Sequence of DPV Citrus yellow mosaic virus
Citrus yellow mosaic virus from India, complete genome.
ACC No: EU884191
Dated: 2008-09-17 | Length: 7522 | CRC: -861607075
ID EU884191; SV 1; circular; genomic DNA; STD; VRL; 7522 BP.
XX
AC EU884191;
XX
DT 17-SEP-2008 (Rel. 97, Created)
DT 17-SEP-2008 (Rel. 97, Last updated, Version 1)
XX
DE Citrus yellow mosaic virus from India, complete genome.
XX
KW .
XX
OS Citrus yellow mosaic virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7522
RA Baranwal V.K., Singh J.;
RT "Molecular characterization of Citrus yellow mosaic virus (CMBV) infecting
RT Rangpur lime";
RL Unpublished.
XX
RN [2]
RP 1-7522
RA Baranwal V.K., Singh J.;
RT ;
RL Submitted (06-JUN-2008) to the EMBL/GenBank/DDBJ databases.
RL Plant Virology Unit, Division of Plant Pathology, Indian Agriculture
RL Research Institute, Pusa Road, New Delhi, Delhi 110012, India
XX
FH Key Location/Qualifiers
FH
FT source 1. .7522
FT /organism="Citrus yellow mosaic virus"
FT /specific_host="Rangpur lime"
FT /mol_type="genomic DNA"
FT /country="India:Tirupati, Andhra Pardesh"
FT /db_xref="taxon:174178"
FT CDS 232. .663
FT /codon_start=1
FT /product="unknown"
FT /note="ORFI"
FT /protein_id="ACH86205.1"
FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY
FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKTEVKALVTE
FT IAKQPKLVEAQALQLTENLNQKLDRVESLIAKVERWVHS"
FT CDS 660. .1076
FT /codon_start=1
FT /product="unknown"
FT /note="ORFII"
FT /protein_id="ACH86206.1"
FT /translation="MNYQTTEKTPTYKRALEATEPINSPSLGFVNPEEYSGGITGTKAL
FT IKQNNLLIQLVVELSVNVNTLSDQVAQLAKQLGKQPQQGSSTTALPDDLVDKLRNLSLG
FT TEKKQEKRGTFYAYKDPYLIYKEEVEKLKKQQQS"
FT misc_feature 1073. .6991
FT /note="nonfunctional polyprotein due to mutation; ORFIII"
FT CDS 1073. .2464
FT /codon_start=1
FT /product="unknown"
FT /note="ORFIIIA"
FT /protein_id="ACH86210.1"
FT /translation="MSTSRARTIVEQLPPATTARVEERNNTPLYDDQIRDYRQWQRRRH
FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIH
FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVV
FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG
FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLR
FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEVPLDEDEEQIR
FT NHTIALWREENEVWDTLGAPSGKFDFYVRYTRPAHALQNPAHIIATGWDDLDNNPSPSS
FT PSNAIRTYQTPSSTPSSDEDDDISYLQYLAQQSPVPPPTQDFTNPFSEGGGESTLPLPI
FT ISTTF"
FT CDS 2049. .2495
FT /codon_start=1
FT /product="unknown"
FT /note="ORFIV"
FT /protein_id="ACH86207.1"
FT /translation="MMRRYPLMRMRNRSVITPLLYGVRKTRYGIPLVHLRVNLIFMFVI
FT PDLHMLYKTLLTSLPLVGMILIIILPHPVLRMLFVPTKPLPLLPLLMRMMIYLTSNILL
FT SNHLSLLLHRILPILFRKVVGSLPYPYPSFQPPFDLQSDDSMEQ"
FT CDS 2519. .6991
FT /codon_start=1
FT /product="unknown"
FT /note="ORFIIIB"
FT /protein_id="ACH86211.1"
FT /translation="MSQSNDSPAQSPNVVFDFDRYSALTSEDDVVQSAWISENLFRENT
FT GNGEVHNLVPPRPDTPRGDEVKGTQESTAHTIAVTTEGPEHEAEFDYPAFAKLQAHEES
FT GQLKPKTEKVLSSAISSYNPPRDTAMTPVAYPPAQNVASPSYNPSPQMPMFEGYYPKRP
FT NFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQGITDPKDKA
FT DFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLEDPATGS
FT TAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLGQ
FT RMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR
FT SGEKRYGVRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHFARECPSDRRNVK
FT RVAMFEGLDLPDDCEIVSIDEGEPDSDAIFSISEGEETGAIEEQCFVFQEECNGTYWLG
FT KRGGYQDLVQISKEIYYCQHEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSC
FT LMCGPTYFNKKITVQPMPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQER
FT ELQLQLEQSRKELAGTDARRRKDKGVVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKN
FT MLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQ
FT VKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVRLEGNTITFY
FT KQITSINTRLAAPLIQQDEEKEEELNLEEHRLIQEMVAYSTERPFVHFQQKFAGLIQEL
FT KAQGYIGEEPMKYWAKNRVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRRHVEALLKIG
FT AIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQT
FT ILQRLKGSTIFSKFDLKSGFQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQ
FT RKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQA
FT EIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLL
FT SPLYAKVSPTGERRVNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGV
FT CKWKIAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNSFKIYYLDKPSLCLRT
FT DCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKNNHLADALSRLVTGF
FT VFAEPQCQDKFQDDLGKLEAALQEKKEAPQAMHEEYVSLLIRSADRITLSLCSMRDSSR
FT NRTYSCRPGKEPTKALICEQKSCQSKGDLGSMKTMHSRSASNQQGNWWLSTSTNSLTSE
FT AKRQETTHMPISYPHAIGTTSNCAKWSSY"
FT CDS 3951. .4238
FT /codon_start=1
FT /product="unknown"
FT /note="ORFV"
FT /protein_id="ACH86208.1"
FT /translation="MKASQTATPSSVFQKEKKLELLRNNVLCSRKNAMEHIGLVKEVDI
FT RISCKFPKKSIIVSTNGRRINPLMIRRMFGVTPARGKPLKELAYIASYAT"
FT CDS 6565. .7029
FT /codon_start=1
FT /product="unknown"
FT /note="ORFVI"
FT /protein_id="ACH86209.1"
FT /translation="MSRQVPGRFREVGSSSSGEERGTASNARRICLPVDQISGPHYPLA
FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLREYEDYALQECIQSARQLVALH
FT QHKLAYIRSKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV"
XX
SQ Sequence 7522 BP; 2321 A; 1620 C; 1671 G; 1910 T; 0 other;
eu884191 Length: 7522 17-SEP-2008 Type: N Check: 9449 ..
1 tggtatcagc agcttggtta tgttcttaca acgatgggag cttaaaacct
51 tccattaggt ctgaggaaag agttggttgt atggtgtgtt aagttcctat
101 ctgtactatt attcctgtgt tcttgatata gaaaacgatc atcgcgaaaa
151 gggtgaaggc actatatctg gcagcgagag aagagtaagt ccagtgaaac
201 ccttcgcatg acgctaaagg tgatctaatc tatgtctaga atttgggaag
251 aagcaataca gagatggtat gagacatccc atacagctaa tctcgagtac
301 ttagatctag cttcaaaacc taaagtttcc aattcagaaa tctcacataa
351 ccttgctgta gtttatgacc gtttaagtct gtttagccgt gtctctatta
401 aaaacttcaa aagtatccaa gaaaccttag aaaaacaaga ccttagaatc
451 caaaaacttg agtccagtct gaaaacctta actagtgagt ttatagccca
501 taaaccgttg tccaaaactg aggtgaaggc cttagtaaca gaaattgcca
551 aacagcctaa gcttgttgaa gcacaggccc ttcagctcac agaaaacttg
601 aaccagaagc ttgatagggt tgaatccctg atagctaagg ttgaacggtg
651 ggttcattca tgaactatca gactactgag aaaaccccaa catacaagcg
701 agctcttgaa gcaactgagc ctattaacag tccatcactt ggatttgtta
751 acccggagga atattctggt ggtattactg gtactaaagc tctcattaag
801 caaaacaatt tgcttatcca acttgtggtg gagctttctg tcaacgtcaa
851 cactttgtct gatcaagttg ctcaactagc aaagcaactt ggaaagcaac
901 ctcagcaagg ctcatcaaca acagccttac ctgacgatct ggttgacaaa
951 ctcagaaacc tttctctagg tactgagaag aagcaggaga agcgtggtac
1001 cttctacgct tacaaagatc catacctcat ctacaaggag gaggtagaaa
1051 aactgaaaaa gcagcaacaa tcatgagtac cagccgtgcc agaaccatag
1101 tggagcaact ccctcctgct acaacagctc gagtggaaga aagaaataat
1151 actcccctct atgatgatca aatacgggat tacaggcagt ggcagcgacg
1201 gcgtcacaac atgggaagga gatggaatca actgataggt cgaccctaca
1251 atcagacctt ggaacaagtg gtagacccag aggtagcttt acagctatcg
1301 atgcaggaac gtgcaaggct agtaccagca gaggtacttt acaggtcaag
1351 aaatgatgac cggcaccacc aagtttacat tcacagatca gaggaggcaa
1401 tcctttgtgt tgatggtgat caagttgacc gattacttat acaaccggaa
1451 agtgctgaac aactgaacag gagcggtatg tcctttattc atatgggcat
1501 agttcaagtc cggattcaga tcctacacag gcaacatgag ggaacaacag
1551 cccttgtggt tttcagggac aatcggtggc aaggagacca gtcaatattc
1601 gctaccatgg agcttgattt aactaaaggt atgcagatgg tgtacataat
1651 cccggacacc atgatgaccg taagagactt ctgccgaaat gttcaaattt
1701 ccatcctcac aaaaggatat gggaattggc agaatggtga ggcgaattta
1751 cttgtcacaa ggggaatcgt tggacgacta tctaacaccc cgaatgtagc
1801 ctttgcctat cagatccaga atgttacgga ttatctagtc agtcatggaa
1851 ttcaagcatt gccaggacgg cggtattcat ctgcagatgt acagggccaa
1901 caatggtttt tacgaccatc caatattcca gctgttccaa tggccccaac
1951 taacgtggat acacgtaaca tgatagacgg atccatttct ctcagattca
2001 acagttacca accagctcca gatccggcac ctgttgctta taatcagcat
2051 gatgaggagg taccccttga tgaggatgag gaacagatcc gtaatcacac
2101 cattgcttta tggcgtgagg aaaacgaggt atgggatacc cttggtgcac
2151 cttcgggtaa atttgatttt tatgttcgtt atacccgacc tgcacatgct
2201 ctacaaaacc ctgctcacat cattgccact ggttgggatg atcttgataa
2251 taatccttcc ccatccagtc cttcgaatgc tattcgtacc taccaaaccc
2301 cttcctctac tccctcttct gatgaggatg atgatatatc ttacctccaa
2351 tatcttgctc agcaatcacc tgtccctcct cctacacagg attttaccaa
2401 tcctttttcg gaaggtggtg gggagtctac cctaccccta cccatcattt
2451 caaccacctt ttgatttaca gtctgatgac tctatggaac aatagcaaca
2501 tgggatgaat ttgatacaat gagtcaatct aacgattctc ctgcacaaag
2551 cccaaatgtt gtatttgatt ttgacaggta ttctgcctta acaagtgaag
2601 atgacgtggt tcaatcagcc tggatttctg aaaatctatt tcgtgaaaac
2651 accggaaacg gtgaagttca caatcttgtt ccgcctagac cggacacccc
2701 tcggggtgat gaggtcaaag gaactcaaga atccacggct cacactattg
2751 cagtaactac agaaggaccg gagcatgaag ccgagtttga ttatccggct
2801 tttgccaaat tacaagccca tgaagagtca gggcaactca agcccaaaac
2851 tgaaaaggtc ctgtcctcag caatttcttc atataaccca ccaagggata
2901 ctgcaatgac acctgttgca tatccaccgg ctcaaaacgt tgccagccca
2951 agttacaatc caagcccaca aatgcccatg tttgaagggt attatcccaa
3001 aaggccaaat ttcaagaggg ataatcatgc ctttatcagt cttccctcgg
3051 cccaacaaaa tactggggct ttattcatta tgcctcaaca aattggcctg
3101 tttcatgagg tttttacttc atgggaagca atcaccaaag cttatgttgc
3151 tcaacagggt atcacagacc caaaagataa ggccgatttc attgaaaata
3201 tgttgggtcc aacagagaaa ataatttgga ctcaatggcg aatgggctac
3251 gccgatgaat atgagaacct tgtcacaaca gctgacggac gtgagggtac
3301 tcagaatatc ctctctcaga tgcgaagggt cttttcctta gaagatccag
3351 caacaggttc aactgcagtc caagatgaag cctatagaga tttggagagg
3401 cttacttgtg attctgtcaa gcatatagtt caatatttaa atgactttat
3451 gcggattgca gcaaaaactg ggcgcatgtt cataggccca gagctaagtg
3501 aaaagttgtg gcttaaaatg ccaggtgact taggccaaag gatgaagaag
3551 gcctatgagg aaaaacatcc agggaatatt gttggagttt gccctcggat
3601 cctattcgct tacaagtacc ttgaaggcga gtgtaaagat gcagcgttca
3651 gacgctcctt gaagaactta tctttttgca gctcaatccc catcccaggc
3701 tattacggtg gtagaagtgg tgaaaagcgt tacggtgtaa ggcgcacaac
3751 cacttataaa gggaagcctc acaacacaca tgcaaggatt gagaaaacaa
3801 agcatttgcg caataaaaag tgcaagtgtt atctttgtgg agaggaaggt
3851 cacttcgctc gggaatgtcc aagtgaccgg cgaaatgtga aacgagttgc
3901 aatgtttgaa ggcttagacc taccagacga ttgtgaaata gtctccatag
3951 atgaaggcga gccagacagc gacgccatct tcagtatttc agaaggagaa
4001 gaaactggag ctattgagga acaatgtttt gtgttccagg aagaatgcaa
4051 tggaacatat tggcttggta aaagaggtgg atatcaggat ctcgtgcaaa
4101 tttccaaaga aatctattat tgtcagcacg aatgggagga gaatcaaccc
4151 attgatgatc cggcgcatgt tcggtgttac ccctgcaaga gggaaaccac
4201 tcaaagagct cgcttacatt gcaagctatg ccacataaca tcttgtctta
4251 tgtgtggccc cacctatttc aacaaaaaga ttactgtcca gccaatgcct
4301 caagcaccct tcaaccaaaa aggattgtta cagcaacaac aggagtacat
4351 cgcctggtgc aacaatgaaa ttgccagatt aaaggaagaa gttgctttct
4401 ataagcagct tgcccaggaa agagagttgc aattacaact cgagcagtcc
4451 agaaaggaac tcgcaggaac agacgctcgt aggcgaaaag acaaaggagt
4501 agtaattgat gagggatcat gctacttcaa cccagaagaa acaaccagaa
4551 tcattgctca tggagataca caggttacta agaccagacc tgtgaagaat
4601 atgctataca acatggatgt gcgaatggag attcccggca tcccagcttt
4651 tacagtcaag gcgattcttg acacaggagc aacaacctgc tgcattgaca
4701 gtaggagtgt gccaaaagat gccttggagg aaaattcttt tgtggtgaat
4751 ttctcaggca tcaactctaa acagcaagtc aaacagaaga tcaaggcagg
4801 aaaaatgttc attaatgagc attatttccg gattccatac tgttacagct
4851 tcgaaatgca aattggtgat ggcatccaac tcattctagg atgcaatttt
4901 atacgaagta tgtacggcgg tgttcgatta gagggtaata ctataacctt
4951 ctataagcag atcacaagca tcaacactcg acttgctgca cctcttatcc
5001 agcaggacga agaaaaggaa gaggagctta acctagaaga gcacaggtta
5051 atccaggaaa tggttgcata ctctactgag cggccatttg ttcatttcca
5101 acaaaaattt gcaggactta ttcaggagtt aaaagcccag ggatatattg
5151 gggaagagcc tatgaagtat tgggccaaaa acagagttgt ttgtcatctg
5201 gacattaaaa atccagatat ggtgattgaa gatcgcccac tgaagcatgt
5251 gacaccccaa atggaggaaa gctttcgcag acatgtggag gcactgttaa
5301 aaattggtgc gatcaggccc agtaaaagtc gacacagaac aacagccatc
5351 atagtcaact ctggaaccag tattgaccct attacaggga aggaagtcaa
5401 aggcaaggag aggatggtct ttaactataa aaggttaaat gacttaacca
5451 acaaagatca atacagcctt cctggaatcc agacaatcct gcaaagatta
5501 aaggggagca ctatattctc caaatttgac cttaaaagtg gctttcagca
5551 ggtagcaatg catccagatt cagttgaatg gacagccttt tgggtgccta
5601 gcggtctcta tgaatggcta gtcatgccat ttggattaaa gaatgctcca
5651 gcagtgtttc agagaaaaat ggatcactgt ttcaaaggaa cggaggcctt
5701 tattgctgtt tatatcgatg acatcctggt gttctcaaaa actgaaaagg
5751 agcatgagga gcacttacag attatgctct cgatctgcca aaggaatggg
5801 cttattctga gcccaacaaa gatgaaaatt gcccaagctg agattgaatt
5851 ccttggggca atcattcaca acgggcttat caagttacag ccccatattg
5901 ttcagaagtt gctaactttt accaacaagc aacttgagga ggtcaaaggg
5951 cttagatcat ggcttggtct attgaactat gcaaggagtt acattcctca
6001 tatgggccgc ctactcagcc cattgtatgc caaagtcagc ccaactggtg
6051 aacgaagagt gaacaggcaa gactgggcct taattgacaa aataagagcc
6101 caagtccaga acctgccagc cttggagcta ccacctgcag actgtttcat
6151 catcattgaa acggatggat gcatggatgg ttggggagga gtctgtaaat
6201 ggaaaatagc acagtacgac ccacgaagtt cagaaagggt ttgtgcttat
6251 gcaagtggaa agttcaaccc tccaaagtca acaatcgatg cggagataca
6301 tgcagtgatg aacagcctca acagcttcaa aatttactac ctagacaagc
6351 ctagtttatg tttaaggact gattgtcaag ctattattag cttctttaat
6401 aagtccaatg ttaacaaacc gtctagggtt aggtggattg ctttcacaga
6451 tttccttact ggtctaggaa tccctgtaaa tatagagcat atagatggaa
6501 aaaataacca tctggctgat gctctgtcca gattagtaac cggttttgtt
6551 tttgcagaac cacaatgtca agacaagttc caggacgatt tagggaagtt
6601 ggaagcagct cttcaggaga agaaagaggc accgcaagca atgcacgaag
6651 aatatgtctc cctgttgatc agatcagcgg accgcattac cctctcgctc
6701 tgctctatga gggactcgtc tcgcaacaga acctactcat gcaggccagg
6751 caaagaacca acgaaggcct taatttgcga acagaagtca tgccaatcca
6801 aaggcgactt agggagtatg aagactatgc actccaggag tgcatccaat
6851 cagcaaggca actggtggct ctccaccagc acaaactcgc ttacatcaga
6901 agcaaagcga caagagacaa cgcatatgcc gataagctac ccacatgcaa
6951 tcgggaccac gagcaactgt gcgaagtggt cgagctatta gaaggaatct
7001 cagaaagaat aagcgataca gctgtttagg acagctggct tcaatcatgg
7051 agcatggtgg acccccgcaa taatccaaaa gtttggtgtg ctttagttag
7101 tgcgtcttta tggaccacta ctttattgta ataattttcg tagtgcgctt
7151 tactttatga gtgcactctg ctttgtcttt atgcttttgt aagtgcgcta
7201 tagtacgccc gtctttatgc ttttttgtga tgcttatcct ttaagcatct
7251 tttgcttttt gcgtggcatc ctttagttca caatttaaag aatgacgatg
7301 gggcccaaaa tgtgcacccg gttctctaaa ttgctatata aggaagtgcc
7351 aaagccttgt ttttgcaagt caggaatacc tgagcataac ttggctaagc
7401 aaaagtttgt aagtgttcta agctttttct tgtaagcttt ctttctgttt
7451 caataaaatc tctcgttaat cgttgtgaac acatagttgt ttatttattt
7501 ttgtttgtgt gcgaattcga aa