Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak virus isolate LWR2 polyprotein (pol) gene, partial cds.
ACC No: FJ025999
Dated: 2009-06-18 | Length: 3587 | CRC: 1706296945
ID FJ025999; SV 1; linear; genomic RNA; STD; VRL; 3587 BP.
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AC FJ025999;
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DT 15-MAY-2009 (Rel. 100, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 2)
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DE Cassava brown streak virus isolate LWR2 polyprotein (pol) gene, partial
DE cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-3587
RX PUBMED; 19386713.
RA Mbanzibwa D.R., Tian Y., Mukasa S.B., Valkonen J.P.;
RT "Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1
RT pyrophosphatase implicated in reduction of mutations and a P1 proteinase
RT that suppresses RNA silencing but contains no HC-Pro";
RL J. Virol. 83(13):6934-6940(2009).
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RN [2]
RP 1-3587
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Valkonen J.P.T.;
RT ;
RL Submitted (14-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Applied Biology, University of Helsinki, Latokartnonkaari 7, Helsinki
RL 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .3587
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="LWR2"
FT /mol_type="genomic RNA"
FT /country="Uganda"
FT /collection_date="2007"
FT /db_xref="taxon:137758"
FT 5'UTR <1. .130
FT gene 131. .>3587
FT /gene="pol"
FT CDS 131. .>2254
FT /codon_start=1
FT /gene="pol"
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /protein_id="ACM48168.1"
FT /translation="MSTIQLFKTIRFGSFEPVKLDEGNNVIEKVPIDLLAGNDGSGPEE
FT QSEQKYHRKESGESWRKVTDLYSVIGNSVYCRSYVAMKNFLNDTKWGGLFKNKKGQELK
FT AAARLRRATSYGFMYDPVACAFECPVCRTKATALEAFTSDCDHCFEVKHIDDDRIVQTE
FT TKFYPINPIELDVEDNLVEAASLEWLKGEVEERVVDRVLLLEDKEIRVTKKALVKRRAE
FT TKLVANVADLTKKLTEICCESGIPIIDIDNSKRKAIPMVKLKHIFGKIECDDMFGEDRY
FT FLEHSNAGKIFRSCERITYRMIRPGWSGAIILRDNVQGDDHDKFDFINDICVVQGKNLI
FT SNKIENAMRVKTETEMDLIDLYSFNLSWAKSKDKFIKHFESDTTQLIRSCCTPSTLWLY
FT ARKARFYKFVDHMILKGSPIIDILVKMEYVGKHLDLFNSVEDVCTEYSHFMKELISETV
FT NDKSDPDVLRVRNLIRAHFESVLEYNKYELIDRIIEKKTQLEAQEIMSRELIRHQYGEL
FT FSWRERLYLKLGIGSSNLYTYWVEREEKQSEKSSAISCIISKPGIEMLINWVSEVCKSK
FT YHSLVNCVDSGILFLWSRIVHLARVSVYGYWNLWFRQAMCVLFIFLVSNFSCKIVNYLK
FT TLIVNEKKLAIKNEEGFVEVQGRKEESFVLKWCAAATLFLSFLNYDWAVGCVSAIGKMK
FT TIFSALGPDFIEKQ"
FT mat_peptide 131. .1216
FT /gene="pol"
FT /product="P1 protein"
FT mat_peptide 1217. .2098
FT /gene="pol"
FT /product="P3 protein"
FT mat_peptide 2099. .2254
FT /gene="pol"
FT /product="6K1 protein"
FT gap 2255. .2354
FT /estimated_length=unknown
FT CDS <2355. .>3587
FT /codon_start=1
FT /gene="pol"
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /protein_id="ACM48169.1"
FT /translation="IILMIVVEYCKAVMESEGREMQFKYMCNGDDLILNVPDDEVSIIQ
FT SRFRELFSECGLDYNFDDVHKSIETIEYMSHSFMLKDDVYIPKLKKERIVAILEWERGD
FT EIMRTRSALNAAYIESYGYDDLMVEIERYAVFWATEKGCEYPLLDRKRVEGLYKDDHTD
FT INEEWLRGILPPSFEHCYVDTQTKDLRREEQPELRTESYDRTTQMQMKFPVTFVTGNFG
FT KLAEVKSILGIANDVIARNIDLPEVQGTPDEIVRKKAQLAVKMTNSPVLVEDTCLCFNA
FT FNGLPGPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYVHNESSDPIVFKGVVNGE
FT IVPPRGNNGFGWDPIFKPDECSCTFAEMSSSMKNDFSHRRRALEKVKSFLDNLVVKQEE
FT KKARVALTIDVQ"
FT mat_peptide <2355. .2909
FT /gene="pol"
FT /product="NIb protein"
FT mat_peptide 2910. .3587
FT /gene="pol"
FT /product="HAM1-like protein"
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SQ Sequence 3587 BP; 1126 A; 492 C; 841 G; 1028 T; 100 other;
fj025999 Length: 3587 18-JUN-2009 Type: N Check: 3309 ..
1 ataaacagga cataagaata cataaagata catcgcatac aaacactacg
51 cattcaaatt cgtgagaaag caagctgtta cgaaagttta cgatacatca
101 ttatatattc atagcactga atacctacag atgtcgacta tccagctatt
151 caagactatc agatttggtt cctttgagcc tgtcaagctt gatgaaggaa
201 acaatgttat agagaaggtc ccaattgatc ttctggcagg aaatgatggc
251 tctggtcctg aggagcaatc ggaacagaaa taccatagga aagaaagcgg
301 tgaaagttgg cggaaagtaa ccgacttata ttctgtaatt ggaaattctg
351 tttactgccg cagttacgta gcaatgaaaa actttctcaa tgatacaaag
401 tggggaggtc ttttcaaaaa taagaagggg caagaactaa aggctgctgc
451 aaggcttaga agggctacaa gctatggatt catgtatgat ccagttgctt
501 gtgcctttga atgccctgtt tgcagaacaa aggcaacagc attggaagca
551 tttacaagcg attgtgatca ttgtttcgaa gtcaagcaca ttgatgatga
601 taggatcgtt cagactgaaa caaagtttta tccaataaat cctattgaac
651 tggatgttga ggataactta gtggaagctg catcgctcga gtggttgaaa
701 ggtgaagtgg aagagagagt tgtagacagg gttttactac ttgaggacaa
751 ggagattcgt gttacaaaga aagctctagt taaaaggaga gctgagacaa
801 aactagtggc taatgttgct gatcttacca agaaattgac tgaaatttgc
851 tgtgagtctg gtatccctat cattgatatt gataacagca agaggaaagc
901 cattccgatg gtcaagctca agcatatctt tgggaaaatt gagtgtgatg
951 acatgtttgg ggaagatcgg tatttcctgg agcatagcaa tgcagggaaa
1001 attttccgat catgtgagag aattacttat aggatgattc gtcctggatg
1051 gagtggagca atcattctaa gagacaatgt tcagggagat gatcatgata
1101 agttcgactt tatcaatgat atttgtgttg ttcaagggaa gaatctaatt
1151 agcaacaaaa ttgagaacgc catgcgcgtc aagactgaaa cagaaatgga
1201 cttaattgat ttgtattctt tcaatcttag ttgggcgaaa tcaaaagata
1251 agttcattaa gcactttgaa agtgatacaa ctcaattaat tagatcgtgt
1301 tgcactccta gtacattgtg gttgtacgca aggaaagcca ggttttacaa
1351 atttgtggat cacatgatct taaagggtag tccaataatt gatatcctag
1401 ttaaaatgga gtatgttggc aagcatttgg acttgtttaa tagtgtcgaa
1451 gatgtgtgca ctgagtattc tcattttatg aaggagttaa ttagtgaaac
1501 tgtcaacgat aaatcagatc cagatgtgtt gcgcgttaga aatttgataa
1551 gagcgcattt tgaatcagtc ttagaatata ataagtatga gttgatagat
1601 aggataattg agaaaaaaac tcagttagaa gcacaagaaa ttatgtctcg
1651 cgagctcatc agacatcagt acggagagtt attttcttgg cgcgaacgtt
1701 tgtatttgaa actaggtata ggctcatcga atctctatac atactgggtg
1751 gaacgcgaag agaaacaatc agagaaatcg agtgcaatct cttgcatcat
1801 ttccaaaccg ggaatagaga tgttgataaa ttgggtctca gaagtgtgta
1851 agagtaaata tcatagtctt gtaaattgtg tcgatagtgg tattttgttc
1901 ttgtggtcta gaatagttca tttagcgaga gtctcagttt atggttattg
1951 gaatctttgg tttagacaag ctatgtgtgt gttgttcatt ttcttagttt
2001 caaatttctc ttgtaaaata gttaattatc ttaagacatt aattgtgaat
2051 gagaagaagc tagctataaa gaatgaagaa ggtttcgttg aagtacaagg
2101 ccgaaaggaa gagtcttttg ttttaaagtg gtgtgctgct gcaactctgt
2151 ttcttagttt tctaaactat gattgggcag ttggatgtgt atcagccatt
2201 ggaaagatga aaacaatatt tagtgcacta ggtccagatt tcatagaaaa
2251 gcaannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2351 nnnnattata ctaatgattg ttgtggaata ttgcaaggct gtcatggaga
2401 gtgagggaag agaaatgcaa ttcaagtaca tgtgtaatgg agatgacttg
2451 attctcaatg ttcctgatga tgaagtgagt ataatccaga gtaggttcag
2501 agagttgttt tcagaatgtg gtttggatta taattttgat gatgttcaca
2551 agtcaataga gactattgag tatatgagcc attcattcat gctgaaagat
2601 gatgtgtaca ttccaaagtt gaagaaagaa agaattgttg caattcttga
2651 atgggagaga ggtgatgaga ttatgcgaac acggagtgct cttaatgctg
2701 cttatatcga aagttatgga tatgatgatc ttatggttga aattgagcgg
2751 tacgcggttt tctgggctac cgaaaaaggt tgtgagtatc cattactaga
2801 taggaagcgt gtggaaggac tttacaaaga tgatcacaca gatattaatg
2851 aagaatggct gagaggtatt ttaccaccat cattcgagca ttgttatgtt
2901 gacacgcaaa ctaaggattt gagaagggaa gagcagcctg agttgagaac
2951 tgaaagttat gacagaacaa cccaaatgca gatgaagttc ccagtcacat
3001 ttgtgacagg aaattttgga aagttagctg aagtgaagtc tattcttggc
3051 attgcaaatg atgttatagc taggaacatt gatttaccag aagtgcaagg
3101 aaccccagat gagattgtga gaaagaaggc tcaattagca gtgaagatga
3151 ctaatagtcc tgttttagtc gaagacacgt gtctttgttt caatgctttt
3201 aatggactgc ctgggccata catcaaatgg tttctaaaag aattgggtct
3251 cgaaggtgtt gtcaaaatgc tgtcagcatt tggagataag tcagcatacg
3301 cactatgtac atttgcatat gtgcacaacg agtcgtctga tccaattgtg
3351 tttaaaggag ttgtgaatgg tgaaattgtg ccaccgcgag gtaacaatgg
3401 ttttggttgg gatcctatat tcaaacctga tgaatgtagt tgcacgtttg
3451 cagaaatgtc aagcagcatg aagaatgatt tttcccatag aagaagagct
3501 ttagagaaag ttaaatcgtt tcttgataac ttggtggtga agcaagagga
3551 gaagaaggca agggtggctc taacgattga tgttcag