Sequence of DPV Ornithogalum mosaic virus
Ornithogalum mosaic virus isolate LQD2 polyprotein gene, partial cds.
ACC No: FJ159373
Dated: 2008-09-28 | Length: 1643 | CRC: 82083943
ID FJ159373; SV 1; linear; genomic RNA; STD; VRL; 1643 BP.
XX
AC FJ159373;
XX
DT 28-SEP-2008 (Rel. 97, Created)
DT 28-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE Ornithogalum mosaic virus isolate LQD2 polyprotein gene, partial cds.
XX
KW .
XX
OS Ornithogalum mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1643
RA Hammond J., Reinsel M.D., Vaira A.M.;
RT "Potyvirus Diversity in Lachenalia and Ornithogalum";
RL Unpublished.
XX
RN [2]
RP 1-1643
RA Hammond J., Reinsel M.D.;
RT ;
RL Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL Floral and Nursery Plants Research Unit, National Arboretum, US Department
RL of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD
RL 20705, USA
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FH Key Location/Qualifiers
FH
FT source 1. .1643
FT /organism="Ornithogalum mosaic virus"
FT /specific_host="Lachenalia aloides"
FT /isolate="LQD2"
FT /mol_type="genomic RNA"
FT /country="USA:Maryland, Beltsville"
FT /collection_date="2006"
FT /db_xref="taxon:12204"
FT CDS <1. .1377
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="ACI06084.1"
FT /translation="STVVDNTLMVVLAMNYSLAKLNIPFEAMDSRIRYFANGDDLIIAV
FT NPVGGEQILDSLQDSFSELGLNYDFNDRTYNKEQLSFMSHQALWDGDMYIPKIKAERVV
FT SILEWDRSVLPEHRIEAVCAAMIEAWGFPNLLQEIRKFYAYMVTQEPYSALHAQGQTRY
FT ISEQALITLYKDRKVILNDIEPYLQKLAEISLESGEEEVWHQAESMDAGGSSRQQDSVA
FT RQQDKDVNVGTFSVARVKQISDKMMLPRVRGKAVLNLQHLIQYSPEQTEISNTRATRTQ
FT FDHWYDKVKESYGVTDDQMSVILNGLMVWCIENGTSPNLHGNWTMMDGEEQVEYPLQPI
FT LENAQPTFRQIMAHFSNAAEAYIEKRNSEQRYMPRYGNQRNLNDYSLARYAFDFYEMTS
FT RTPNRARETHIQMKAAALRNTKTKLFGLDGKVGTEEEDTERHTASDVRRDMHSLLGVSM
FT "
FT mat_peptide <1. .615
FT /product="nuclear inclusion b protein"
FT /note="NIb; replicase"
FT mat_peptide 616. .1374
FT /product="coat protein"
FT /note="CP"
FT 3'UTR 1378. .1643
XX
SQ Sequence 1643 BP; 496 A; 295 C; 410 G; 442 T; 0 other;
fj159373 Length: 1643 28-SEP-2008 Type: N Check: 3705 ..
1 tcgactgttg ttgataatac actgatggtc gttttagcaa tgaactattc
51 tctcgcaaaa ttgaacatcc cattcgaagc gatggatagt aggatacgtt
101 actttgccaa tggcgacgat ttaataattg cagtcaatcc ggttggagga
151 gaacaaattt tggattcctt gcaagattca ttttcggagt tagggctgaa
201 ctacgatttc aacgatcgta cgtacaataa ggaacaattg agtttcatgt
251 cccatcaagc tttgtgggat ggagacatgt acatacccaa aataaaggca
301 gagcgggtgg tgtcgattct ggagtgggat agaagtgtac ttcctgagca
351 tcgaattgaa gcagtttgcg ccgctatgat tgaagcatgg ggcttcccta
401 acttgctgca agagatcagg aagttttacg catatatggt gacacaggaa
451 ccatatagtg cattgcatgc acaaggacaa acaagataca tttcagagca
501 agccctgata acactttaca aggaccgaaa agtgatactc aatgatattg
551 aaccttatct tcagaaattg gcggaaatat cattggaatc gggtgaggaa
601 gaagtttggc atcaggcaga atccatggat gctggcggct ctagccgaca
651 acaggatagc gttgcacgac aacaagacaa ggacgttaat gttggaacgt
701 tttctgtggc acgagtgaag caaattagtg acaagatgat gctaccaaga
751 gtgcgaggaa aggcagttct caatctgcag caccttattc agtacagccc
801 tgagcaaacg gagatttcga acacaagggc tactcgcaca cagtttgatc
851 actggtacga taaggtgaaa gaaagttatg gagtaactga cgatcaaatg
901 tcagttatat tgaatggctt gatggtttgg tgtattgaaa atggcacatc
951 accgaactta catggaaatt ggactatgat ggatggggag gaacaggttg
1001 agtatccatt gcagcccata cttgagaatg cgcagccaac ttttcgacaa
1051 attatggcgc atttctccaa cgcagccgag gcgtatattg agaaaagaaa
1101 ctcggaacag aggtacatgc cgaggtacgg caaccaacga aatctgaacg
1151 actacagttt ggcccgctat gcatttgatt tttatgaaat gacatctcga
1201 acgcccaaca gggccagaga gacacatatt caaatgaaag cggcagctct
1251 tcgaaacacc aaaacgaagt tgtttggttt ggatgggaaa gtgggtaccg
1301 aggaagagga cacggaacgg cacacggcaa gcgatgttcg tcgtgacatg
1351 cattcattac tgggtgttag tatgtgattt agtgaaggtg gattagttga
1401 tattatttga tctactccgt tagcatcctt tcctttgaat tatgcgtagt
1451 acttgtttaa atcagtgact gactcagtca agtattgcgt caggtgatgg
1501 tttgagcaaa ttctagtgtg tgatttcgaa cttattattg ttgtattgtg
1551 attgttagac agggtgactg ttttagtttg tcaaattaca acaggtgacc
1601 tgtttagcaa atatctataa tatttcaata gtgtgctaga gac