Sequence of DPV Carrot mottle virus

Carrot mottle virus isolate Weddel, complete genome.

ACC No: FJ188473

Dated: 2008-11-03 | Length: 4193 | CRC: -474230453

                
ID   FJ188473; SV 1; linear; genomic RNA; STD; VRL; 4193 BP.
XX
AC   FJ188473;
XX
DT   03-NOV-2008 (Rel. 97, Created)
DT   03-NOV-2008 (Rel. 97, Last updated, Version 1)
XX
DE   Carrot mottle virus isolate Weddel, complete genome.
XX
KW   .
XX
OS   Carrot mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN   [1]
RP   1-4193
RA   Menzel W., Maiss E., Vetten H.J.;
RT   "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus
RT   from Germany";
RL   Unpublished.
XX
RN   [2]
RP   1-4193
RA   Menzel W., Maiss E., Vetten H.J.;
RT   ;
RL   Submitted (05-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL   Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet
RL   Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4193
FT                   /organism="Carrot mottle virus"
FT                   /host="Daucus carota"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="Weddel"
FT                   /mol_type="genomic RNA"
FT                   /country="Germany"
FT                   /collection_date="2005"
FT                   /note="acronym: CMoV"
FT                   /db_xref="taxon:68033"
FT   5'UTR           1. .22
FT   CDS             join(23. .982,982. .2634)
FT                   /codon_start=1
FT                   /ribosomal_slippage
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="RdRp"
FT                   /protein_id="ACJ03580.1"
FT                   /translation="MSFLKRILKHLDSQFSPAPGVYNRDVCAELYGAEWGVLITQERMT
FT                   RALSVEHERWYTGRVETDVYIPVAQYVDPRDVEAEPTSQQGNSTGVDNPVNNCSGTVPT
FT                   MPATEVIPVDGLGGRRVGVVPAPEGPIPCEGNVYAILRMADPTADASESSDDEEDTCCP
FT                   AYIHAASNSVAEHSANAVPPPMEGVHPGTSPDGVPSSSSAVGISLAVDVTHVNTVDAST
FT                   EMPTKVEGPDEGVSTSPLQEAGPSMAFVDASSVAMELRARFGYRSKNPANLELGGRVAR
FT                   DILKGCGAVRSENYYLAQLAVQLWFAPTLLDLVLRGPVQGFLLGGVLVREGVCTSVIPK
FT                   VLSPSLTIRPADRPRPVSRVSYQIDAVRPLADYGVHNNSLKNLVRGINERVFYIDNVGT
FT                   KPVQPSGHGFSSIRDDIKAFRVVPWTMEQVVASYSGSQQTRYNTAMQSIYEKPFNRDDA
FT                   RVSTFIKAEKINFTAKPDPAPRVIQPRDPRFNICFAKFIKPLEPMLYKALGRLYKHPCI
FT                   AKGFNAFQTGDIIAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPEFD
FT                   RLLQLMYTNKGRGTAKDGVVKYKVKGCRMSGDMDTALGNCVLMVPMTRELCKRLEIPHE
FT                   LMDNGDDCIVIFDKEHLSKFQRAVKPYFKDLGFSMKVEAPVFKLEQIEFCQTQPVFDGT
FT                   QWRMVRQVNSIAKDLCSVISWEQLLYWWDAIGTCGLALAGGIPVLHSFYKWLCRIGTRG
FT                   SNVDKHPLFKCGMVYLSLGMDSASKRITPEGRLSFASAFGISPAMQVALEGIYDKMGNP
FT                   KGSSVCQVAQSHDFNDWFTPDSRYKELDSGCQDLTTVESTAQVEFPIYGGLYLPHIEA"
FT   CDS             2806. .3603
FT                   /codon_start=1
FT                   /product="long-distance movement protein"
FT                   /protein_id="ACJ03579.1"
FT                   /translation="MTFRIIYDGIEQDSIYNRRTHQPPARRNNSGRTARARAWDYGPSP
FT                   WHQYAYPHSALPPPAPAYFEPLFQRPLAYQEDRGHAVYREARHSVRSARARHVAGTSSD
FT                   LGARHRPPRSGTDRDGPEGVYTLVLGTPAGRFLSELFHSFERLSHECPSVLQSSNPVRG
FT                   GTTGARGERLLSLLHVAASHRGEGAVLPADTTGGCGDTTSQHPIPTPGLEPAHAVPTRR
FT                   DDERYGNHDQGQSIHALPAPHLCGKVHAVGGPCPTRESEVKYR"
FT   CDS             2828. .3667
FT                   /codon_start=1
FT                   /product="cell-to-cell movement protein"
FT                   /protein_id="ACJ03578.1"
FT                   /translation="MELSKTASTTGELINLLHGETTVDELRELGLGIMVPVRGTNTLTH
FT                   TPLYPPRRQLTLSRFFSGRWRTKKTGGMLFIEKLVIVFVPHVPDTSPGQAVIWVHDTAL
FT                   PGLEPIGTGQKVCIPLSSGPRLVAFYPNYSIPLSDSAMNAPRCFSLVTQLEGVRLEQGA
FT                   SAFSLYSMWQPVIEERAQSYLPTQPEDVAIQRHNILSQLRDLSQRTRYLHAAMTNDMGT
FT                   TTRGSQSMRYPPLTFAEKSTQLVARAPHGSLRSSIDSHHPDELGPEVHRDNNTTGQR"
FT   3'UTR           3665. .4193
XX
SQ   Sequence 4193 BP; 1024 A; 1129 C; 1137 G; 903 T; 0 other;

fj188473 Length: 4193  03-NOV-2008  Type: N  Check: 8350  ..

       1  gaaaatctta ctcatctcga tcatgagttt tctcaagcgc atattaaagc
      51  acttggattc ccaatttagc cctgccccgg gcgtatacaa tagggatgtt
     101  tgcgctgaac tctacggcgc agagtggggg gtgttgatca cccaggagag
     151  gatgacgcgt gctctttctg ttgagcatga gcgttggtat accggtcgtg
     201  ttgagaccga cgtctacata ccagttgccc agtatgtaga tccacgggat
     251  gtggaggctg aacccaccag ccaacaaggc aacagcaccg gggttgataa
     301  ccccgtgaac aactgttctg gcaccgttcc caccatgccc gccactgaag
     351  tgattccagt ggatggcctt ggtggtcgta gagtcggtgt ggtcccagca
     401  cctgagggtc ccattccttg tgaggggaat gtgtacgcca tcctgcggat
     451  ggcggacccc actgctgacg cctcggagtc aagtgacgac gaggaggaca
     501  cttgctgccc tgcatatatc catgcagcaa gtaactctgt ggccgagcat
     551  agtgcgaatg ccgtgccacc tccgatggag ggtgtacacc ctgggactag
     601  cccagatggt gtcccgtcat cgtcgagcgc cgttgggatt agcctggcgg
     651  ttgacgtaac ccacgtcaac accgtggatg cctctacgga gatgccgacc
     701  aaggtcgaag gccctgacga gggcgtcagc accagcccgt tacaagaggc
     751  tggaccctcc atggcgtttg tagacgccag cagcgttgcc atggagctcc
     801  gggcgcggtt tggataccgc agcaaaaatc ccgccaacct cgaattgggc
     851  gggagagtgg ccagggacat cctcaaggga tgtggggctg ttaggagcga
     901  gaactattat ctcgcccaac tcgcggtgca actgtggttt gcgcccactc
     951  tcttggacct ggtcctccgt ggaccggtcc aggatttttg ctagggggcg
    1001  ttctggttcg ggagggggtg tgcacaagtg tcatacctaa agtattgtcc
    1051  ccctccctaa ccatcaggcc ggctgatcgc ccccggcctg tgagtagagt
    1101  gtcgtaccag attgacgcgg tacggcctct agctgactat ggagtacaca
    1151  acaactccct caaaaacctc gtgcgtggaa taaacgagag agtgttttac
    1201  atagacaacg tcggaaccaa gcctgtccaa ccgagcggac acggcttctc
    1251  ctctatacga gacgatatta aagcgtttcg cgttgtccca tggaccatgg
    1301  agcaggtagt cgcaagctac agtggtagcc aacagaccag gtacaacacc
    1351  gccatgcagt ccatatatga aaaaccattc aacagggatg acgctagggt
    1401  gtccactttt atcaaggcag agaagatcaa cttcacagcc aaaccggacc
    1451  cagcgccccg tgtgatccag ccgagagatc caaggttcaa catatgcttt
    1501  gcaaaattca tcaaaccctt ggaaccaatg ttgtacaaag ccttaggcag
    1551  gctttataag cacccctgta tagcaaaggg gtttaacgct tttcagactg
    1601  gtgatataat agccaagaaa tggcgctctt ttagagaccc agtctgtgtc
    1651  ggattagatg catccaggtt tgaccaacac gttagtgtgg ccgctttgaa
    1701  attcacgcac aaagtgtata agcggtttgt cagagatccg gagtttgacc
    1751  gcctcctcca gttaatgtat acaaacaagg ggaggggcac cgccaaagat
    1801  ggcgtggtca agtacaaagt caaaggatgt cggatgagtg gggatatgga
    1851  cacggcctta ggcaactgcg ttcttatggt gccgatgacc agagaactat
    1901  gcaagaggct cgagattccc catgaactaa tggacaatgg agatgactgt
    1951  atagtaattt tcgataagga acatctctcc aaattccaga gagccgtcaa
    2001  gccttacttt aaagatctcg gattcagtat gaaggtggaa gccccagtct
    2051  ttaagctaga gcagatcgag ttttgccaga cccagcctgt atttgatggc
    2101  acccaatgga gaatggtcag gcaggtaaac tctatagcta aagacttgtg
    2151  tagtgtaata tcttgggaac aactactata ctggtgggat gcaatcggca
    2201  cgtgtggatt ggccttagca ggaggcatac ctgtactcca cagcttttac
    2251  aaatggctgt gtaggattgg cacaaggggg tctaatgttg ataaacaccc
    2301  cctgtttaag tgcggaatgg tctacttgtc ccttgggatg gacagcgcct
    2351  ccaaacgtat tactccggag ggtagactat cgttcgctag cgcttttggc
    2401  atcagcccag ccatgcaagt ggctctggag ggcatttatg ataagatggg
    2451  taaccctaag ggtagctcag tttgccaagt tgcgcagagt cacgacttca
    2501  atgactggtt tacaccagac agtagataca aggagttgga ctcgggttgc
    2551  caagacctaa caactgtaga gagtacagcg caggttgagt tccccattta
    2601  cggtggactc tacctcccac acatcgaagc gtagcttgcg ggagtcgtcc
    2651  cgcggttggg tgattcccaa ccagtcagcc agcccccacc gaatcttgca
    2701  agaggggaag ccaagtgatt tggtcatgga ttgtggctga tccatgaggg
    2751  gcctgccccc aattttcgtc aaccctgcag caggcaatgc aggaagggca
    2801  attccatgac attcagaata atctacgatg gaattgagca agacagcatc
    2851  tacaacagga gaactcatca acctcctgca cggagaaaca acagtggacg
    2901  aactgcgaga gctagggctt gggattatgg tcccagtccg tggcaccaat
    2951  acgcttaccc acactccgct ctaccccccc cggcgccagc ttactttgag
    3001  ccgctttttc agcggccgtt ggcgtaccaa gaagaccggg ggcatgctgt
    3051  ttatcgagaa gctcgtcata gtgttcgttc cgcacgtgcc agacacgtcg
    3101  ccgggacaag cagtgatttg ggtgcacgac accgccctcc caggtctgga
    3151  accgatcggg acgggccaga aggtgtgtat acccttgtcc tcgggacccc
    3201  ggctggtcgc tttctatccg aactattcca ttcctttgag cgactcagcc
    3251  atgaatgccc ctcggtgctt cagtctagta acccagttag agggggtacg
    3301  actggagcaa ggggcgagcg ccttctctct ctactccatg tggcagccag
    3351  tcatagagga gagggcgcag tcctacctgc cgacacaacc ggaggatgtg
    3401  gcgatacaac gtcacaacat cctatcccaa ctccgggact tgagccagcg
    3451  cacgcggtac ctacacgccg cgatgacgaa cgatatggga accacgacca
    3501  ggggcagtca atccatgcgc tacccgcccc tcacctttgc ggaaaagtcc
    3551  acgcagttgg tggcccgtgc cccacacggg agtctgaggt caagtatcga
    3601  tagccaccac ccagatgaac tgggccctga ggtgcacagg gacaacaaca
    3651  caaccggcca gcgctaagta tcgctgctgc cagatcccat tgatgtcggt
    3701  cattaaatcg atctgccaat ggttaaatta acgaggagca tgtagtgtaa
    3751  catgcagccg cccctagcct tactatccgt ggactccagg ccttccttcc
    3801  tgcacaacac acggcgatgg cactgtcata gacaggttta atgggctgat
    3851  cacccaagcg acataggtag cgggcccatg atacactaca cggcgattac
    3901  gcccccctca accccggtgg agccaaagtg gcctaacaca cgaataaccc
    3951  accttgggac caaacaaaat ctcctccccc cacatatagg tggttgccca
    4001  tgtacatagt tcgggcggtc tgcacttggc agacgtagag agggtttccg
    4051  atccttaaaa tcgggccgcg acacacggct tgtgtcactg agctacagta
    4101  aaagcccgtc tcaactggcg gttaccaggc ccgggcgtat aatagggact
    4151  ggagttgact ttgaaattag cgcagtcagc cggctgcgcg ccc