Sequence of DPV Groundnut bud necrosis virus

Peanut bud necrosis virus isolate PBNV-Ch-Gur nucleocapsid (N) gene, complete cds.

ACC No: FJ168032

Dated: 2011-02-27 | Length: 831 | CRC: 2107860870

                
ID   FJ168032; SV 1; linear; genomic RNA; STD; VRL; 831 BP.
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AC   FJ168032;
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DT   03-MAR-2009 (Rel. 100, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
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DE   Peanut bud necrosis virus isolate PBNV-Ch-Gur nucleocapsid (N) gene,
DE   complete cds.
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KW   .
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OS   Peanut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-831
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
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RN   [2]
RP   1-831
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.;
RT   ;
RL   Submitted (28-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /organism="Peanut bud necrosis virus"
FT                   /host="Capsicum annuum"
FT                   /isolate="PBNV-Ch-Gur"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-F,
FT                   rev_name: MhMVL-R"
FT                   /db_xref="taxon:40687"
FT   gene            1. .831
FT                   /gene="N"
FT   CDS             1. .831
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:Q8JQ98"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JQ98"
FT                   /protein_id="ACN38324.1"
FT                   /translation="MSNVKQLTEKKIKELLAGGSADVEIETEDSTPGFSFKAFYDANKT
FT                   LEITFTNCLNILKCRKQIFAACKSGKYVFCGKTIVATNTDVGPDDWTFKRTEAFIRTKM
FT                   ASMVEKSKNDAAKQEMYNKIMELPLVAAYGLNVPASFDTCALRMMLCIGGPLPLLSSMT
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKNELEEMFKSAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSASLSMDDYGEHSKKKSSKAGPSLEL"
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SQ   Sequence 831 BP; 272 A; 146 C; 176 G; 237 T; 0 other;

fj168032 Length: 831  27-FEB-2011  Type: N  Check: 2948  ..

       1  atgtctaacg ttaagcaact caccgagaag aaaatcaaag aacttttggc
      51  tggtggctct gcagatgttg aaattgaaac agaagattcc actcccggat
     101  ttagctttaa agctttctat gacgctaaca aaactcttga aataactttc
     151  acaaactgtt tgaatatctt gaagtgcagg aagcagatct ttgctgcttg
     201  caaaagtggt aagtatgttt tttgtggtaa aactattgtt gccacaaata
     251  ctgacgtagg gccagatgac tggaccttca aaaggacaga agctttcatc
     301  aggaccaaaa tggctagtat ggttgaaaag agcaagaatg atgctgctaa
     351  gcaggagatg tacaataaaa taatggaatt accattggtg gcagcttatg
     401  gattaaatgt ccctgcatct tttgatacat gtgctttaag gatgatgctc
     451  tgcattggag gtcctctgcc tctcttgtct agcatgactg gtctggcacc
     501  aattatattc cccctggctt attatcaaaa tgtgaagaaa gagaagttag
     551  ggattaaaaa cttttctact tatgaacagg tttgcaaagt agccaaagta
     601  ctttctgctt cacagattga atttaaaaat gaactagagg aaatgtttaa
     651  atcagctgta aagctattga gtgagagcaa ccctggaaca gccagctcta
     701  tctcactcaa gaaatatgat gaacaagtca aatatatgga caaagctttc
     751  agtgccagtc tctcaatgga tgattatggt gaacattcta agaaaaagag
     801  ttcaaaggct ggtccttccc tggaattgta a