Sequence of DPV Spiranthes mosaic virus 3

Spiranthes mosaic virus 3 isolate BW1 polyprotein gene, partial cds.

ACC No: FJ159385

Dated: 2008-09-28 | Length: 1547 | CRC: 1940918411

                
ID   FJ159385; SV 1; linear; genomic RNA; STD; VRL; 1547 BP.
XX
AC   FJ159385;
XX
DT   28-SEP-2008 (Rel. 97, Created)
DT   28-SEP-2008 (Rel. 97, Last updated, Version 1)
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DE   Spiranthes mosaic virus 3 isolate BW1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Spiranthes mosaic virus 3
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1547
RA   Hammond J., Reinsel M.D.;
RT   ;
RL   Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL   Floral and Nursery Plants Research Unit, National Arboretum, US Department
RL   of Agriculture, 10300 Baltimore Avenue, Building 010A, Beltsville, MD
RL   20705, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1547
FT                   /organism="Spiranthes mosaic virus 3"
FT                   /specific_host="Phlox stolonifera cultivar Bruces White"
FT                   /isolate="BW1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Maryland"
FT                   /collection_date="2004"
FT                   /db_xref="taxon:290031"
FT   CDS             <1. .1425
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ACI06098.1"
FT                   /translation="STVVDNTLMVILAMYYTLMSCEVPISECVFFVNGDDLLIAINPFY
FT                   ADRLSQFSGYFRQLGLKYDFSNTTSDKTQLWFMSHRALHHDGMLIPKLEPERIVSILEW
FT                   DRSSEPTHRLEAICAAMIESWGYTELTHEIRKFYAWVLEQAPYKQLAQAGCAPYLAETA
FT                   LRHLYTGHRASEEELLRYVTCFGSEFAEREDESITLQSGTPGESQINAGDQKDKKDKKI
FT                   SDSATPQEKQAIESRKDRDVNVGTSGTFSVPRVQMTAKKMNLPKSKQKKIVNLDFLLAY
FT                   KPEQSDISNKRASHAQFTAWVTAVQEAYDVSDEQLQILMDGLMVWCIENGTSHKLTGNW
FT                   TMMDGADQVEYPLEPVIANAKPTLRQIMAHFSDLAEAYIKMRNSDRSYMPRYGLQRNLT
FT                   DMSLSQYAFDFYEVTSRTPIRAREALAQMKAAAVGNTTNRMFGLDGNLTNTEEDTERHT
FT                   AQDVNRHMHTLLGVRQ"
FT   mat_peptide     <1. .600
FT                   /product="nuclear inclusion b protein"
FT                   /note="NIb; replicase"
FT   mat_peptide     601. .1422
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           1426. .1547
XX
SQ   Sequence 1547 BP; 459 A; 332 C; 367 G; 389 T; 0 other;

fj159385 Length: 1547  28-SEP-2008  Type: N  Check: 4608  ..

       1  tccactgttg tcgacaacac actgatggtg attctcgcca tgtattacac
      51  ccttatgtca tgtgaagtcc caatctctga gtgtgtattc tttgtgaatg
     101  gggatgattt gctgatagca atcaatccat tctatgctga tcggctatct
     151  cagttttctg ggtactttcg ccaacttggt ctgaaatatg acttcagcaa
     201  cacgacaagt gacaagaccc aactgtggtt tatgtcacat cgagcgttgc
     251  atcacgatgg gatgctcatt ccaaagctcg aaccggagag aattgtgtct
     301  atactcgagt gggataggtc gagcgagccg acgcatcgtc tcgaagccat
     351  atgtgctgcc atgattgaat catggggcta tacggagtta actcatgaaa
     401  ttcgcaagtt ctatgcgtgg gttctagaac aggccccgta taagcaactt
     451  gcccaagctg gttgtgctcc atatttagcc gagacagcct taaggcacct
     501  atacacagga cacagggcta gtgaggaaga actactcagg tatgtcacat
     551  gctttggttc agaatttgct gagcgtgagg atgagtcgat aacgctccaa
     601  agtggaacgc caggcgaatc acaaattaac gctggggatc aaaaagataa
     651  gaaagacaaa aagatcagtg actcagccac accccaggag aagcaagcca
     701  ttgagtcgag aaaagacagg gatgtcaatg ttggcactag cggtacgttt
     751  agtgttccga gggtgcaaat gacagcaaag aaaatgaact tgccaaagtc
     801  gaaacagaaa aagatagtca atcttgactt tttgctggct tacaaacctg
     851  aacaaagtga tatctctaac aagagagcta gtcatgcaca attcaccgca
     901  tgggtcacag cagttcaaga agcatatgac gtgtcagacg agcagttgca
     951  aatactcatg gatggcttga tggtttggtg tattgaaaac ggaacttcac
    1001  acaaactcac aggcaattgg actatgatgg atggtgcgga ccaagtcgaa
    1051  tatccgctag agcctgtcat tgctaatgcc aaaccaacat tgcggcaaat
    1101  aatggcacat tttagcgatc tagcggaagc ttatatcaag atgagaaata
    1151  gcgatcgcag ttatatgcct cgctatggcc ttcaaagaaa cctgactgat
    1201  atgagcttaa gtcagtacgc gtttgatttt tacgaggtta catcacgtac
    1251  gccaatacgt gctcgtgaag cgctagcgca aatgaaagca gcagctgttg
    1301  gaaacacaac aaacagaatg tttggccttg atggcaatct gaccaacact
    1351  gaagaggata cggaacgaca tacggcacaa gatgtcaatc gccacatgca
    1401  caccttacta ggtgtgcgtc agtgattaac acgtctatcc ttgctttcgc
    1451  agaagcataa ttaatgttat attcatgttt ctgtctctct acctacactt
    1501  ggtgccatag tgatgttcac atcgaggttt tcaatggttt gtagagc