Sequence of DPV Carrot mottle virus
Carrot mottle virus isolate Weddel, complete genome.
ACC No: FJ188473
Dated: 2008-11-03 | Length: 4193 | CRC: -474230453
ID FJ188473; SV 1; linear; genomic RNA; STD; VRL; 4193 BP.
XX
AC FJ188473;
XX
DT 03-NOV-2008 (Rel. 97, Created)
DT 03-NOV-2008 (Rel. 97, Last updated, Version 1)
XX
DE Carrot mottle virus isolate Weddel, complete genome.
XX
KW .
XX
OS Carrot mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-4193
RA Menzel W., Maiss E., Vetten H.J.;
RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus
RT from Germany";
RL Unpublished.
XX
RN [2]
RP 1-4193
RA Menzel W., Maiss E., Vetten H.J.;
RT ;
RL Submitted (05-SEP-2008) to the EMBL/GenBank/DDBJ databases.
RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet
RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .4193
FT /organism="Carrot mottle virus"
FT /host="Daucus carota"
FT /lab_host="Nicotiana benthamiana"
FT /isolate="Weddel"
FT /mol_type="genomic RNA"
FT /country="Germany"
FT /collection_date="2005"
FT /note="acronym: CMoV"
FT /db_xref="taxon:68033"
FT 5'UTR 1. .22
FT CDS join(23. .982,982. .2634)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA polymerase"
FT /note="RdRp"
FT /protein_id="ACJ03580.1"
FT /translation="MSFLKRILKHLDSQFSPAPGVYNRDVCAELYGAEWGVLITQERMT
FT RALSVEHERWYTGRVETDVYIPVAQYVDPRDVEAEPTSQQGNSTGVDNPVNNCSGTVPT
FT MPATEVIPVDGLGGRRVGVVPAPEGPIPCEGNVYAILRMADPTADASESSDDEEDTCCP
FT AYIHAASNSVAEHSANAVPPPMEGVHPGTSPDGVPSSSSAVGISLAVDVTHVNTVDAST
FT EMPTKVEGPDEGVSTSPLQEAGPSMAFVDASSVAMELRARFGYRSKNPANLELGGRVAR
FT DILKGCGAVRSENYYLAQLAVQLWFAPTLLDLVLRGPVQGFLLGGVLVREGVCTSVIPK
FT VLSPSLTIRPADRPRPVSRVSYQIDAVRPLADYGVHNNSLKNLVRGINERVFYIDNVGT
FT KPVQPSGHGFSSIRDDIKAFRVVPWTMEQVVASYSGSQQTRYNTAMQSIYEKPFNRDDA
FT RVSTFIKAEKINFTAKPDPAPRVIQPRDPRFNICFAKFIKPLEPMLYKALGRLYKHPCI
FT AKGFNAFQTGDIIAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPEFD
FT RLLQLMYTNKGRGTAKDGVVKYKVKGCRMSGDMDTALGNCVLMVPMTRELCKRLEIPHE
FT LMDNGDDCIVIFDKEHLSKFQRAVKPYFKDLGFSMKVEAPVFKLEQIEFCQTQPVFDGT
FT QWRMVRQVNSIAKDLCSVISWEQLLYWWDAIGTCGLALAGGIPVLHSFYKWLCRIGTRG
FT SNVDKHPLFKCGMVYLSLGMDSASKRITPEGRLSFASAFGISPAMQVALEGIYDKMGNP
FT KGSSVCQVAQSHDFNDWFTPDSRYKELDSGCQDLTTVESTAQVEFPIYGGLYLPHIEA"
FT CDS 2806. .3603
FT /codon_start=1
FT /product="long-distance movement protein"
FT /protein_id="ACJ03579.1"
FT /translation="MTFRIIYDGIEQDSIYNRRTHQPPARRNNSGRTARARAWDYGPSP
FT WHQYAYPHSALPPPAPAYFEPLFQRPLAYQEDRGHAVYREARHSVRSARARHVAGTSSD
FT LGARHRPPRSGTDRDGPEGVYTLVLGTPAGRFLSELFHSFERLSHECPSVLQSSNPVRG
FT GTTGARGERLLSLLHVAASHRGEGAVLPADTTGGCGDTTSQHPIPTPGLEPAHAVPTRR
FT DDERYGNHDQGQSIHALPAPHLCGKVHAVGGPCPTRESEVKYR"
FT CDS 2828. .3667
FT /codon_start=1
FT /product="cell-to-cell movement protein"
FT /protein_id="ACJ03578.1"
FT /translation="MELSKTASTTGELINLLHGETTVDELRELGLGIMVPVRGTNTLTH
FT TPLYPPRRQLTLSRFFSGRWRTKKTGGMLFIEKLVIVFVPHVPDTSPGQAVIWVHDTAL
FT PGLEPIGTGQKVCIPLSSGPRLVAFYPNYSIPLSDSAMNAPRCFSLVTQLEGVRLEQGA
FT SAFSLYSMWQPVIEERAQSYLPTQPEDVAIQRHNILSQLRDLSQRTRYLHAAMTNDMGT
FT TTRGSQSMRYPPLTFAEKSTQLVARAPHGSLRSSIDSHHPDELGPEVHRDNNTTGQR"
FT 3'UTR 3665. .4193
XX
SQ Sequence 4193 BP; 1024 A; 1129 C; 1137 G; 903 T; 0 other;
fj188473 Length: 4193 03-NOV-2008 Type: N Check: 8350 ..
1 gaaaatctta ctcatctcga tcatgagttt tctcaagcgc atattaaagc
51 acttggattc ccaatttagc cctgccccgg gcgtatacaa tagggatgtt
101 tgcgctgaac tctacggcgc agagtggggg gtgttgatca cccaggagag
151 gatgacgcgt gctctttctg ttgagcatga gcgttggtat accggtcgtg
201 ttgagaccga cgtctacata ccagttgccc agtatgtaga tccacgggat
251 gtggaggctg aacccaccag ccaacaaggc aacagcaccg gggttgataa
301 ccccgtgaac aactgttctg gcaccgttcc caccatgccc gccactgaag
351 tgattccagt ggatggcctt ggtggtcgta gagtcggtgt ggtcccagca
401 cctgagggtc ccattccttg tgaggggaat gtgtacgcca tcctgcggat
451 ggcggacccc actgctgacg cctcggagtc aagtgacgac gaggaggaca
501 cttgctgccc tgcatatatc catgcagcaa gtaactctgt ggccgagcat
551 agtgcgaatg ccgtgccacc tccgatggag ggtgtacacc ctgggactag
601 cccagatggt gtcccgtcat cgtcgagcgc cgttgggatt agcctggcgg
651 ttgacgtaac ccacgtcaac accgtggatg cctctacgga gatgccgacc
701 aaggtcgaag gccctgacga gggcgtcagc accagcccgt tacaagaggc
751 tggaccctcc atggcgtttg tagacgccag cagcgttgcc atggagctcc
801 gggcgcggtt tggataccgc agcaaaaatc ccgccaacct cgaattgggc
851 gggagagtgg ccagggacat cctcaaggga tgtggggctg ttaggagcga
901 gaactattat ctcgcccaac tcgcggtgca actgtggttt gcgcccactc
951 tcttggacct ggtcctccgt ggaccggtcc aggatttttg ctagggggcg
1001 ttctggttcg ggagggggtg tgcacaagtg tcatacctaa agtattgtcc
1051 ccctccctaa ccatcaggcc ggctgatcgc ccccggcctg tgagtagagt
1101 gtcgtaccag attgacgcgg tacggcctct agctgactat ggagtacaca
1151 acaactccct caaaaacctc gtgcgtggaa taaacgagag agtgttttac
1201 atagacaacg tcggaaccaa gcctgtccaa ccgagcggac acggcttctc
1251 ctctatacga gacgatatta aagcgtttcg cgttgtccca tggaccatgg
1301 agcaggtagt cgcaagctac agtggtagcc aacagaccag gtacaacacc
1351 gccatgcagt ccatatatga aaaaccattc aacagggatg acgctagggt
1401 gtccactttt atcaaggcag agaagatcaa cttcacagcc aaaccggacc
1451 cagcgccccg tgtgatccag ccgagagatc caaggttcaa catatgcttt
1501 gcaaaattca tcaaaccctt ggaaccaatg ttgtacaaag ccttaggcag
1551 gctttataag cacccctgta tagcaaaggg gtttaacgct tttcagactg
1601 gtgatataat agccaagaaa tggcgctctt ttagagaccc agtctgtgtc
1651 ggattagatg catccaggtt tgaccaacac gttagtgtgg ccgctttgaa
1701 attcacgcac aaagtgtata agcggtttgt cagagatccg gagtttgacc
1751 gcctcctcca gttaatgtat acaaacaagg ggaggggcac cgccaaagat
1801 ggcgtggtca agtacaaagt caaaggatgt cggatgagtg gggatatgga
1851 cacggcctta ggcaactgcg ttcttatggt gccgatgacc agagaactat
1901 gcaagaggct cgagattccc catgaactaa tggacaatgg agatgactgt
1951 atagtaattt tcgataagga acatctctcc aaattccaga gagccgtcaa
2001 gccttacttt aaagatctcg gattcagtat gaaggtggaa gccccagtct
2051 ttaagctaga gcagatcgag ttttgccaga cccagcctgt atttgatggc
2101 acccaatgga gaatggtcag gcaggtaaac tctatagcta aagacttgtg
2151 tagtgtaata tcttgggaac aactactata ctggtgggat gcaatcggca
2201 cgtgtggatt ggccttagca ggaggcatac ctgtactcca cagcttttac
2251 aaatggctgt gtaggattgg cacaaggggg tctaatgttg ataaacaccc
2301 cctgtttaag tgcggaatgg tctacttgtc ccttgggatg gacagcgcct
2351 ccaaacgtat tactccggag ggtagactat cgttcgctag cgcttttggc
2401 atcagcccag ccatgcaagt ggctctggag ggcatttatg ataagatggg
2451 taaccctaag ggtagctcag tttgccaagt tgcgcagagt cacgacttca
2501 atgactggtt tacaccagac agtagataca aggagttgga ctcgggttgc
2551 caagacctaa caactgtaga gagtacagcg caggttgagt tccccattta
2601 cggtggactc tacctcccac acatcgaagc gtagcttgcg ggagtcgtcc
2651 cgcggttggg tgattcccaa ccagtcagcc agcccccacc gaatcttgca
2701 agaggggaag ccaagtgatt tggtcatgga ttgtggctga tccatgaggg
2751 gcctgccccc aattttcgtc aaccctgcag caggcaatgc aggaagggca
2801 attccatgac attcagaata atctacgatg gaattgagca agacagcatc
2851 tacaacagga gaactcatca acctcctgca cggagaaaca acagtggacg
2901 aactgcgaga gctagggctt gggattatgg tcccagtccg tggcaccaat
2951 acgcttaccc acactccgct ctaccccccc cggcgccagc ttactttgag
3001 ccgctttttc agcggccgtt ggcgtaccaa gaagaccggg ggcatgctgt
3051 ttatcgagaa gctcgtcata gtgttcgttc cgcacgtgcc agacacgtcg
3101 ccgggacaag cagtgatttg ggtgcacgac accgccctcc caggtctgga
3151 accgatcggg acgggccaga aggtgtgtat acccttgtcc tcgggacccc
3201 ggctggtcgc tttctatccg aactattcca ttcctttgag cgactcagcc
3251 atgaatgccc ctcggtgctt cagtctagta acccagttag agggggtacg
3301 actggagcaa ggggcgagcg ccttctctct ctactccatg tggcagccag
3351 tcatagagga gagggcgcag tcctacctgc cgacacaacc ggaggatgtg
3401 gcgatacaac gtcacaacat cctatcccaa ctccgggact tgagccagcg
3451 cacgcggtac ctacacgccg cgatgacgaa cgatatggga accacgacca
3501 ggggcagtca atccatgcgc tacccgcccc tcacctttgc ggaaaagtcc
3551 acgcagttgg tggcccgtgc cccacacggg agtctgaggt caagtatcga
3601 tagccaccac ccagatgaac tgggccctga ggtgcacagg gacaacaaca
3651 caaccggcca gcgctaagta tcgctgctgc cagatcccat tgatgtcggt
3701 cattaaatcg atctgccaat ggttaaatta acgaggagca tgtagtgtaa
3751 catgcagccg cccctagcct tactatccgt ggactccagg ccttccttcc
3801 tgcacaacac acggcgatgg cactgtcata gacaggttta atgggctgat
3851 cacccaagcg acataggtag cgggcccatg atacactaca cggcgattac
3901 gcccccctca accccggtgg agccaaagtg gcctaacaca cgaataaccc
3951 accttgggac caaacaaaat ctcctccccc cacatatagg tggttgccca
4001 tgtacatagt tcgggcggtc tgcacttggc agacgtagag agggtttccg
4051 atccttaaaa tcgggccgcg acacacggct tgtgtcactg agctacagta
4101 aaagcccgtc tcaactggcg gttaccaggc ccgggcgtat aatagggact
4151 ggagttgact ttgaaattag cgcagtcagc cggctgcgcg ccc