Sequence of DPV Ugandan cassava brown streak virus
Cassava brown streak virus isolate BSA2 polyprotein (pol) gene, partial cds.
ACC No: FJ039522
Dated: 2009-06-18 | Length: 1113 | CRC: -140706494
ID FJ039522; SV 1; linear; genomic RNA; STD; VRL; 1113 BP.
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AC FJ039522;
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DT 15-MAY-2009 (Rel. 100, Created)
DT 18-JUN-2009 (Rel. 101, Last updated, Version 2)
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DE Cassava brown streak virus isolate BSA2 polyprotein (pol) gene, partial
DE cds.
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KW .
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OS Cassava brown streak virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
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RN [1]
RP 1-1113
RX PUBMED; 19386713.
RA Mbanzibwa D.R., Tian Y., Mukasa S.B., Valkonen J.P.;
RT "Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1
RT pyrophosphatase implicated in reduction of mutations and a P1 proteinase
RT that suppresses RNA silencing but contains no HC-Pro";
RL J. Virol. 83(13):6934-6940(2009).
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RN [2]
RP 1-1113
RA Mbanzibwa D.R., Tian Y., Tugume A.K., Valkonen J.P.T.;
RT ;
RL Submitted (18-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Applied Biology, University of Helsinki, Latokartnonkaari 7, Helsinki
RL 00790, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .1113
FT /organism="Cassava brown streak virus"
FT /host="cassava"
FT /isolate="BSA2"
FT /mol_type="genomic RNA"
FT /country="Uganda"
FT /collection_date="2007"
FT /db_xref="taxon:137758"
FT gene <1. .>1113
FT /gene="pol"
FT CDS <1. .>1113
FT /codon_start=1
FT /gene="pol"
FT /product="polyprotein"
FT /protein_id="ACM48178.1"
FT /translation="VSIIQSRFRELFSECGLDYNFDDVHKSIETIEYMSHSFMLKDDVY
FT IPKLKKERIVAILEWERGDEIMRTRSALNAAYIESYGYDDLMVEIERYAVFWATEKGCE
FT YPLLDRKRVEGLYKDDYTDINEEWLVGILPPSFEHCYVDTQTEDLRGREKLELRTESHD
FT GISQMQMKFPITFVTGNLGKLAEVKSILGISSDVMAKNIDLPEVQGTPDEIVIKKAQLA
FT VKMTNSPVLVEDTCLCFNAFNGLPGPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFA
FT YVHNELSDPVVFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSSSIKNDFSHRR
FT RALEKVKLFLDNLVVKQEKKKARVALTIDVQ"
FT mat_peptide <1. .435
FT /gene="pol"
FT /product="NIb protein"
FT mat_peptide 436. .1113
FT /gene="pol"
FT /product="HAM1-like protein"
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SQ Sequence 1113 BP; 357 A; 145 C; 279 G; 332 T; 0 other;
fj039522 Length: 1113 18-JUN-2009 Type: N Check: 6810 ..
1 gtgagcataa ttcagagtag gttcagggag ttgttttcag aatgtggttt
51 agattataat tttgatgatg ttcacaagtc aatagaaaca attgagtata
101 tgagccattc attcatgctg aaagatgatg tgtatattcc aaagttgaag
151 aaagaaagaa ttgttgcaat tcttgaatgg gagagaggtg atgagattat
201 gcgaacgcgg agtgctctta atgctgctta tattgaaagt tatggatatg
251 atgaccttat ggttgaaatt gagcggtatg cggttttctg ggctaccgag
301 aaaggttgtg agtatccatt actggataga aagcgtgtag aaggacttta
351 caaagatgat tacacagata tcaatgaaga atggctggta ggtattttac
401 caccatcatt cgaacattgt tatgttgaca cgcagactga ggatttgaga
451 ggaagagaga agcttgagtt gagaactgag agccatgatg gaatatccca
501 aatgcaaatg aagtttccaa ttacatttgt gacaggaaac ttgggaaaat
551 tagcagaagt gaagtctatt cttggcattt caagtgatgt tatggctaag
601 aacattgatt taccagaagt gcaaggaact ccggatgaaa ttgtgataaa
651 gaaagcgcaa ttagcagtga agatgactaa tagtcctgtt ttagtcgaag
701 atacatgtct ttgctttaat gctttcaatg gacttcctgg gccatacata
751 aaatggtttt taaaagaatt gggtcttgaa ggtgttgtta aaatgttgtc
801 agcatttgga gataaatcag cgtacgcact atgcacattc gcatatgtgc
851 acaatgaatt gtctgatcca gttgtgttta aaggagttgt aaatggtgaa
901 attgtgccgc cacgaggtaa caatggtttt ggttgggatc ctatatttaa
951 gcctgacgaa tgtagttgta cgttcgcaga aatgtcaagc agcattaaga
1001 atgatttttc ccacagaaga agagctttag agaaagtcaa gttgtttctt
1051 gataacttag tggtgaagca agagaagaag aaagcaagag tggctctaac
1101 gattgatgtt cag