Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak virus isolate BSA2 coat protein gene, partial cds.
ACC No: EU916831
Dated: 2009-03-03 | Length: 1330 | CRC: -1309466389
ID EU916831; SV 1; linear; genomic RNA; STD; VRL; 1330 BP.
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AC EU916831;
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DT 03-MAR-2009 (Rel. 100, Created)
DT 03-MAR-2009 (Rel. 100, Last updated, Version 1)
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DE Cassava brown streak virus isolate BSA2 coat protein gene, partial cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-1330
RX PUBMED; 19184340.
RA Mbanzibwa D.R., Tian Y.P., Tugume A.K., Mukasa S.B., Tairo F.,
RA Kyamanywa S., Kullaya A., Valkonen J.P.;
RT "Genetically distinct strains of Cassava brown streak virus in the Lake
RT Victoria basin and the Indian Ocean coastal area of East Africa";
RL Arch. Virol. 154(2):353-359(2009).
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RN [2]
RP 1-1330
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Mukasa S.B., Tairo F., Kyamanywa S.,
RA Kullaya A., Valkonen J.P.T.;
RT ;
RL Submitted (22-JUL-2008) to the EMBL/GenBank/DDBJ databases.
RL Applied Biology, University of Helsinki, Latokartanonkaari 7, Helsinki
RL 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1330
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="BSA2"
FT /mol_type="genomic RNA"
FT /country="Uganda"
FT /collection_date="2007"
FT /db_xref="taxon:137758"
FT CDS <1. .1104
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="ACK58210.1"
FT /translation="ALNQEEIEAEITALKKIWKDNGPTRTRSPFEARRLRVPQVERVNE
FT LLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNKQRSGKEVVDESQNNQQVDPRKPKF
FT KIRGDGNAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPDVIQNFLA
FT YIPPSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWIVNCIVNGTSDERKN
FT EKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNSVAAGKAF
FT VIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLFALAAPGD
FT DNNVDRERHTTHDVSANRHSYSGAAIE"
FT 3'UTR 1105. .1130
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SQ Sequence 1330 BP; 445 A; 203 C; 317 G; 365 T; 0 other;
eu916831 Length: 1330 03-MAR-2009 Type: N Check: 1479 ..
1 gccttaaatc aggaggagat tgaagcggag atcactgctc taaagaagat
51 atggaaggat aatggaccaa caagaacacg tagtccattt gaggctagga
101 gattgagagt cccacaagtt gagcgtgtaa atgagttact tcagaaactg
151 aaggatgaag gactgcaaac aaagaagagg ccatgtggag aaccagatga
201 cggagaagtg gtcgatgatg atagtgatga tggtaataag cagagatctg
251 gaaaggaagt tgttgatgaa agccagaata atcagcaagt tgatccaaga
301 aagccgaaat tcaaaattag aggagatgga aacgccatta gacgggatga
351 cattgataaa attccaacta atgctcttga gatcaagaag actttcaagc
401 ctccaaaggt gtcacagtcg gcttacattt ggattccacg ctctcaaagg
451 gataatctaa cccctgatgt aattcagaat ttcctggcat atatacctcc
501 atctcatgct atagataatc aacttgcttc aggaattgaa gttgagaact
551 gggcaattga ggttgctaaa gcatatggag ttaatataca ggaattttat
601 cgcacaattt taccagcttg gatagtgaac tgtatagtga atggtactag
651 cgatgaaagg aaaaatgaga agtcgtggcg agcagtcgag ttgaattctc
701 agggggaaga tgttgatgat tttgagtatc caatggaacc aatgtacaaa
751 tttgcattgc caactatgag gaaggttatg agaaacttct ctagccaagc
801 tatcctcatg tatcagaata gtgttgctgc aggtaaggcg tttgtgataa
851 aagctgctag aaatgctgga tacacaagta ttgaaaataa atggctaggt
901 atagattttc ttgccgaagc ccaattgtcc cagagccaac ttgatatcaa
951 gcaccagatt ctggcagcga atgttggtag aacaaagaca agactgtttg
1001 cattagcagc tcctggggac gataacaatg tagatagaga aaggcacacg
1051 acacacgatg tcagtgcgaa caggcacagt tatagtggtg ccgcaattga
1101 ataaataaaa tattagtgtt tctatttgag tttgaatgaa attatagctt
1151 ggttggaaag ctaagttgta tttcaaattt gaattcaagt acttaaatat
1201 tgtattttgt tttaagtttg gtggagtttt ggattgccaa ttatattttg
1251 gttagataag ccaaaatgta ttttggagat ctttctccat atccttttgt
1301 ttggtgtaga aatatacctt ataaaagtcc