Sequence of DPV Hop mosaic virus

Hop mosaic virus isolate CZECH triple gene block protein 3, coat protein, and nucleic acid binding protein genes, complete cds.

ACC No: FJ463807

Dated: 2010-10-15 | Length: 1455 | CRC: 140983530

                
ID   FJ463807; SV 1; linear; genomic RNA; STD; VRL; 1455 BP.
XX
AC   FJ463807;
XX
DT   29-JUL-2010 (Rel. 105, Created)
DT   15-OCT-2010 (Rel. 106, Last updated, Version 3)
XX
DE   Hop mosaic virus isolate CZECH triple gene block protein 3, coat protein,
DE   and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Hop mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
XX
RN   [1]
RP   1-1455
RX   PUBMED; 20680359.
RA   Poke F.S., Crowle D.R., Whittock S.P., Wilson C.R.;
RT   "Molecular variation of hop mosaic virus isolates";
RL   Arch. Virol. 155(10):1721-1724(2010).
XX
RN   [2]
RP   1-1455
RA   Poke F.S.;
RT   ;
RL   Submitted (14-NOV-2008) to the EMBL/GenBank/DDBJ databases.
RL   Tasmanian Institute of Agricultural Research, University of Tasmania, 13 St
RL   Johns Ave, New Town, Tasmania 7008, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1455
FT                   /organism="Hop mosaic virus"
FT                   /host="hop cultivar Sladek"
FT                   /isolate="CZECH"
FT                   /mol_type="genomic RNA"
FT                   /country="Czech Republic"
FT                   /db_xref="taxon:142843"
FT   CDS             1. .207
FT                   /codon_start=1
FT                   /product="triple gene block protein 3"
FT                   /protein_id="ACS45270.1"
FT                   /translation="MSLNLVCACVGLVCFACILVYLSSGGNSCTVVLTGESVRFQGCEV
FT                   TEEFARALSNVKSLGGCGTLGLE"
FT   CDS             224. .1147
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ACS45271.1"
FT                   /translation="MSGSTEAGKLAPEAQKPKNGGEETKLKEKVGAGESSTVSVDDYAA
FT                   GLKDLEAVREEMLEARLEKLREFMRRRRSAVQITNSGLETGRPTLALTADMRSDPANPY
FT                   CKPSLDSLLRIPPKPVSNNMATAEDIMKIYTNLEGLGVPTEHIQRVIIQAVIYCKDASS
FT                   SVYLDPRGSFEWPGGAIAADSVLAIMKKDAETLRRVCRLYAPVTWSYMLVHNQPPSDWA
FT                   AMGFQFEDRFAAFDCFDYVENAAAVQPLEGIVRRPTPREKLAHNTHKDMALRKANRNQH
FT                   FGNMDVEVTGGRSGPEIIRDYSKSSR"
FT   CDS             1147. .1455
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /protein_id="ACS45272.1"
FT                   /translation="MMHWWRVAMLLYKIMFDVCGRSSLYISVDIARRAGRPIGGGKSSY
FT                   ARKRRAIKIGRCVRCYRVSPPFYHTTRCDGLSCVPGLSLNAGVARLIKGGVTEVIPS"
XX
SQ   Sequence 1455 BP; 352 A; 310 C; 430 G; 363 T; 0 other;

fj463807 Length: 1455  15-OCT-2010  Type: N  Check: 3372  ..

       1  atgtcattaa atctggtctg cgcctgtgtc gggttggttt gcttcgcctg
      51  catattagtg tacctgagta gtggaggcaa tagttgtaca gttgtcctca
     101  cgggggaatc agtcaggttc caaggttgcg aggtcacaga agagttcgca
     151  cgtgccttgt caaacgtcaa gtcccttggg ggttgtggta ctttaggttt
     201  agagtgaata attgatcaaa ataatgtctg ggagtactga agcaggaaag
     251  cttgcccctg aggcccagaa accgaagaat ggtggggagg agactaagct
     301  caaggagaaa gtgggagctg gtgaatcctc aaccgtgagt gtagatgact
     351  acgctgccgg gctcaaagat ctggaggcgg tccgggagga aatgctagag
     401  gcgagactgg agaagctgag ggaattcatg cgcaggcggc gcagtgctgt
     451  tcaaatcacg aattctggct tggaaactgg taggccgacg ttggcactta
     501  ctgctgacat gcgctctgac ccagccaacc cttactgcaa accatctctt
     551  gattcactgc tgcgtatacc gccgaaacct gtttccaata atatggctac
     601  cgcagaggac ataatgaaaa tttatacaaa cttggagggg ctaggtgttc
     651  cgactgagca catacaaagg gtaatcattc aggcagtgat atattgcaag
     701  gatgcgagca gctctgtata tctagatccg aggggctctt ttgagtggcc
     751  tggcggggcc attgcagctg actcagtact ggctattatg aagaaggacg
     801  cagaaacact tcggagggtc tgccgattgt atgcacccgt gacgtggtct
     851  tacatgttgg tgcataacca gccaccttct gactgggcgg ccatggggtt
     901  tcagttcgag gatcgctttg ctgccttcga ctgctttgat tatgtcgaga
     951  atgcagctgc tgtacaaccg cttgagggca tcgtaaggcg gccaactcca
    1001  agggagaagt tggcgcacaa cacacacaaa gatatggccc ttcgaaaagc
    1051  taataggaac cagcattttg ggaatatgga cgtggaggtc accggcggcc
    1101  gcagtggccc agagattatc cgtgattatt ccaagtcgag taggtaatga
    1151  tgcattggtg gcgtgttgct atgttattat ataagattat gtttgatgtg
    1201  tgtggtaggt ctagtcttta cattagcgtt gacatagctc ggagggcggg
    1251  ccgtcctatt gggggcggta agtcgtccta tgcacgtaag agacgcgcaa
    1301  taaagatagg gcgatgtgtg cggtgctacc gcgtctcacc gcctttctat
    1351  catactacta gatgtgacgg tttgtcgtgt gtacctggac tctcgctaaa
    1401  tgctggcgtc gccaggctaa tcaagggtgg agtaactgag gtgatcccat
    1451  cctaa