Sequence of DPV Carrot mottle virus
Carrot mottle virus isolate Weddel, complete genome.
ACC No: FJ188473
Dated: 2008-11-03 | Length: 4193 | CRC: -474230453
ID FJ188473; SV 1; linear; genomic RNA; STD; VRL; 4193 BP. XX AC FJ188473; XX DT 03-NOV-2008 (Rel. 97, Created) DT 03-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Carrot mottle virus isolate Weddel, complete genome. XX KW . XX OS Carrot mottle virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus. XX RN [1] RP 1-4193 RA Menzel W., Maiss E., Vetten H.J.; RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus RT from Germany"; RL Unpublished. XX RN [2] RP 1-4193 RA Menzel W., Maiss E., Vetten H.J.; RT ; RL Submitted (05-SEP-2008) to the EMBL/GenBank/DDBJ databases. RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany XX FH Key Location/Qualifiers FH FT source 1. .4193 FT /organism="Carrot mottle virus" FT /host="Daucus carota" FT /lab_host="Nicotiana benthamiana" FT /isolate="Weddel" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2005" FT /note="acronym: CMoV" FT /db_xref="taxon:68033" FT 5'UTR 1. .22 FT CDS join(23. .982,982. .2634) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /protein_id="ACJ03580.1" FT /translation="MSFLKRILKHLDSQFSPAPGVYNRDVCAELYGAEWGVLITQERMT FT RALSVEHERWYTGRVETDVYIPVAQYVDPRDVEAEPTSQQGNSTGVDNPVNNCSGTVPT FT MPATEVIPVDGLGGRRVGVVPAPEGPIPCEGNVYAILRMADPTADASESSDDEEDTCCP FT AYIHAASNSVAEHSANAVPPPMEGVHPGTSPDGVPSSSSAVGISLAVDVTHVNTVDAST FT EMPTKVEGPDEGVSTSPLQEAGPSMAFVDASSVAMELRARFGYRSKNPANLELGGRVAR FT DILKGCGAVRSENYYLAQLAVQLWFAPTLLDLVLRGPVQGFLLGGVLVREGVCTSVIPK FT VLSPSLTIRPADRPRPVSRVSYQIDAVRPLADYGVHNNSLKNLVRGINERVFYIDNVGT FT KPVQPSGHGFSSIRDDIKAFRVVPWTMEQVVASYSGSQQTRYNTAMQSIYEKPFNRDDA FT RVSTFIKAEKINFTAKPDPAPRVIQPRDPRFNICFAKFIKPLEPMLYKALGRLYKHPCI FT AKGFNAFQTGDIIAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPEFD FT RLLQLMYTNKGRGTAKDGVVKYKVKGCRMSGDMDTALGNCVLMVPMTRELCKRLEIPHE FT LMDNGDDCIVIFDKEHLSKFQRAVKPYFKDLGFSMKVEAPVFKLEQIEFCQTQPVFDGT FT QWRMVRQVNSIAKDLCSVISWEQLLYWWDAIGTCGLALAGGIPVLHSFYKWLCRIGTRG FT SNVDKHPLFKCGMVYLSLGMDSASKRITPEGRLSFASAFGISPAMQVALEGIYDKMGNP FT KGSSVCQVAQSHDFNDWFTPDSRYKELDSGCQDLTTVESTAQVEFPIYGGLYLPHIEA" FT CDS 2806. .3603 FT /codon_start=1 FT /product="long-distance movement protein" FT /protein_id="ACJ03579.1" FT /translation="MTFRIIYDGIEQDSIYNRRTHQPPARRNNSGRTARARAWDYGPSP FT WHQYAYPHSALPPPAPAYFEPLFQRPLAYQEDRGHAVYREARHSVRSARARHVAGTSSD FT LGARHRPPRSGTDRDGPEGVYTLVLGTPAGRFLSELFHSFERLSHECPSVLQSSNPVRG FT GTTGARGERLLSLLHVAASHRGEGAVLPADTTGGCGDTTSQHPIPTPGLEPAHAVPTRR FT DDERYGNHDQGQSIHALPAPHLCGKVHAVGGPCPTRESEVKYR" FT CDS 2828. .3667 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /protein_id="ACJ03578.1" FT /translation="MELSKTASTTGELINLLHGETTVDELRELGLGIMVPVRGTNTLTH FT TPLYPPRRQLTLSRFFSGRWRTKKTGGMLFIEKLVIVFVPHVPDTSPGQAVIWVHDTAL FT PGLEPIGTGQKVCIPLSSGPRLVAFYPNYSIPLSDSAMNAPRCFSLVTQLEGVRLEQGA FT SAFSLYSMWQPVIEERAQSYLPTQPEDVAIQRHNILSQLRDLSQRTRYLHAAMTNDMGT FT TTRGSQSMRYPPLTFAEKSTQLVARAPHGSLRSSIDSHHPDELGPEVHRDNNTTGQR" FT 3'UTR 3665. .4193 XX SQ Sequence 4193 BP; 1024 A; 1129 C; 1137 G; 903 T; 0 other; fj188473 Length: 4193 03-NOV-2008 Type: N Check: 8350 .. 1 gaaaatctta ctcatctcga tcatgagttt tctcaagcgc atattaaagc 51 acttggattc ccaatttagc cctgccccgg gcgtatacaa tagggatgtt 101 tgcgctgaac tctacggcgc agagtggggg gtgttgatca cccaggagag 151 gatgacgcgt gctctttctg ttgagcatga gcgttggtat accggtcgtg 201 ttgagaccga cgtctacata ccagttgccc agtatgtaga tccacgggat 251 gtggaggctg aacccaccag ccaacaaggc aacagcaccg gggttgataa 301 ccccgtgaac aactgttctg gcaccgttcc caccatgccc gccactgaag 351 tgattccagt ggatggcctt ggtggtcgta gagtcggtgt ggtcccagca 401 cctgagggtc ccattccttg tgaggggaat gtgtacgcca tcctgcggat 451 ggcggacccc actgctgacg cctcggagtc aagtgacgac gaggaggaca 501 cttgctgccc tgcatatatc catgcagcaa gtaactctgt ggccgagcat 551 agtgcgaatg ccgtgccacc tccgatggag ggtgtacacc ctgggactag 601 cccagatggt gtcccgtcat cgtcgagcgc cgttgggatt agcctggcgg 651 ttgacgtaac ccacgtcaac accgtggatg cctctacgga gatgccgacc 701 aaggtcgaag gccctgacga gggcgtcagc accagcccgt tacaagaggc 751 tggaccctcc atggcgtttg tagacgccag cagcgttgcc atggagctcc 801 gggcgcggtt tggataccgc agcaaaaatc ccgccaacct cgaattgggc 851 gggagagtgg ccagggacat cctcaaggga tgtggggctg ttaggagcga 901 gaactattat ctcgcccaac tcgcggtgca actgtggttt gcgcccactc 951 tcttggacct ggtcctccgt ggaccggtcc aggatttttg ctagggggcg 1001 ttctggttcg ggagggggtg tgcacaagtg tcatacctaa agtattgtcc 1051 ccctccctaa ccatcaggcc ggctgatcgc ccccggcctg tgagtagagt 1101 gtcgtaccag attgacgcgg tacggcctct agctgactat ggagtacaca 1151 acaactccct caaaaacctc gtgcgtggaa taaacgagag agtgttttac 1201 atagacaacg tcggaaccaa gcctgtccaa ccgagcggac acggcttctc 1251 ctctatacga gacgatatta aagcgtttcg cgttgtccca tggaccatgg 1301 agcaggtagt cgcaagctac agtggtagcc aacagaccag gtacaacacc 1351 gccatgcagt ccatatatga aaaaccattc aacagggatg acgctagggt 1401 gtccactttt atcaaggcag agaagatcaa cttcacagcc aaaccggacc 1451 cagcgccccg tgtgatccag ccgagagatc caaggttcaa catatgcttt 1501 gcaaaattca tcaaaccctt ggaaccaatg ttgtacaaag ccttaggcag 1551 gctttataag cacccctgta tagcaaaggg gtttaacgct tttcagactg 1601 gtgatataat agccaagaaa tggcgctctt ttagagaccc agtctgtgtc 1651 ggattagatg catccaggtt tgaccaacac gttagtgtgg ccgctttgaa 1701 attcacgcac aaagtgtata agcggtttgt cagagatccg gagtttgacc 1751 gcctcctcca gttaatgtat acaaacaagg ggaggggcac cgccaaagat 1801 ggcgtggtca agtacaaagt caaaggatgt cggatgagtg gggatatgga 1851 cacggcctta ggcaactgcg ttcttatggt gccgatgacc agagaactat 1901 gcaagaggct cgagattccc catgaactaa tggacaatgg agatgactgt 1951 atagtaattt tcgataagga acatctctcc aaattccaga gagccgtcaa 2001 gccttacttt aaagatctcg gattcagtat gaaggtggaa gccccagtct 2051 ttaagctaga gcagatcgag ttttgccaga cccagcctgt atttgatggc 2101 acccaatgga gaatggtcag gcaggtaaac tctatagcta aagacttgtg 2151 tagtgtaata tcttgggaac aactactata ctggtgggat gcaatcggca 2201 cgtgtggatt ggccttagca ggaggcatac ctgtactcca cagcttttac 2251 aaatggctgt gtaggattgg cacaaggggg tctaatgttg ataaacaccc 2301 cctgtttaag tgcggaatgg tctacttgtc ccttgggatg gacagcgcct 2351 ccaaacgtat tactccggag ggtagactat cgttcgctag cgcttttggc 2401 atcagcccag ccatgcaagt ggctctggag ggcatttatg ataagatggg 2451 taaccctaag ggtagctcag tttgccaagt tgcgcagagt cacgacttca 2501 atgactggtt tacaccagac agtagataca aggagttgga ctcgggttgc 2551 caagacctaa caactgtaga gagtacagcg caggttgagt tccccattta 2601 cggtggactc tacctcccac acatcgaagc gtagcttgcg ggagtcgtcc 2651 cgcggttggg tgattcccaa ccagtcagcc agcccccacc gaatcttgca 2701 agaggggaag ccaagtgatt tggtcatgga ttgtggctga tccatgaggg 2751 gcctgccccc aattttcgtc aaccctgcag caggcaatgc aggaagggca 2801 attccatgac attcagaata atctacgatg gaattgagca agacagcatc 2851 tacaacagga gaactcatca acctcctgca cggagaaaca acagtggacg 2901 aactgcgaga gctagggctt gggattatgg tcccagtccg tggcaccaat 2951 acgcttaccc acactccgct ctaccccccc cggcgccagc ttactttgag 3001 ccgctttttc agcggccgtt ggcgtaccaa gaagaccggg ggcatgctgt 3051 ttatcgagaa gctcgtcata gtgttcgttc cgcacgtgcc agacacgtcg 3101 ccgggacaag cagtgatttg ggtgcacgac accgccctcc caggtctgga 3151 accgatcggg acgggccaga aggtgtgtat acccttgtcc tcgggacccc 3201 ggctggtcgc tttctatccg aactattcca ttcctttgag cgactcagcc 3251 atgaatgccc ctcggtgctt cagtctagta acccagttag agggggtacg 3301 actggagcaa ggggcgagcg ccttctctct ctactccatg tggcagccag 3351 tcatagagga gagggcgcag tcctacctgc cgacacaacc ggaggatgtg 3401 gcgatacaac gtcacaacat cctatcccaa ctccgggact tgagccagcg 3451 cacgcggtac ctacacgccg cgatgacgaa cgatatggga accacgacca 3501 ggggcagtca atccatgcgc tacccgcccc tcacctttgc ggaaaagtcc 3551 acgcagttgg tggcccgtgc cccacacggg agtctgaggt caagtatcga 3601 tagccaccac ccagatgaac tgggccctga ggtgcacagg gacaacaaca 3651 caaccggcca gcgctaagta tcgctgctgc cagatcccat tgatgtcggt 3701 cattaaatcg atctgccaat ggttaaatta acgaggagca tgtagtgtaa 3751 catgcagccg cccctagcct tactatccgt ggactccagg ccttccttcc 3801 tgcacaacac acggcgatgg cactgtcata gacaggttta atgggctgat 3851 cacccaagcg acataggtag cgggcccatg atacactaca cggcgattac 3901 gcccccctca accccggtgg agccaaagtg gcctaacaca cgaataaccc 3951 accttgggac caaacaaaat ctcctccccc cacatatagg tggttgccca 4001 tgtacatagt tcgggcggtc tgcacttggc agacgtagag agggtttccg 4051 atccttaaaa tcgggccgcg acacacggct tgtgtcactg agctacagta 4101 aaagcccgtc tcaactggcg gttaccaggc ccgggcgtat aatagggact 4151 ggagttgact ttgaaattag cgcagtcagc cggctgcgcg ccc