Sequence of DPV Groundnut bud necrosis virus

Peanut bud necrosis virus isolate PBNV-Ch-Var nucleocapsid (N) gene, complete cds.

ACC No: FJ168033

Dated: 2011-02-27 | Length: 831 | CRC: -404628842

                
ID   FJ168033; SV 1; linear; genomic RNA; STD; VRL; 831 BP.
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AC   FJ168033;
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DT   03-MAR-2009 (Rel. 100, Created)
DT   27-FEB-2011 (Rel. 108, Last updated, Version 2)
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DE   Peanut bud necrosis virus isolate PBNV-Ch-Var nucleocapsid (N) gene,
DE   complete cds.
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KW   .
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OS   Peanut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-831
RX   PUBMED; 21299415.
RA   Kunkalikar S.R., Poojari S., Arun B.M., Rajagopalan P.A., Chen T.C.,
RA   Yeh S.D., Naidu R.A., Zehr U.B., Ravi K.S.;
RT   "Importance and genetic diversity of vegetable-infecting tospoviruses in
RT   India";
RL   Phytopathology 101(3):367-376(2011).
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RN   [2]
RP   1-831
RA   Ravi K.S., Kunkalikar S.R., Sudarsana P., Rajagopalan P.A., Zehr U.B.;
RT   ;
RL   Submitted (28-AUG-2008) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Mahyco Life Science Research Center, Dawalwadi, Jalna,
RL   Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .831
FT                   /organism="Peanut bud necrosis virus"
FT                   /host="Capsicum annuum"
FT                   /isolate="PBNV-Ch-Var"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-F,
FT                   rev_name: MhMVL-R"
FT                   /db_xref="taxon:40687"
FT   gene            1. .831
FT                   /gene="N"
FT   CDS             1. .831
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid"
FT                   /db_xref="GOA:C0JAQ2"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:C0JAQ2"
FT                   /protein_id="ACN38325.1"
FT                   /translation="MSNVKQLTEKKIKELLAGGSADVEIETEDSTPGFSFKAFYDANKT
FT                   LEITFTNCLNILKCRKQIFAACKSGKYVFCGKTIVATNTDVGPDDWTFKRTEAFIRTKM
FT                   ASMVEKSKNDAAKQEMYNKIMELPLVAAYGLNVPASFDTCALRMMLCIGGPLPLLSSMT
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASRIEFKNELEEMFKSAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSASLSVDDYGEHSKKKSSKAGPSLEL"
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SQ   Sequence 831 BP; 272 A; 145 C; 176 G; 238 T; 0 other;

fj168033 Length: 831  27-FEB-2011  Type: N  Check: 3428  ..

       1  atgtctaacg ttaagcaact caccgagaag aaaatcaaag aacttctggc
      51  tggtggctct gcagatgttg aaattgaaac agaagattcc actcccggat
     101  ttagctttaa agctttctat gacgctaaca aaactcttga aataactttt
     151  acaaactgtt tgaatatttt gaagtgcagg aagcagatct ttgctgcttg
     201  caaaagtggt aagtatgttt tttgtggtaa aactattgtt gctacaaata
     251  ctgacgtagg gccagatgac tggaccttca aaaggacaga agctttcatc
     301  agaaccaaaa tggctagtat ggttgaaaag agcaagaatg atgctgctaa
     351  gcaagagatg tacaataaaa taatggaatt accattagtg gcagcttatg
     401  gattaaatgt ccctgcatct ttcgatacat gtgctttgag gatgatgctc
     451  tgcattggag gtcctttgcc tctcttgtct agcatgactg gtctggcacc
     501  aatcatattc cctctagctt attatcaaaa tgtgaagaaa gagaaattag
     551  gaattaagaa cttttctact tatgagcagg tttgcaaagt agccaaagta
     601  ctttctgctt cacggattga attcaaaaat gaactagagg aaatgtttaa
     651  atcagctgta aagctattga gtgagagcaa ccctggaaca gccagctcta
     701  tctcactcaa gaaatatgat gaacaagtca aatatatgga caaagctttc
     751  agtgccagtc tctcagtgga tgattatggt gaacattcta agaagaagag
     801  ttcaaaggct ggcccttctc tggaattgta a