Sequence of DPV Banana bunchy top Y alphasatellite

Banana bunchy top virus satellite Y strain TW3 clone TW3Y 02 replication initiation protein gene, complete cds.

ACC No: FJ389724

Dated: 2010-09-14 | Length: 1098 | CRC: 139079084

                
ID   FJ389724; SV 1; linear; genomic DNA; STD; VRL; 1098 BP.
XX
AC   FJ389724;
XX
DT   16-DEC-2008 (Rel. 98, Created)
DT   14-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE   Banana bunchy top virus satellite Y strain TW3 clone TW3Y 02 replication
DE   initiation protein gene, complete cds.
XX
KW   .
XX
OS   Banana bunchy top virus satellite Y
OC   Viruses; Satellites; Satellite Nucleic Acids;
OC   Single stranded DNA satellites.
XX
RN   [1]
RP   1-1098
RX   PUBMED; 19522579.
RA   Fu H.C., Hu J.M., Hung T.H., Su H.J., Yeh H.H.;
RT   "Unusual events involved in Banana bunchy top virus strain evolution";
RL   Phytopathology 99(7):812-822(2009).
XX
RN   [2]
RP   1-1098
RA   Fu H.C., Huang Y.C., Yeh H.H.;
RT   ;
RL   Submitted (16-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology and Microbiology, National Taiwan University, 1 Sec. 4,
RL   Roosevelt Road, Taipei 106, Taiwan
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1098
FT                   /organism="Banana bunchy top virus satellite Y"
FT                   /host="banana"
FT                   /strain="TW3"
FT                   /mol_type="genomic DNA"
FT                   /country="Taiwan"
FT                   /clone="TW3Y 02"
FT                   /db_xref="taxon:497970"
FT   stem_loop       1. .84
FT   CDS             88. .942
FT                   /codon_start=1
FT                   /product="replication initiation protein"
FT                   /note="rep Y"
FT                   /db_xref="GOA:B7TVN6"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:B7TVN6"
FT                   /protein_id="ACJ36781.1"
FT                   /translation="MSSFKWCFTLNYSSAAEREDFLSLLKEEDVHYAVVGDEVAPSTGQ
FT                   KHLQGYLSLKKSIKLGGLKKRYSSKAHWERARGTGEDNSKYCSKETLILELGFPVVNGS
FT                   NKRKISEMVARSPDRMKIEQPEMFHRYQSVNCMKKFKEEFVHPCLDRPWQIQLTEAIDE
FT                   EPDDRSIIWVYGPYGNEGKSTYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDI
FT                   PRCNQDYLNYDVIEALKDRVIESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKI
FT                   IYC"
XX
SQ   Sequence 1098 BP; 334 A; 211 C; 264 G; 289 T; 0 other;

fj389724 Length: 1098  14-SEP-2010  Type: N  Check: 6763  ..

       1  tactttaacc tcctcgccct atataagagg aggtggctta gtattaccca
      51  cctcctcgcc ttacctcctc gccctgacgt catcaatatg tcctctttta
     101  aatggtgctt cactctgaac tactcctccg cggcagagag agaagacttt
     151  ctctctcttc tgaaggagga ggatgtccac tacgctgtcg tcggcgacga
     201  agtcgctccg agcaccggcc agaagcacct ccagggatat ctatccctga
     251  aaaaatctat taagcttggt ggattgaaga agaggtactc ttcgaaggct
     301  cactgggaga gggcgagggg aacaggcgaa gataattcga agtactgttc
     351  caaagaaacc ctaatcctcg aattagggtt tcctgttgtt aatggttcta
     401  ataaaaggaa aatatcggag atggttgctc gttctcctga tcgcatgaaa
     451  attgaacagc ctgagatgtt tcacagatat caatctgtga attgtatgaa
     501  aaaattcaag gaggagttcg ttcatccttg cctcgataga ccatggcaga
     551  tacaattgac ggaggcaatt gacgaggaac ccgatgatcg aagcatcatc
     601  tgggtgtatg gtccttatgg taatgaaggg aagtctacat atgcgaagtc
     651  actaatcaag aaggattggt tctacaccag gggtgggaag aaggagaata
     701  tcttattctc ctatgtggac gaaggatctg acaagcatat agtatttgat
     751  attcctcgtt gtaatcagga ttatttaaat tatgatgtaa tagaggcatt
     801  aaaggatagg gttatagaga gtactaaata caaacccata aagatagttg
     851  aattaggtaa aatacatgta atcgtcatgg cgaatttcat gcctgacttc
     901  tgtaaaatct ccgaagatcg aataaaaatc atttattgct gacaagcgta
     951  cgctatgaca aaaagggaaa aatgaaaaat cgggggttga ttggtctatc
    1001  gtaacgatta agggccgcag gcccgtcaag atggatgaac ggtcagattt
    1051  gattgtcagg atgaacggtc agatttgatt gcttagccac gaaggaac