Sequence of DPV Ornithogalum mosaic virus
Ornithogalum mosaic virus isolate LachX polyprotein gene, partial cds.
ACC No: FJ159372
Dated: 2008-09-28 | Length: 1647 | CRC: 2137339939
ID FJ159372; SV 1; linear; genomic RNA; STD; VRL; 1647 BP.
XX
AC FJ159372;
XX
DT 28-SEP-2008 (Rel. 97, Created)
DT 28-SEP-2008 (Rel. 97, Last updated, Version 1)
XX
DE Ornithogalum mosaic virus isolate LachX polyprotein gene, partial cds.
XX
KW .
XX
OS Ornithogalum mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1647
RA Hammond J., Reinsel M.D., Vaira A.M.;
RT "Potyvirus Diversity in Lachenalia and Ornithogalum";
RL Unpublished.
XX
RN [2]
RP 1-1647
RA Hammond J., Reinsel M.D., Vaira A.M.;
RT ;
RL Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Floral and Nursery Plants Research Unit, National Arboretum, US Department
RL of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD
RL 20705, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .1647
FT /organism="Ornithogalum mosaic virus"
FT /specific_host="Lachenalia"
FT /isolate="LachX"
FT /mol_type="genomic RNA"
FT /country="USA:Maryland"
FT /collection_date="2007"
FT /db_xref="taxon:12204"
FT CDS <1. .1377
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ACI06083.1"
FT /translation="STVVDNTLMVILAMNYALAKLSITSEEAHDLIRYFANGDDLLIAV
FT EPKRGSSILDSLAQSFEDLGLNYDFTQRTFDKSQLSFMSHHAIWDGEMYIPKIKRERIV
FT SILEWDRSTQPEHRIEAVCAATIEAWGYPELLHEIRKFYAFLVTQEPYNALHAQGRTRY
FT ISEQALITLYRDRKVELKDIEPYLQKLADMSLDYSDDEVCHQAETVDAGGTSKQANPVV
FT AKPDKDVNVGTFTIPRVKPLNDKMMLPRVRGKTILNLQHLIQYSPEQVDISNTRATRTQ
FT FNNWYDKVKENYAVTDEQMSVILNGLMVWCIENGTSPNLNGNWTMMDRDEQVEYSLKPV
FT LENAQPTFRQIMAHFSNAAEAYIEKRNSEQRYMPRYGSQRNLNDYSLARYAFDFYEITA
FT RTPNRAREAHIQMKAAALRNTKTKLFGLDGNVGTEEEDTERHTATDVRRDMHSLLGVSM
FT "
FT mat_peptide <1. .615
FT /product="nuclear inclusion b protein"
FT /note="NIb; replicase"
FT mat_peptide 616. .1374
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 1378. .1647
XX
SQ Sequence 1647 BP; 521 A; 313 C; 371 G; 442 T; 0 other;
fj159372 Length: 1647 28-SEP-2008 Type: N Check: 4704 ..
1 tcaacagttg tggacaacac tctaatggta attctagcca tgaattatgc
51 acttgcgaaa ttatctataa cgtctgagga agcacacgac ctcattcgtt
101 attttgcaaa tggtgatgat ttactcattg cagtggaacc aaaacgtggt
151 tcatccatct tagattctct cgcgcaatca ttcgaagact taggtcttaa
201 ttatgatttc actcagcgca cgtttgataa atcccagttg agtttcatgt
251 cacatcacgc tatatgggat ggagagatgt atattccgaa aattaagcgg
301 gaaagaatcg tttcaattct agaatgggat cgaagtacac aaccggaaca
351 tcgaattgaa gcagtctgtg cagcaacgat agaagcttgg ggctatccag
401 aacttctcca tgaaatcaga aagttttatg ctttccttgt cactcaagaa
451 ccatataatg cacttcacgc ccaaggcaga actcggtata tatccgaaca
501 agcgctaata acattatatc gtgacaggaa agtggagctc aaggacattg
551 aaccttactt gcagaagcta gcagacatga gtctcgatta ctcggatgat
601 gaagtttgcc accaagctga aacggtcgat gcaggcggta cgagcaaaca
651 agcaaatcct gttgtggcga aaccagataa agacgtcaac gttgggacgt
701 ttacaattcc tcgagtgaaa ccgcttaatg acaagatgat gcttccaaga
751 gtgcgaggga aaacaattct caatttgcaa caccttatcc agtacagccc
801 tgaacaagtt gacatatcaa acacacgggc cactcgcaca caattcaaca
851 actggtatga taaggtgaag gagaattatg cagtaacaga tgagcaaatg
901 tcggttattt tgaatggtct aatggtttgg tgcattgaaa atggtacttc
951 accaaatctg aatggaaatt ggactatgat ggacagagat gaacaggttg
1001 agtattcact caaaccagtt cttgagaatg cgcaaccgac gtttcgacaa
1051 attatggcgc atttttctaa cgcagccgaa gcgtatattg aaaaacgaaa
1101 ttcggagcaa aggtacatgc ctaggtacgg cagtcaacga aatctgaacg
1151 actacagctt agcccgctat gcatttgatt tctatgaaat cacagcacga
1201 accccgaata gggctcgtga agcacatata caaatgaagg cggcagctct
1251 tcgaaacacc aaaacgaagt tgtttggttt ggatgggaat gtgggtaccg
1301 aagaagagga cacggaacgg cacacggcga ctgatgttcg tcgtgatatg
1351 cattcactgc taggtgttag catgtgattt agtgaaggtg gaagtaataa
1401 tataaataac aatatttcta ctccgttagc atccttttct tttgaattat
1451 acgtagttat cattttattt ggtgatcaat gcagccatga gttgcattga
1501 gtgacaaatg gagtgagtac tagtgtgtga tttcgagcat attagcacta
1551 tattgtgatc tttaaggttg gtgacgaatg tagtttaaga ttgcattcgg
1601 tgacagactt agagaatatc ataatatttt actagtgtgt aagagac