Sequence of DPV Carrot mottle mimic virus
Carrot mottle mimic virus isolate California RNA-dependent RNA polymerase, long-distance movement protein, and cell-to-cell movement protein genes, complete cds.
ACC No: FJ188471
Dated: 2008-11-03 | Length: 3655 | CRC: -107448865
ID FJ188471; SV 1; linear; genomic RNA; STD; VRL; 3655 BP.
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AC FJ188471;
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DT 03-NOV-2008 (Rel. 97, Created)
DT 03-NOV-2008 (Rel. 97, Last updated, Version 1)
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DE Carrot mottle mimic virus isolate California RNA-dependent RNA polymerase,
DE long-distance movement protein, and cell-to-cell movement protein genes,
DE complete cds.
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KW .
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OS Carrot mottle mimic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
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RN [1]
RP 1-3655
RA Menzel W., Maiss E., Vetten H.J.;
RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus
RT from Germany";
RL Unpublished.
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RN [2]
RP 1-3655
RA Menzel W., Maiss E., Vetten H.J.;
RT ;
RL Submitted (05-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet
RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
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FH Key Location/Qualifiers
FH
FT source 1. .3655
FT /organism="Carrot mottle mimic virus"
FT /host="Daucus carota"
FT /isolate="California"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collected_by="B.W. Falk"
FT /db_xref="taxon:47736"
FT CDS join(1. .939,939. .2648)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="ACJ03572.1"
FT /translation="MDHITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLVTQARMTTAH
FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKVSSPLTRSCGGTMVNADGGL
FT VDNPLPTDRDEMPAASMQMNAPSGGVAVASVNSEVARWVFALPRELDDPVMETPVNPSA
FT PTEADRELTRVLNNTVAVGDIASALSTIQEEPQHEAIAVPGTAVGVVHQEDPAPVEGSP
FT STRDAALEGDAGHSAHAGDDTDASAEMPTTVEAAGPLMEEGPSMAHLTSYTVAMELRSR
FT FGLRPASPANIELGARVAREILKTAGARRQDNLLSSPAGSQVFPDADTPGCGVQHTHPG
FT FLLGDVIARDGVCTKTVPIILSPSLHIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSL
FT VNLVRGINERVFYTDNRGSLPVRPTPGSFDRLTVDIKHFKINAWSMEDVVNSYTGRQRA
FT RYEQAMLSIMERPLERRDARVSTFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIK
FT PLEPMLYKALGRLYKQPCVAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVE
FT ALKFTHSVYKRFNSSKEFVDLLNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNC
FT VLMVLMTRNLCLDLSIPHELMDNGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAP
FT VYQFEKVEFCQTQPVFDGTQWRMVRQIPSIAKDLCSVIDWEQLESWWHAIGNCGQSLAG
FT GLPVFGSFYRWLCRIGKDNTKVTEHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFG
FT LSIPMQIALEGIYDNLKKPGKVVPGACERRGFNDWFIPDAQCLNPSRSAVHTDEVEVEV
FT DFLYPPPVSAC"
FT CDS 2770. .3567
FT /codon_start=1
FT /product="long-distance movement protein"
FT /protein_id="ACJ03573.1"
FT /translation="MGIVMNLQIQPIGDGNNSSRNSRRPNQPSPRRRDSRQASGSWLWC
FT PNTSPRQQYPYMYATIPPRAPTNGPGFLHPEMAHEAQWGPPVYREASGGFPATRARRNR
FT GRGSAVAPRYGPVGPGTGRPQSVTEPQRGTAAGRFLSELLYSFERFGRECPAMFLPSDP
FT ASRHPPEDWLQRLLPALNVEPSHRREGPTLPSNRAGVCAHSKALDKELVADTSTTAAVS
FT ERRADEPTRKEPEGQPITEAPSTGLCSKPHTRGEQCSDPTLHF"
FT CDS 2810. .3598
FT /codon_start=1
FT /product="cell-to-cell movement protein"
FT /protein_id="ACJ03574.1"
FT /translation="MAIIQAGTREDLINLLHGAGIQDKLRDLGFGVLTPARGSNTLTCT
FT PLYPPEHQRTVRDFFTRKWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS
FT DLEPVGRKVSLSLSGGPRLVAFYPNYSIPLSDSAESAPRCFSLVTQLQGIRLKTGSSAF
FT SLLSMWNPVIGEKAQHYQATEPECVPIVRHSIRSSLQTLALQRQYLNAALTNPLGRSQR
FT GSQSLRHPPLDYALSPTREASSVQIPPSTSSATKAHQYLE"
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SQ Sequence 3655 BP; 913 A; 938 C; 980 G; 824 T; 0 other;
fj188471 Length: 3655 03-NOV-2008 Type: N Check: 8113 ..
1 atggatcaca taactaagtt cttgcgaatg gatttctcgc ccaaagatgg
51 cgtcctaacc agacgccaat gtgctgaacg cttcgatgac acctggggac
101 tcctagttac ccaggcgaga atgaccacag cgcacacagc ggatatgtgt
151 gcatggtacg aggggtcccg ggagaccaac cagtaccttc ccctagagca
201 gttcgtggac tccagggatg ccagcaagga agctgaagac aaggtggaca
251 aagtgtcctc tcccctcacc cgaagctgtg gtggtaccat ggtaaatgct
301 gatgggggcc ttgtggataa ccctctccca accgataggg atgagatgcc
351 tgcagctagc atgcagatga acgccccatc gggtggcgtt gccgtggcct
401 ctgttaatag tgaggtcgcg cgttgggtat ttgctctacc ccgtgaactg
451 gatgaccctg ttatggagac tccagtaaac ccgtctgctc ctacagaggc
501 agatcgagag ttgacgcggg tattgaataa taccgttgct gtcggggaca
551 ttgcatcggc actgtccacc atccaggaag agccacaaca cgaggcaatt
601 gctgtacctg ggacagccgt aggagtggtc caccaagagg acccagcccc
651 agtagagggc tcccctagta caagggatgc cgccctggaa ggcgatgcgg
701 gccactcagc ccatgccggt gatgataccg atgcctctgc ggagatgccc
751 acgaccgtgg aagcagcagg gcccctaatg gaagaggggc catccatggc
801 tcacttaacg agctacacag tagccatgga actcaggtct agattcggcc
851 tgcgaccggc cagccccgct aatatagaat taggggcgcg agttgctagg
901 gagatcttga agaccgctgg ggctagacgc caagataact attatctagc
951 ccagcaggca gtcaagtttt tcctgacgcc gacactcctg gatgtggtgt
1001 acagcacacc catccgggat ttttattagg ggacgtcatt gcgagggatg
1051 gggtgtgtac taaaacagta cctatcatat tgagcccctc cttgcacatc
1101 aggccgtccg cacgtccccg gcctgttaaa agggtatctt accagattga
1151 cgcggtaagg ccctctgctg attttggagt tcacaacaac tccttggtga
1201 atctcgtgag gggaataaat gagcgagtgt tctacactga taatcgtggc
1251 tctcttcctg ttagacccac cccaggtagc tttgaccgtt tgaccgtcga
1301 cattaagcac ttcaaaatta atgcttggtc catggaagac gttgtcaaca
1351 gttataccgg gagacaaagg gcaaggtatg agcaagcgat gttatctatc
1401 atggaacgac cgctagaacg gagggatgct agggtgtcta catttataaa
1451 agcggagaag atcaactttt ctgccaagcc agacccagct ccccgagtca
1501 tccaaccccg agatcccagg ttcaatgtgg tattcgcaaa atatattaaa
1551 ccacttgagc caatgttgta caaagctctg ggcaggctgt ataaacaacc
1601 gtgtgtcgcc aagggattta atgcctttca aactggtgag ataattagga
1651 agaagtggga ttcattccga aatccagttt gtgtagggct agacgctagc
1701 cgatttgacc agcatgtgtc agttgaagcc ttaaagttca cacattctgt
1751 gtacaagcgg ttcaactcct ctaaggagtt tgtggacctg cttaaccaga
1801 tgtacgttaa tcgtggactt ggcacttgca aagatggtct tgtcaagtat
1851 aaggtgaagg gttgcagaat gagcggtgat atggataccg ccctgggcaa
1901 ttgtgttctc atggtcttaa tgacacgcaa tttgtgttta gacctgtcca
1951 tcccccatga gttgatggac aatggtgacg attgcatcgt catttttgag
2001 aaggagcact tgcaaaggtt caatgcagct gttaagccat acttcgcagc
2051 gttgggcttc accatgaaag tagaagcccc tgtttaccaa tttgagaaag
2101 tcgaattttg ccaaacccag ccagtatttg atggcaccca atggagaatg
2151 gttaggcaaa ttcctagtat cgctaaggac ctatgtagcg taatcgattg
2201 ggaacagcta gaatcttggt ggcacgcgat aggaaactgc ggccagagct
2251 tggcgggggg attgccagtg tttggcagtt tttaccgttg gttgtgtaga
2301 atcgggaaag ataatactaa agtgaccgag catccactgt acaaatgcgg
2351 catggtcaac ctttcccgtg gaatggatgc gcgagataag cccatcacaa
2401 cagagggacg ccttagcttc agcctagcgt ttggattgtc cattccaatg
2451 caaatagcat tggagggtat atatgacaat cttaagaaac caggcaaggt
2501 agtcccgggg gcttgtgaaa ggcgaggatt taatgactgg tttataccag
2551 atgctcagtg ccttaaccca tccagatctg cagtccacac cgacgaggtt
2601 gaggtggagg ttgatttcct ctaccctcct cccgtttccg cctgttgagg
2651 cagtcacgta gctagtacca ggttgcaata ctagagcgtt agtcctgggg
2701 cgtccctttg gtggagggcc gtcaaaccta gataactcag tcacctaatc
2751 ctccactagg ctctggagga tgggcatcgt catgaactta cagatacaac
2801 caataggcga tggcaataat tcaagcagga actcgagaag acctaatcaa
2851 ccttctccac ggcgcaggga ttcaagacaa gcttcgggat cttggctttg
2901 gtgtcctaac accagcccga ggcagcaata cccttacatg tacgccacta
2951 taccccccag agcaccaacg aacggtccgg gatttcttca cccggaaatg
3001 gcgcacgaag cgcagtgggg gcctcctgtt tatagagaag ctagtggtgg
3051 ctttcctgcc acacgtgccc gacggaaccg cgggcgaggt agtgctgtgg
3101 ctccacgata cggccctgtc ggacctggaa ccggtaggcc gcaaagtgtc
3151 actgagcctc agcgggggac cgcggctggt cgctttctat ccgaattact
3201 ctattccttt gagcgattcg gcagagagtg ccccgcgatg tttctcccta
3251 gtgacccagc ttcaaggcat ccgcctgaag actggctcca gcgccttctc
3301 cctgctctca atgtggaacc cagtcatagg agagaaggcc caacactacc
3351 aagcaacaga gccggagtgt gtgcccatag taaggcactc gataaggagc
3401 tcgttgcaga cactagcact acagcggcag tatctgaacg ccgcgctgac
3451 gaacccacta ggaaggagcc agaggggcag ccaatcactg aggcaccctc
3501 cactggacta tgctctaagc cccacacgag aggcgagcag tgttcagatc
3551 ccaccctcca cttctagtgc caccaaagcc caccaatacc ttgagtaagt
3601 attggtgcgt atctgtactc acggcacccg ggttgtagat agtttccccc
3651 gcgta