Sequence of DPV Carrot virus S
Carrot carlavirus WM-2008 triple gene block protein 1 gene, partial cds; and triple gene block protein 2, triple gene block protein 3, coat protein, and nucleic acid binding protein genes, complete cds.
ACC No: EU881919
Dated: 2008-08-13 | Length: 2235 | CRC: -1746957809
ID EU881919; SV 1; linear; genomic RNA; STD; VRL; 2235 BP.
XX
AC EU881919;
XX
DT 13-AUG-2008 (Rel. 96, Created)
DT 13-AUG-2008 (Rel. 96, Last updated, Version 1)
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DE Carrot carlavirus WM-2008 triple gene block protein 1 gene, partial cds;
DE and triple gene block protein 2, triple gene block protein 3, coat protein,
DE and nucleic acid binding protein genes, complete cds.
XX
KW .
XX
OS Carrot carlavirus WM-2008
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Flexiviridae;
OC Carlavirus; unclassified Carlavirus.
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RN [1]
RP 1-2235
RA Menzel W., Vetten H.-J.;
RT "Partial nucleotide sequence of a new carlavirus from carrot";
RL Unpublished.
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RN [2]
RP 1-2235
RA Menzel W., Vetten H.-J.;
RT ;
RL Submitted (10-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Institute of Plant Diseases and Plant Protection, Leibniz University of
RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .2235
FT /organism="Carrot carlavirus WM-2008"
FT /specific_host="Daucus carota"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /db_xref="taxon:552517"
FT CDS <1. .159
FT /codon_start=1
FT /product="triple gene block protein 1"
FT /note="TGB1"
FT /protein_id="ACG60021.1"
FT /translation="FRGITCEVVTLLTSEETIPEDQRSEFYVALTRHREKLIILCPNAF
FT FCASRQL"
FT CDS 128. .481
FT /codon_start=1
FT /product="triple gene block protein 2"
FT /note="TGB2"
FT /protein_id="ACG60022.1"
FT /translation="MPFSAPPDNSKAVLAVAVGLSLAVITFALTRNNLPQVGDNIHSLP
FT HGGCYSDGTKRISYFAPQEKFPSSNLLKTSNSPVIILSILGLSILIYLSSKFSTKCQIC
FT GREGCEGNATGRS"
FT CDS 462. .668
FT /codon_start=1
FT /product="triple gene block protein 3"
FT /note="TGB3"
FT /protein_id="ACG60023.1"
FT /translation="MPLGDLKILFLGFFCFISALAILNLLSGSSNNLCVVVITGESIKI
FT SGCVFDDNFAEYARTLTIPNHWG"
FT CDS 769. .1671
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="ACG60024.1"
FT /translation="MGGSSADAVKDQKKIKPEDKEAKEIEDLRVPNSRLTLEVQAEADK
FT MKNHKILMERFERLKNAISDNLTNPTLSNYAMPQTQAPKIVDSYKADMTNIFAKPSIEN
FT FLSLGWMPESNSMATSEQISKIMAEWEKLGVPKKSLAQATWAYCRYCVGASSSPHMDPN
FT AADEQVFGHVTRDAMGAVIKKHVTLRQFNRFFAPIMWNYMITMNLPPSDWQRKNFTEDT
FT KFAAFDCFDFVMNPAAHQPLEGLIRKPTKEEVIANQTFKSIALNRRAQNDRFANLGVEI
FT TGGKFGCDKKMTFRESSCG"
FT CDS 1738. .2127
FT /codon_start=1
FT /product="nucleic acid binding protein"
FT /note="NABP"
FT /protein_id="ACG60025.1"
FT /translation="MHKYNLHVLCALNKAEPKLPAQVIEIIWVKSSIHRENYILSSCKP
FT KGTGTSKSSVKRRAARFGRCANCGRYSHNGACKWSTSQSNSEFKDFLQIGAINYCNERP
FT IRKNSVIEQVITSERLRLLNIKDVE"
FT 3'UTR 2128. .2235
XX
SQ Sequence 2235 BP; 667 A; 385 C; 510 G; 673 T; 0 other;
eu881919 Length: 2235 13-AUG-2008 Type: N Check: 8677 ..
1 ttcagaggaa taacttgcga ggttgtgacc ctattgacta gtgaagaaac
51 gatcccagaa gatcagcggt cagaatttta cgtggcatta acaagacaca
101 gggagaagct aattattttg tgtccgaatg cctttttctg cgcctccaga
151 caactctaaa gctgtgctcg ccgtagcggt aggtcttagc ttagctgtaa
201 ttacttttgc attgactagg aataatttgc ctcaagtcgg ggataatatt
251 cacagtttgc cccacggtgg ttgctattct gacggtacga aaaggatttc
301 ttatttcgct ccgcaagaga agtttccctc gagtaatttg ctcaaaactt
351 caaatagtcc tgtgataatt ttaagtatat tgggattatc tatccttatt
401 tacttgagtt caaaattcag tactaagtgc cagatttgtg gcagagaagg
451 ttgtgagggg aatgccactg ggcgatctta agatcctctt tcttgggttc
501 ttctgtttta tttctgcatt agctattttg aatttactga gtggtagttc
551 caataacttg tgtgttgtag taataactgg ggagtcaatt aaaatcagtg
601 gttgtgtttt cgacgataat tttgcagaat acgcaagaac tttgacaata
651 cccaaccatt ggggttgatt ggtactctta ggcttaggag taactgtatt
701 gaatattaaa tagaactgat ctgagtgtgt gttttaacta gatttgtgtg
751 ttatttctaa catttgctat gggtgggagt agtgcagatg ctgtgaaaga
801 tcaaaagaag atcaaacccg aggataaaga agctaaggag attgaagatt
851 taagggttcc caatagcagg ttgacccttg aagttcaagc tgaggctgat
901 aaaatgaaaa accacaagat cctcatggaa aggtttgaac gattgaagaa
951 tgctattagc gataatctca ctaacccaac tctttctaat tatgctatgc
1001 ctcaaactca agcgccaaag atagtcgata gttacaaggc ggacatgacg
1051 aacatttttg ccaagccatc tatcgaaaat ttcctgagtt taggatggat
1101 gcccgagtct aattcaatgg ccacttctga gcaaatatcg aaaatcatgg
1151 ctgagtggga gaagctcggg gtgcctaaga aaagcttagc ccaagctact
1201 tgggcttatt gtcggtactg tgttggtgct tcaagttctc cacatatgga
1251 tcctaacgct gcagatgagc aggtgtttgg gcacgtcact agggatgcta
1301 tgggtgctgt aatcaaaaaa cacgtgactt tgcggcaatt taatagattc
1351 tttgctccaa tcatgtggaa ttatatgatt actatgaatt tacctccatc
1401 agattggcaa cgtaagaatt tcactgaaga tacaaaattt gccgcttttg
1451 actgttttga tttcgttatg aatcctgctg ctcaccaacc tcttgaaggt
1501 ctgataagaa agccaacaaa agaggaggtc atagcgaacc aaacctttaa
1551 gagcattgct ttaaacagaa gggctcaaaa tgatcggttt gctaatctgg
1601 gcgtagaaat cactggggga aagtttggat gcgacaagaa aatgacgttc
1651 cgtgagagca gttgcggttg aaaactcaga tcaacaatat tcttgggcaa
1701 ttcagtttat aacttctgaa ttcaaaactg aaaagttatg cataagtaca
1751 atttacatgt gttgtgtgct ttgaataaag ctgagccgaa attaccggct
1801 caggttattg agataatatg ggtgaaatct tccatacata gggagaacta
1851 tatactcagt tcgtgtaaac caaaagggac gggcacttct aaaagcagtg
1901 ttaaaaggag ggccgctcga tttggaaggt gtgctaattg tggtaggtat
1951 tcccataatg gggcttgcaa gtggtcaact agtcagagta atagtgagtt
2001 caaagacttt ttgcagattg gggctattaa ttactgtaat gaacggccaa
2051 ttcgcaaaaa ctctgtgatt gaacaagtga ttacttctga aaggttaagg
2101 ctacttaata ttaaagatgt agaataaggc atttcaacgc ctcaaagtgt
2151 tcgctgatag accgtactaa tagtctattc cagaaactca gacttaactt
2201 gagtattgct ggtaagtttt atctattttg cttat