Sequence of DPV Soybean yellow mottle mosaic virus
Soybean yellow mottle mosaic virus from South Korea, complete genome.
ACC No: FJ457015
Dated: 2009-10-10 | Length: 4009 | CRC: 2080842355
ID FJ457015; SV 1; linear; genomic RNA; STD; VRL; 4009 BP.
XX
AC FJ457015;
XX
DT 16-DEC-2008 (Rel. 98, Created)
DT 10-OCT-2009 (Rel. 102, Last updated, Version 2)
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DE Soybean yellow mottle mosaic virus from South Korea, complete genome.
XX
KW .
XX
OS Soybean yellow mottle mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4009
RX PUBMED; 19701603.
RA Nam M., Kim S.M., Domier L.L., Koh S., Moon J.K., Choi H.S., Kim H.G.,
RA Moon J.S., Lee S.H.;
RT "Nucleotide sequence and genomic organization of a newly identified member
RT of the genus Carmovirus, soybean yellow mottle mosaic virus, from soybean";
RL Arch. Virol. 154(10):1679-1684(2009).
XX
RN [2]
RP 1-4009
RA Nam M., Kim S.M., Domier L.L., Kim Y.T., Moon J.K., Choi H.S., Kim H.G.,
RA Koh S., Moon J.S., Lee S.H.;
RT ;
RL Submitted (12-NOV-2008) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Microbiology Division, National Academy of Agricultural
RL Science, RDA, Suinro, 150th, Suwon, Gyeonggi-do 441-707, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .4009
FT /organism="Soybean yellow mottle mosaic virus"
FT /host="Glycine max (soybean)"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Jul-2008"
FT /db_xref="taxon:578361"
FT CDS 40. .2280
FT /codon_start=1
FT /transl_except=(pos:721. .723,aa:OTHER)
FT /product="P84 protein"
FT /note="replicase protein; ORF1 and ORF2"
FT /db_xref="GOA:B7U995"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:B7U995"
FT /protein_id="ACJ68411.1"
FT /translation="MMIQFGTMPPVRIDGPPRAFSMGMALRAVGKFLVNCCSAFGDNWA
FT DSITRNRTQHVCALQYFGDLPIECIVKSTGDFAREPANVTREVGNEKRVVNRHAKGYFL
FT SEMVASCRLHFNGIPRSTEANLLGVRRYLATYCQEHRLTNQQTLKLVDVATPLVMTANH
FT QDVVSMKLMNDPLLNLYRTLHLEAQVVHTPLRQLVARPFSGTAWSQWIDSVRGYRDPRG
FT FRLAQXGCLRRVPGFNTKISRGDHPDMLITPRNGCHKVRYMGQVLGMSNGKHFGVHNSS
FT LTNLRRGLIERVFYVEGPKGLQPPPKPEPGIFQESLHGFKRKLMHVVGTHSRIGHDEFV
FT SLYHGRRRTIYQQAVDSLSVRSVERKDAYLSTFIKAEKIPLWKKPDPAPRVIQPRNPRY
FT NVEVGCYLRKFEHHLYRGINSIMGGPTVIKGYDVDQIGNIMEEAWNKFSDPVAIGFDMS
FT RFDQHVSEDALRFEHSVYLQHFNQDPNLAKLLSWQIDNKGYANLAEGKVRYKRRGCRMS
FT GDMNTALGNCLLACAITWKLMSGLKFRLLNNGDDCVVITDKSNERAVCERLKHFTRYGF
FT TCIAEKPVYELEHLEFCNLQPLNLGSHYTAVRKPTVSLSKDTFCVSGWNNDIDAANWLN
FT AIGQCGLALSAGVPVLQSYYSALIRNFPNGKWLSKNCGKLDSGFYRLALHTMGRKPVQV
FT SEVARFSFYVMTGVTPDAQVAVEKLYDNLIINRSFEPEGNAKPELDNLSSLI"
FT CDS 2280. .2486
FT /codon_start=1
FT /product="P7 protein"
FT /note="ORF3"
FT /db_xref="GOA:B7U996"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:B7U996"
FT /protein_id="ACJ68413.1"
FT /translation="MDKSPQRGRSRSRSRQTQGPKGPKPENKQIQVAHHAVDKARGKPP
FT GGDHGGDFVIVAHTVTVNINFNI"
FT CDS 2383. .2667
FT /codon_start=1
FT /product="P10 protein"
FT /note="ORF4"
FT /db_xref="UniProtKB/TrEMBL:B7U997"
FT /protein_id="ACJ68415.1"
FT /translation="MPSTRHEVNHLAVITGVILLLWHIRSQSILILIFDAIAPRVTNIT
FT SAILLAIFYCYSNSTASIPYISQPVTHSSTSKIVYIAVGTNPVAVSKHE"
FT CDS 2664. .3728
FT /codon_start=1
FT /product="P38 protein"
FT /note="ORF5; coat protein"
FT /db_xref="GOA:B7U998"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:B7U998"
FT /protein_id="ACJ68412.1"
FT /translation="MNGKMLTIAQLAKKEKTEGRRALSKNQRKRLDSADTRPLKEVSST
FT ARVSTRRVPAAISSNVSNGVPNYAVRQNKPVIQHTELWGTLMSNSTESPAYIARTLNPS
FT DPATFNWVQPLSTGYDMYRLINCEIIYTPRCATTTTGSIVLAHDPDASDANPDNVTDLL
FT NMAGAVSGSVFSPLRIKPNIKQLDRYVRDNSTSDPKLVDAGKILVAAYGQQASTTPFAL
FT GEVRFSYTLQLLNPQPHSTMVQRLGAAPPPGVGPTYATLRTVNGATTSSNVLTFSTAGA
FT YLITAVDATAGLGTPVTTDFGRFRVQGTSAADSPLLMFGTALKSGATITFNGPVSNVLD
FT VYVVRDSGVSDNSS"
FT CDS 2668. .3339
FT /codon_start=1
FT /product="unknown"
FT /note="ORF6"
FT /db_xref="UniProtKB/TrEMBL:B7U999"
FT /protein_id="ACJ68414.1"
FT /translation="MEKCSPLPNSPRRRKQRDEELSPRTSESDSTPLTLDPSRKSAAPL
FT ECQHEESPLPSRPMCPMEYRTTLFDKTNRSFSILSYGELLCLIALSPLLISLGHSTQVI
FT LQHSIGCNRSPQGMICTDSLIVRSSTLPGVRLPLRDRLSWRMIQTLVMLTLIMSLTCLT
FT WLALSLARSSLPSGSSQTLNSSTVMFVTILLATPSWLMLARYWLQHMDSKLQQPPSPSA
FT K"
XX
SQ Sequence 4009 BP; 1045 A; 1005 C; 1006 G; 953 T; 0 other;
fj457015 Length: 4009 10-OCT-2009 Type: N Check: 9367 ..
1 gggtaaccca gccagttatc caccatttaa tctttcagga tgatgatcca
51 attcggaaca atgccacctg tcagaattga tggacctcca cgagcttttt
101 cgatggggat ggctctcaga gcggttggga aattcttagt caactgttgc
151 tctgctttcg gcgataactg ggccgacagt atcaccagga accggactca
201 acacgtctgc gcactccaat attttgggga cctccccatt gagtgcatag
251 tgaagagcac cggggacttt gcaagggaac cagccaatgt caccagggaa
301 gtcgggaatg agaagcgtgt tgtcaatagg cacgccaaag ggtacttcct
351 aagtgagatg gtggcgagtt gccggttaca cttcaacggc attcctcgct
401 ccactgaggc caacctccta ggagttaggc gctacctggc aacatattgc
451 caggagcata ggttgaccaa ccagcagaca ttgaagttgg tcgatgttgc
501 cacccccctt gtaatgactg ccaatcatca ggatgtggtt tccatgaagt
551 tgatgaatga cccgttactt aacttgtatc ggacactaca tttggaagcc
601 caggtggtgc acaccccatt acggcaactc gtcgcccgtc ccttctctgg
651 gaccgcttgg agccagtgga tcgactccgt taggggttat agggacccga
701 gagggttccg gctcgctcaa taggggtgcc taaggcgtgt gccagggttt
751 aatactaaaa taagtcgtgg cgaccaccct gacatgctaa tcacgcctag
801 gaacggatgc cacaaggtaa ggtacatggg tcaggttttg gggatgtcca
851 acgggaagca ctttggagta cacaactcca gtctaaccaa tcttcggaga
901 ggtttgatcg agagggtgtt ctacgttgaa ggacccaaag ggctacagcc
951 cccacccaaa ccagaacccg gtatcttcca agagtcttta cacggtttca
1001 aacgcaagtt gatgcatgtg gttggtactc attccaggat cggacatgac
1051 gaatttgtgt ccttgtatca tggcaggagg aggaccatat accaacaggc
1101 ggttgattcc ctttctgtga gatctgtaga gaggaaggat gcttatttga
1151 gtactttcat caaagcagag aagatcccgc tttggaagaa gccagaccca
1201 gctccccgag taatccagcc gcgaaatcca agatacaacg tggaagtggg
1251 gtgctatttg agaaagtttg aacaccactt gtacagaggg ataaactcaa
1301 tcatgggtgg acccactgta atcaagggct atgatgtgga tcagatcggt
1351 aacataatgg aagaagcgtg gaacaaattc tcagacccgg ttgcaatcgg
1401 gtttgacatg agtcggtttg accagcatgt ttccgaggat gctttgcggt
1451 ttgaacatag tgtgtatttg cagcatttca accaagaccc taatttagca
1501 aagctgctgt catggcagat tgataacaaa ggatacgcca atctggctga
1551 agggaaagtg aggtacaaac gaagaggatg cagaatgagt ggtgacatga
1601 acaccgcctt gggcaattgt ctattggcat gtgccatcac gtggaaactc
1651 atgtctgggc tgaagttccg gttattaaac aacggtgacg attgtgttgt
1701 tataacagat aaatcgaatg agagagccgt ttgtgagaga ctgaagcact
1751 tcacccgata tggattcacg tgcatcgccg aaaagcctgt atacgaacta
1801 gagcatctcg agttctgcaa cctccaacct ttaaaccttg ggagtcacta
1851 cacagcagtg cgtaagccta cagtcagtct atcaaaggac accttctgcg
1901 tgtcaggatg gaataacgac attgatgcag caaactggtt gaatgctatt
1951 ggacagtgtg ggctcgcatt gtcagctggg gtgccagtgt tacagagcta
2001 ctattccgca ttgatccgga acttcccaaa tggtaaatgg ctttctaaga
2051 actgtgggaa attggatagt gggttttacc gcctagcgtt acatacgatg
2101 ggccggaagc cggttcaggt tagtgaggtt gctaggttct ccttctatgt
2151 gatgactggg gtcacccctg acgcccaagt ggctgtggag aaactgtatg
2201 acaacctgat tataaatcgt tcattcgaac cggagggaaa cgccaagccc
2251 gaacttgaca atttatcttc tctcatataa tggacaaatc tccccaaagg
2301 ggacgtagta gaagcaggag ccggcaaaca caagggccaa agggacctaa
2351 gccagagaac aagcagattc aagttgccca ccatgccgtc gacaaggcac
2401 gaggtaaacc acctggcggt gatcacgggg gtgattttgt tattgtggca
2451 catacggtca cagtcaatat taattttaat atttgacgca atcgccccta
2501 gggtaacaaa cataacatct gccattcttc tagccatttt ctattgctat
2551 tccaactcta ctgcaagcat tccttacatt tctcagccag taacacactc
2601 tagtacgtct aagatagttt atatagccgt tgggacaaat cctgtcgcag
2651 tcagtaagca cgaatgaatg gaaaaatgct caccattgcc caactcgcca
2701 agaaggagaa aacagaggga cgaagagctc tctccaagaa ccagcgaaag
2751 cgactcgact ccgctgacac tcgacccctc aaggaagtca gcagcaccgc
2801 tagagtgtca acacgaagag tccccgctgc catctcgtcc aatgtgtcca
2851 atggagtacc gaactacgct gttcgacaaa acaaaccggt cattcagcat
2901 actgagctat ggggaactct tatgtctaat agcactgagt cccctgctta
2951 tatcgctcgg acactcaacc caagtgatcc tgcaacattc aattgggtgc
3001 aaccgctctc cacagggtat gatatgtaca gactcattaa ttgtgagatc
3051 atctacactc ccaggtgtgc gactaccact acgggatcga ttgtcttggc
3101 gcatgatcca gacgctagtg atgctaaccc tgataatgtc actgacctgc
3151 ttaacatggc tggcgctgtc tctggctcgg tcttctctcc cctcaggatc
3201 aagccaaaca ttaaacagct cgaccgttat gttcgtgaca attctactag
3251 cgaccccaag ctggttgatg ctggcaagat attggttgca gcatatggac
3301 agcaagcttc aacaaccccc ttcgccctcg gcgaagtgag gttttcatac
3351 acgctccagc tgctcaaccc tcagccacat tcaactatgg tgcaacgact
3401 cggggctgcc ccaccccctg gggtgggccc cacttacgca accttgcgta
3451 cagttaatgg tgccaccaca tccagcaatg ttctcacatt ttcgactgct
3501 ggcgcctacc tcatcactgc cgttgacgca acagctgggc tcggaacccc
3551 ggtcaccact gattttggcc ggttccgcgt acagggcact agtgctgcgg
3601 actccccact actgatgttt ggaacagccc tcaagagtgg ggctaccatt
3651 accttcaatg ggcctgtctc caacgttttg gatgtttatg ttgtgcgcga
3701 tagcggagtt agcgacaact ctagctagag cttgtaaatt tacatctcat
3751 tgaaaacccc tcacacaatc cctctacctc gatggggcca gcgtctgtca
3801 ctgggcagca tggcgaaccg acgttctagg gtaaggttgg cacctgtgtg
3851 tttgggaccc aaaaatagag tgaaattagt gtgtgtctcc cacattcgtg
3901 ggcggttgca agagccgacg taacgtatct agccagaaat ccttcgggtg
3951 gggtggttag aaacagcaaa tcttgacctg ataggccccg ggcatgcggg
4001 gcccccccc