Sequence of DPV Soybean dwarf virus
Soybean dwarf virus isolate JoeDaviess3 minor coat protein, coat protein, and P4 genes, complete cds.
ACC No: FJ390402
Dated: 2008-12-16 | Length: 2073 | CRC: -1759010012
ID FJ390402; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
XX
AC FJ390402;
XX
DT 16-DEC-2008 (Rel. 98, Created)
DT 16-DEC-2008 (Rel. 98, Last updated, Version 1)
XX
DE Soybean dwarf virus isolate JoeDaviess3 minor coat protein, coat protein,
DE and P4 genes, complete cds.
XX
KW .
XX
OS Soybean dwarf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus.
XX
RN [1]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT "Sequence diversity of s of Soybean dwarf virus isolates from the
RT midwestern United States";
RL Unpublished.
XX
RN [2]
RP 1-2073
RA Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT ;
RL Submitted (16-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL Urbana, IL 61801, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .2073
FT /organism="Soybean dwarf virus"
FT /host="Glycine max (soybean)"
FT /isolate="JoeDaviess3"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Sep-2007"
FT /db_xref="taxon:12049"
FT CDS 1. .2073
FT /codon_start=1
FT /transl_except=(pos:601. .603,aa:OTHER)
FT /product="minor coat protein"
FT /note="readthrough protein; translated by readthrough of
FT in-frame termination codon"
FT /protein_id="ACJ24828.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVILTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT EPTPAKHERFIVYTGTMSTLISARQNSDSISLYSIRDQRVRYIEDENANWTYIKSQWYS
FT QNSVEAVPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQNKVWNVG
FT VQNNVTISNNKADADWKYGHPNLTINGERFDQNQVVEKDGTVSFHLVTTGPNASFFLVG
FT PPVKKIAKYNYCISYGAWTDRDMEFGMVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRS
FT HRLQEMPPMREDFSEEDSSSSNDNTYETDNSPLTIHLVKAGDEENHTTDRSDDVEPTLH
FT DADVMKFSGFVGAKDRFTLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP
FT WSGIKIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPTPRFEPAPKSVLDRIRRRQV"
FT CDS 1. .603
FT /codon_start=1
FT /product="coat protein"
FT /note="major capsid protein"
FT /protein_id="ACJ24826.1"
FT /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT WHDTSEDQFKVHYKGNGDAKIAGSFKITIVILTQNPK"
FT CDS 17. .586
FT /codon_start=1
FT /product="P4"
FT /note="putative movement protein"
FT /protein_id="ACJ24827.1"
FT /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT EEAIFPEDQARLIHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQLQRAVRNDSPPRLSMASNGMIPV
FT KTSSRSTTRGMETPRSQAPSRSRSLS"
XX
SQ Sequence 2073 BP; 633 A; 486 C; 480 G; 474 T; 0 other;
fj390402 Length: 2073 16-DEC-2008 Type: N Check: 2540 ..
1 atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc
51 cgcacgaagc gctccacgag ttcagctcat ggctattcca acgaccaccg
101 gcgcaacaca gcgcagaaga agacaacgac gacgaaggag aaataataga
151 ggaggaggca atatttccgg aggatcaggc aaggctcata cattccagtt
201 ttcgaaggac ggcatcaatg gcagttccaa gggaactatc actttcgggc
251 cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac
301 catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc
351 ttccacctcg tcaggctcca tcgcttatga gcttgaccca cactgcaagt
401 actccgaaat tcaatcgcta ctcaataaat tctcaattac aaagagcggt
451 tcgaaacgat tccccaccaa ggttatcaat ggcctcgaat ggcatgatac
501 cagtgaagac cagttcaagg tccactacaa ggggaatgga gacgccaaga
551 tcgcaggctc cttcaagatc acgatcgtta tcttaactca gaatcccaaa
601 taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc
651 accagcacca ccacctgaac cgacgccagc caaacatgaa agattcattg
701 tttacaccgg tacaatgtca acactcatca gtgctcgaca gaactcagac
751 agtatatcac tctactcaat tcgagaccag agggtcagat atattgaaga
801 tgagaatgca aactggacgt acatcaaatc gcaatggtat tcacagaatt
851 ctgtggaagc agtaccaatg tttatctacc cagttccgca aggtacttgg
901 tcaattgaaa tctcttgtga aggctaccag gcgacgtcaa gcaccacgga
951 cccccaccgg gggaagtctg atggaatgat tgcttacgac gatgatcaaa
1001 ataaggtgtg gaatgttggt gtacaaaata atgtaaccat ttccaataac
1051 aaagccgacg ctgactggaa atatggtcac cctaatttaa caattaacgg
1101 tgaacgtttt gatcagaacc aggtagtcga gaaagatgga acagtttcgt
1151 ttcatttagt aactaccggg cccaacgcga gtttcttttt agttggccct
1201 cctgttaaga agattgccaa gtacaactat tgtatatcat acggggcttg
1251 gacagatcgc gacatggaat ttggaatggt ttctgttgtt ctcgatgaac
1301 atttagaggg tgttagaggt tctcagtacg ttaggaaaac gctaagacca
1351 ggtcatatta gcgtcaatcg ttcccaccga ttgcaagaaa tgcctcccat
1401 gcgagaggat ttcagtgagg aagatagtag tagtagtaat gataatacat
1451 atgaaacgga caattctccc ttgactattc accttgtaaa agcaggtgac
1501 gaggagaatc atacaacaga tcgatcggac gatgttgaac ccacacttca
1551 tgatgctgat gtcatgaagt tctccgggtt tgttggagcc aaagataggt
1601 ttacgttgca gggcgctgat ccaatcggcc ctggtgacag atctgtccgt
1651 cgcttcagac cgtctgccac attgaagtca gcgttccatt cgggaccgac
1701 tcctgatgag ttgtacaatg ctggtgctga acaagcggat cacgacttcg
1751 aacactttgt ctcccgaggc aaagagaagc tacaggatga agatccaatg
1801 gccaaactcg aaagagaggc tgaggattta aaacctgata gtgacaacga
1851 agataacgat tatgatcgaa ccgctcctgt gttcaaccca gcagatggtg
1901 acccctggtc tggcattaaa attaagccta gattaaaaga tcaggatatg
1951 aggtctacct tgagcactgg caccttaaaa ggtggttcac tgaaaccgaa
2001 gaaagaacca accccaaggt ttgaaccagc gccaaaatcc gttttagata
2051 ggattagacg taggcaagtt taa