
1701 agtgggaatt ccgcctttaa tttgaactgg ctttccgtat ttggtatttg
1751 attgccagtc cctttgggcc cccatgaatt ctttaaagtg ctttaggtag
1801 tggggatcta cgtcatcgat gacgttatac cacgcatcat tgctgtaaac
1851 tttggggctt agatctaaat gaccgcatag gtaattatga ggccctaatg
1901 acctagccca catcgtttta cccgtacgac tgtctccctc aattactata
1951 ctttgaggcc tcagaggccg cgcagcggca accatgacat tttctgagac
2001 ccattcttca agttcttcag gaacttgatc aaaagaagaa gataaaaaag
2051 gcgaaatata aacctccaac ggaggactaa aaatcctatc taaattagaa
2101 tttaaattat gatattgaaa aataaatttt tctgggagtt tctcccttat
2151 tatagccatt gcagcttctt tagagcctgc atttagggct tctgcagcag
2201 catcattagc tgtctgttga cctcctcgtg cagatcttcc atcgatctgg
2251 aattctcccc attcgagggt gtctccgtcc ttgtcgatgt aggacttgac
2301 gtcggtgctg gatttagctc tctgaatgtt cggatggaaa tgtgctgacc
2351 tgtttgggga taccaggtcg aagaatcgtt gattcttgca ctgatatttc
2401 ccttcgaact ggatgagcac atggagatga gggctcccat ctttgtgtag
2451 ttctctgaag atcttgatgt attttttgtt tgttgggggt tggagattta
2501 ataataggaa aagtgcctct tctttagtaa gggagcactt gggataagtg
2551 agaaaataat ttttggcatt tatttttaac cgattcgggg ctgccatgtt
2601 gacttagtca atcggtgtct ctcaaccttc tctatgtatc ggtgtatcgg
2651 agtcctatat atatggagac tccaatggca taattgtaat aacaaaactt
2701 taatttgaaa tccttaaggc tccaaagcgg ccatccgtct aatatt