Sequence of DPV Carrot mottle mimic virus
Carrot mottle mimic virus isolate Bingenheim RNA-dependent RNA polymerase, long-distance movement protein, and cell-to-cell movement protein genes, complete cds.
ACC No: FJ188472
Dated: 2008-11-03 | Length: 3957 | CRC: 266757376
ID FJ188472; SV 1; linear; genomic RNA; STD; VRL; 3957 BP.
XX
AC FJ188472;
XX
DT 03-NOV-2008 (Rel. 97, Created)
DT 03-NOV-2008 (Rel. 97, Last updated, Version 1)
XX
DE Carrot mottle mimic virus isolate Bingenheim RNA-dependent RNA polymerase,
DE long-distance movement protein, and cell-to-cell movement protein genes,
DE complete cds.
XX
KW .
XX
OS Carrot mottle mimic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-3957
RA Menzel W., Maiss E., Vetten H.J.;
RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus
RT from Germany";
RL Unpublished.
XX
RN [2]
RP 1-3957
RA Menzel W., Maiss E., Vetten H.J.;
RT ;
RL Submitted (05-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet
RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .3957
FT /organism="Carrot mottle mimic virus"
FT /host="Daucus carota"
FT /isolate="Bingenheim"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /collected_by="Roswitha Ulrich"
FT /collection_date="2003"
FT /db_xref="taxon:47736"
FT CDS join(1. .939,939. .2642)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="ACJ03575.1"
FT /translation="MDPITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLVTQARMTTAH
FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKKSTAPIPGAGGPAPNADGAL
FT VVPPPVDGVEMPADSMQMSAPTGGAVVQPDNIEVAHWVYSLPSELEPLDEDVPVDQSAS
FT TEAELELVRVLNNAIAVGDERVPTLAPIQEEPENEASAAPETAVGTAHQEGQTPNGDAP
FT STGNAAVSSDAGNSTHASGEADASTEMPVTTEAAGPLMEEGPSMAHLTSYAVAMELRSR
FT FGLRPASPANIELGARVAKEILKTAGARRQDNLLSGPAGSQVLPDANTPGCGVQHTHPG
FT FLLGDVIARDGVCTKTVPIVLSPSLQIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSL
FT VNLVRGINERVFYTDNRGSLPVRPTPGAFDELTVDLKSFKIQAWSMEDVVNSYTGRQRA
FT RYEQAMLSVLERPLERRDARVATFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIK
FT PLEPMLYKALGRLYKQPCVAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVE
FT ALKFTHSVYKRFNSSKEFVELLDQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNC
FT VLMVLMTRNLCLDLSIPHELMDNGDDCIVMFEKEHLQKFNAAVKPYFAALGFTMKVEAP
FT VYQFEKVEFCQTQPVFDGTQWRMVRQIPSIAKDLCSVINWEQLESWWHAIGNCGQSLAG
FT GMPVLGSFYRWLCRIGKDNTKVTAHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFG
FT ISIPMQLALEGIYDGLQKPGKVVPGACERRGFNDWFTPDVQCLNPSRSAVHTDEVVEEV
FT DLLFPPPVY"
FT CDS 2773. .3570
FT /codon_start=1
FT /product="long-distance movement protein"
FT /protein_id="ACJ03576.1"
FT /translation="MGIVMNLQIQPINDGNNTSRNSRRTNQPSPRRGNTRQASGSWLWC
FT PNTSPGLQYPNMYAALPPRTSTNSPGFLYPEMAHEAQWGPPVYREASGGILATRPGRNR
FT GRGSIMAPRHGPIGPGTGRAKGVSEPQRGTAAGRFLSELLHSFERFGRECPAMFLPSDP
FT DSRHPPEDWLQRLLPALNVESNHRREGAALPSNRAGVCAHCKALDKELVANTSTPAAIS
FT ERRADEPARKESEGKPIHEAPSTGLCSKSHTSGEHCSDPTLHF"
FT CDS 2813. .3601
FT /codon_start=1
FT /product="cell-to-cell movement protein"
FT /protein_id="ACJ03577.1"
FT /translation="MAIIQAGTREELINLLHGAGIQDKLRDLGFGVLTPARGCNTLTCT
FT PLYPPEHQRTVRDFFTRRWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS
FT DLEPVGQKVSLSLSGGPRLVAFYPNYSIPLSDSAENAPRCFSLVTQIQGIRLKTGSSAF
FT SLLSMWNPTIGERAQHYQATEPECVPIVRHSIRSSLQTLVLQRQYLNAALTNPLGRSQR
FT VSQSMRHPPLDYALSPTRVASTVQIPPSTSSDTKTHRSLE"
XX
SQ Sequence 3957 BP; 981 A; 1020 C; 1070 G; 886 T; 0 other;
fj188472 Length: 3957 03-NOV-2008 Type: N Check: 4432 ..
1 atggatccca taactaagtt cttgcgaatg gacttctcgc ccaaagatgg
51 cgtcctaacc agacgccaat gtgctgaacg cttcgatgac acctggggac
101 tcctagttac ccaggcgaga atgaccacag cgcacacagc ggatatgtgt
151 gcatggtacg aggggtcccg ggagaccaac cagtaccttc ccctagagca
201 gttcgtggac tccagggatg ccagcaagga agctgaagac aaggtggaca
251 aaaagtccac agcccctatc cccggtgctg gtggtcccgc acccaatgct
301 gatggggctc ttgtagtgcc tccccctgta gacggggttg agatgcctgc
351 agatagcatg cagatgagcg ccccaactgg gggtgctgtg gtgcagcctg
401 acaacattga ggttgcccac tgggtgtatt cactgcccag cgaactggag
451 cctctcgatg aggatgtacc agtagaccag tctgccagta cggaggcaga
501 acttgagttg gtgcgggttt tgaacaacgc cattgctgtc ggggacgaga
551 gagtacccac tcttgcccca attcaggagg agcccgaaaa cgaggcatca
601 gcggcccctg agacagccgt aggaaccgcc caccaagagg gccagacccc
651 caatggggat gctcccagta cagggaatgc cgctgttagt agcgatgcgg
701 gtaactcaac ccatgccagc ggagaagctg atgcctctac ggagatgccc
751 gtgacaacgg aagcagcagg gcccctcatg gaggaggggc catccatggc
801 ccacctaacg agttatgcag tggccatgga actcaggtcc cgatttggcc
851 tgcgaccagc cagtcccgct aatatagaat tgggggcgag agtcgctaag
901 gaaatcttga agaccgctgg ggccagacgc caagataact attatctggc
951 ccagcaggca gtcaagttct tcctgacgcc aacactcctg gatgtggtgt
1001 acagcacacc catccgggat ttttactagg ggacgttatt gcacgggatg
1051 gggtatgcac taaaactgtg cctatcgtat taagcccctc cctgcaaatc
1101 aggccgtccg cacgtccccg gcctgttaaa agggtttctt accagattga
1151 cgcggtaaga ccctctgctg attttggagt tcacaacaac tccttggtga
1201 atctcgtgag aggtataaac gagagggtat tctatactga caaccgtggc
1251 tctctacctg taagacccac cccaggtgct tttgacgaac ttaccgtgga
1301 cctgaagtcg tttaagattc aagcttggtc catggaggat gtcgtcaata
1351 gttacaccgg gagacaaagg gccaggtatg agcaagcgat gttgtcggtc
1401 ctagagagac ccctagaacg gagggatgct agggtggcaa cttttatcaa
1451 agccgagaag attaacttct ccgccaagcc agaccccgct ccccgagtca
1501 ttcaaccccg agatcccagg ttcaatgtgg tattcgcgaa atacataaag
1551 ccacttgaac caatgttgta taaagctctg ggcaggttgt acaaacaacc
1601 atgtgtcgcc aagggattta atgccttcca aactggtgaa ataatcagaa
1651 agaagtggga ttcttttaga aatccagttt gtgttggctt ggacgctagc
1701 cgattcgacc aacatgtatc agtcgaagct ctgaagttca cgcactctgt
1751 ctataagcgg ttcaactcct ccaaagagtt tgtcgagcta ttagatcaga
1801 tgtatgttaa tcgtggactt ggtacatgta aagatggtct agtcaagtat
1851 aaggttaagg gttgcagaat gagcggtgat atggataccg ccttgggcaa
1901 ttgtgttctc atggtcttga tgacacggaa tttgtgtctc gacctgtcca
1951 tcccccatga gttgatggac aacggtgacg attgcatcgt catgtttgag
2001 aaggaacact tgcaaaagtt taatgctgct gttaaacctt acttcgcagc
2051 gttagggttc accatgaagg ttgaggcccc tgtttaccaa tttgagaagg
2101 ttgaattctg ccaaacccag ccagtctttg acggcaccca atggagaatg
2151 gttaggcaga tccctagcat cgctaaagac ctatgcagcg tgatcaattg
2201 ggaacagtta gaatcttggt ggcatgcaat aggaaactgc ggccagagtt
2251 tggcgggagg aatgccagtt ttaggcagtt tctaccgttg gttgtgtaga
2301 attggaaagg acaacactaa agtgaccgcc cacccattgt acaagtgtgg
2351 catggtcaac ctttcccgag gtatggatgc gcgcgacaag cccatcacaa
2401 ctgagggacg ccttagtttt agccttgctt ttggtatatc tatccccatg
2451 caattagcat tggagggcat ttatgacgga ttgcagaagc caggcaaggt
2501 agtcccgggg gcttgtgaaa gacgtggatt taatgactgg tttacaccag
2551 atgttcagtg tcttaaccca tccagatctg ctgtccacac cgacgaggtt
2601 gttgaagagg ttgatctcct cttccctcct cccgtctatt agcctgatga
2651 ggctgtcacg tagctagtac caggttgcaa tactagagcg ttagtcctgg
2701 ggcagcccct atggtggggg gttgtcaaac ctagataact cagtcaccct
2751 accctctact aggctctgga ggatgggcat cgtcatgaac ttacagatac
2801 aaccgatcaa cgatggcaat aatacaagca ggaactcgag aagaactaat
2851 caaccttctc cacggcgcgg gaatacaaga caagcttcgg gatcttggct
2901 ttggtgtcct aacaccagcc cggggctgca ataccctaac atgtacgccg
2951 ctttaccccc cagaacatca acgaacagtc cgggatttct ttacccggag
3001 atggcgcacg aagcgcagtg ggggcctcct gtttatagag aagctagtgg
3051 tggcattctt gccacacgtc ccggacggaa ccgcgggcga ggtagtatta
3101 tggctccacg acacggccct atcggacctg gaaccggtag ggcaaaaggt
3151 gtctctgagc ctcagcgggg gaccgcggct ggtcgctttc tatccgaatt
3201 actccattcc tttgagcgat tcggcagaga atgccccgcg atgtttctcc
3251 ctagtgaccc agattcaagg catccgcctg aagactggct ccagcgcctt
3301 ctccctgctc tcaatgtgga atccaaccat aggagagagg gcgcagcact
3351 accaagcaac agagccggag tgtgtgccca ttgtaaggca ctcgataagg
3401 agctcgttgc aaacactagt actccagcgg caatatctga acgccgcgct
3451 gacgaacccg ctaggaagga gtcagagggt aagccaatcc atgaggcacc
3501 ctccactgga ctatgctcta agtcccacac gagtggcgag cactgttcag
3551 atcccaccct ccacttctag tgacaccaaa acccacagga gccttgagta
3601 agctccgtgg ggtatctgta ctcacggcac ccgggttgta gatagtttcc
3651 cccgcgtagc cagatcccat ggatgtcggt catttgcttg tcctgcccat
3701 ggtttaatag aagggaattg cgcgctcgat aacatcggaa cagaaggtcc
3751 aatcgccctg gaatgggaag gaggcgaggc attgcaatgc acgccgagac
3801 ttcaggggtg tggctggtta ccacacccgg tataacttcg tgttcagtga
3851 atgaattagc gagcaattag gtgcgccatg agcctcgtgg aattggtagc
3901 accccccttg acaatgccgt gagtacagat accccacagg tggcagctgg
3951 attgtct