Sequence of DPV Torque teno zalophus virus 1
California sea lion anellovirus, complete genome.
ACC No: FJ459582
Dated: 2009-04-15 | Length: 2140 | CRC: 1131001473
ID FJ459582; SV 1; circular; genomic DNA; STD; VRL; 2140 BP.
XX
AC FJ459582;
XX
DT 03-MAR-2009 (Rel. 100, Created)
DT 15-APR-2009 (Rel. 100, Last updated, Version 2)
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DE California sea lion anellovirus, complete genome.
XX
KW .
XX
OS California sea lion anellovirus
OC Viruses; ssDNA viruses; Anelloviridae; unclassified Anelloviridae.
XX
RN [1]
RP 1-2140
RX DOI; 10.1099/vir.0.008987-0.
RX PUBMED; 19264590.
RA Ng T.F., Suedmeyer W.K., Wheeler E., Gulland F., Breitbart M.;
RT "Novel anellovirus discovered from a mortality event of captive California
RT sea lions";
RL J. Gen. Virol. 90(Pt 5):1256-1261(2009).
XX
RN [2]
RP 1-2140
RA Ng T.F.F., Suedmeyer W.K., Wheeler E., Gulland F., Breitbart M.;
RT ;
RL Submitted (10-NOV-2008) to the EMBL/GenBank/DDBJ databases.
RL College of Marine Science, University of South Florida, 140 7th Ave S,
RL Saint Petersburg, FL 33701, USA
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FH Key Location/Qualifiers
FH
FT source 1. .2140
FT /organism="California sea lion anellovirus"
FT /host="Zalophus californianus"
FT /mol_type="genomic DNA"
FT /isolation_source="lung"
FT /db_xref="taxon:602021"
FT TATA_signal 59. .64
FT CDS 225. .644
FT /codon_start=1
FT /product="Orf2"
FT /db_xref="UniProtKB/TrEMBL:C0JSK7"
FT /protein_id="ACN38866.1"
FT /translation="MEDIRTLWKVTFDLLYDNNYFPSTGMYPCFDEKEICLCLAWTLLL
FT IGFSTLLILTIQLIISVRRLNGSVNALISIKNSAGVVTGQTISPKNAISEEVQAPEMEE
FT TLQEVPLSEESPLVGAQTQKMASPTKNACGKIPSF"
FT CDS 496. .1905
FT /codon_start=1
FT /product="Orf1"
FT /db_xref="InterPro:IPR004219"
FT /db_xref="UniProtKB/TrEMBL:C0JSK8"
FT /protein_id="ACN38865.1"
FT /translation="MPFRRRFRRRRWRRPFRRYHYRRNRHWWGRRRRKWRHRRRMPAVR
FT YHPSRRHKYIVIRGIEPLGNLCTDHTPSWLRATPGRSFESAGQTLGEWEGTWGAHHHSF
FT AGLLLRAQCRFATFSGDWKSYDYIEYKGGTFYIPPQCTTFLFGIDPQFTKISKEGEKEQ
FT PNEETWLHPGWLLHQRGTHIIYSKDIKPWRRWYKLRVKPGPTWEGPYSLPNAFNFIMSQ
FT WWWSWLDFQHAFEDNTRSQICHADPQNFSLFCGQKPWWFDSTYKNTIEIPKRLVNKACN
FT AWVNRQEYMIKIGQKVTDKMLHPEDDILCGNQSQQSQKKYFQQQNPGWGPFLPLLYNGD
FT NCSLWFKYRYVFKVSGDCEYRKTPSTDLTQMVPTAPGPWNAEGDRPQIQSRSILKKSRK
FT RPLDTADILLGDTDDGILTETGLERISGPSPKDLLCGMENTPPKRVRFRQSDVLRKHKH
FT RILNLIDQLSR"
FT CDS 1508. .1996
FT /codon_start=1
FT /product="Orf3"
FT /db_xref="UniProtKB/TrEMBL:C0JSK9"
FT /protein_id="ACN38867.1"
FT /translation="METIAHSGSNTVMSLRSLETVNTEKLQVQTSHKWSQQHQDHGTQR
FT EIAHKYNLVPYSKNQEKDHLTQQTSSSETQMTGSSRRQALRELVDLVQKTSYAEWKTLH
FT QNEFDSDSQMSYESTSTESSISLISYPDEGGETPPYTPPVEEGAFTSPFLPVDCSTQI"
FT polyA_signal 1996. .2002
XX
SQ Sequence 2140 BP; 674 A; 454 C; 489 G; 523 T; 0 other;
fj459582 Length: 2140 15-APR-2009 Type: N Check: 5717 ..
1 actcattctc gcgagagaat gagtcactat gacatcaaaa ggggtggaga
51 caacacacta taaattcaag taccatgggg aatggctgag tttttgccgc
101 tccagggcca agaaaacgca gcttctggta agcaagtgtc ttggagcctg
151 ggcgggtgca ggaggccaaa ggccggatca aggggcttat cgggcagagc
201 gaccctggag cggaaaaggg ctcaatggag gatattagga cgctatggaa
251 agtaacattt gacctgttat atgataacaa ctactttcct tcaacaggta
301 tgtacccatg ttttgatgaa aaagaaatat gtctttgtct cgcatggaca
351 ttgttgctga ttggattctc aactctcctg atcttgacca tacagttaat
401 tataagcgta aggaggctga atggaagcgt aaatgctctg atctccataa
451 agaattctgc tggtgtggtg actggacaaa ccatatcacc aaaaaatgcc
501 atttcggagg aggttcaggc gccggagatg gaggagaccc ttcaggaggt
551 accactatcg gaggaatcgc cactggtggg ggcgcagacg cagaaaatgg
601 cgtcaccgac gaagaatgcc tgcggtaaga taccatcctt ctagaagaca
651 taaatatata gtaataagag gcatagaacc tttaggaaac ctatgtacag
701 atcatacacc atcctggcta agagctactc ctggtagatc ctttgaatct
751 gctggacaaa ctcttggaga atgggagggg acttgggggg ctcatcatca
801 cagttttgct ggactattat taagagcaca atgtagattt gctactttta
851 gtggagactg gaaaagctat gactatattg aatataaagg aggcaccttt
901 tacatacctc cacaatgtac aacattcctt tttggtattg atcctcaatt
951 tactaaaata tctaaagagg gagaaaaaga acagccaaat gaggaaacct
1001 ggctacatcc aggctggctt ttacatcaaa gaggcactca cataatctat
1051 tcaaaagaca taaaaccttg gagaaggtgg tataaactta gagtaaaacc
1101 tggacctact tgggaaggac catattcact tccaaatgca tttaacttta
1151 taatgtccca atggtggtgg tcttggcttg attttcaaca tgcctttgag
1201 gacaatacaa gaagtcaaat ctgtcatgca gatcctcaaa acttttctct
1251 gttttgtgga caaaaaccat ggtggtttga cagtacatac aaaaatacaa
1301 ttgaaatacc aaaaagactt gtaaataaag cctgtaatgc ctgggttaat
1351 agacaagaat atatgattaa aattggacaa aaagtaactg ataaaatgct
1401 tcatcctgaa gacgacattc tatgtgggaa tcaatctcaa caaagtcaaa
1451 aaaaatattt tcaacaacaa aatcctggtt ggggaccttt tttacctctt
1501 ctatataatg gagacaattg ctcactctgg ttcaaatacc gttatgtctt
1551 taaggtctct ggagactgtg aatacagaaa aactccaagt acagacctca
1601 cacaaatggt cccaacagca ccaggaccat ggaacgcaga gggagatcgc
1651 ccacaaatac aatctcgttc catactcaaa aaatcaagaa aaagaccact
1701 tgacacagca gacatcctcc tcggagacac agatgacggg atcctcacgg
1751 agacaggcct tgagagaatt agtggaccta gtccaaaaga cctcctatgc
1801 ggaatggaaa acactccacc aaaacgagtt cgattccgac agtcagatgt
1851 cctacgaaag cacaagcacc gaatcctcaa tctcattgat cagttatcca
1901 gatgaagggg gggagacccc cccttacacc ccccccgtag aggagggtgc
1951 cttcacttcc ccttttttgc cagttgattg cagcacccaa atttaaataa
2001 aaggaagttg tggtttaaaa atggagtctg tggttttgtg gtcggctagg
2051 gaaatcctgg gcggagccaa ggcggggcta cccttcaggg ttacttctct
2101 ttttgtgtct ggggcacgcc cctcctgagg ggggggcccc