Sequence of DPV Rio Mamore virus

Rio Mamore virus strain HTN-007 nucleocapsid protein gene, complete cds.

ACC No: FJ532244

Dated: 2010-09-22 | Length: 1926 | CRC: 1895684058

                
ID   FJ532244; SV 1; linear; viral cRNA; STD; VRL; 1926 BP.
XX
AC   FJ532244;
XX
DT   22-SEP-2010 (Rel. 106, Created)
DT   22-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Rio Mamore virus strain HTN-007 nucleocapsid protein gene, complete cds.
XX
KW   .
XX
OS   Rio Mamore virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN   [1]
RP   1-1926
RX   DOI; 10.1089/vbz.2009.0115.
RX   PUBMED; 20687859.
RA   Richter M.H., Hanson J.D., Cajimat M.N., Milazzo M.L., Fulhorst C.F.;
RT   "Geographical range of Rio Mamore virus (family Bunyaviridae, genus
RT   Hantavirus) in association with the small-eared pygmy rice rat
RT   (Oligoryzomys microtis)";
RL   Vector Borne Zoonotic Dis. 10(6):613-620(2010).
XX
RN   [2]
RP   1-1926
RA   Richter M.H., Fulhorst C.F.;
RT   ;
RL   Submitted (08-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL   Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL   Galveston, TX 77555-0609, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1926
FT                   /organism="Rio Mamore virus"
FT                   /segment="S"
FT                   /host="Oligoryzomys microtis (small-eared pygmy rice rat)"
FT                   /strain="HTN-007"
FT                   /mol_type="viral cRNA"
FT                   /country="Peru"
FT                   /isolation_source="lung cell lysate"
FT                   /collection_date="Apr-1996"
FT                   /db_xref="taxon:46920"
FT   5'UTR           1. .42
FT   CDS             43. .1329
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="ACU25552.1"
FT                   /translation="MSNLQEVQEGITIHEQQLVAARQKLKDAEKAVEVDPDDVNKSTLQ
FT                   NRRAAVSTLENKLAELKRQLADLVAAQKLASKPVDPTGLEPDDHLKEKSTLRYGNVLDV
FT                   NSIDLEEPSGQTADWKAIGAYILGFVIPIVLKALYMLSTRGRQTVKENKGTRIRFKDDS
FT                   SFEEINGIRKPKHLYVSMPTAQSTMKADEITPGRFRTIACGLFPAQIKARNIISPVMGV
FT                   IGFGFFVKDWMDRIENFLAAECPFLPKPKVQSESFMGTNRAYFINRQKQVDESKIPDIV
FT                   DLIQAAESESATLFNDIAVPHSVWVFSCAPDRCPPTALYVAGIPELGAFFSILQDMRNT
FT                   IMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLFWGKEAVNHFHLGD
FT                   DMDPELRQLAQSLIDAKVKEISNQEPLKL"
FT   3'UTR           1330. .1926
XX
SQ   Sequence 1926 BP; 603 A; 348 C; 422 G; 553 T; 0 other;

fj532244 Length: 1926  22-SEP-2010  Type: N  Check: 1069  ..

       1  tagtagtaga ctccttgaga agctactact gcatatgctg gaatgagcaa
      51  cctccaagaa gtgcaagaag gtatcacaat ccatgagcag cagcttgtag
     101  ctgctcgcca aaaacttaag gatgccgaaa aggcagtgga ggtggaccca
     151  gatgacgtta acaagagcac attacaaaac agacgggcag ctgtgtctac
     201  attggagaac aaactcgcag agctcaagag acagctggca gatctggttg
     251  cagctcaaaa gctggcttca aaaccagttg atccaacagg gcttgagcct
     301  gatgaccatt tgaaggaaaa gtcaactctc cgatatggaa atgttttgga
     351  tgtaaactcg attgatcttg aagaacccag tggacaaaca gcagattgga
     401  aggcaattgg agcatacatt ttaggatttg taataccaat cgtccttaag
     451  gccttatata tgctttcaac aagagggaga caaactgtca aggaaaataa
     501  aggaacaaga atacggttca aggatgattc ttctttcgag gaaataaatg
     551  ggatcaggaa gccaaaacat ctatatgttt ccatgccaac agcacaatcc
     601  acaatgaagg ctgatgaaat tacaccaggg agattcagga caattgcatg
     651  tggtttgttt cctgctcaga ttaaagctcg aaatatcata agtcctgtga
     701  tgggagtcat tgggtttgga ttctttgtga aggattggat ggatcggatt
     751  gagaatttcc ttgctgctga atgcccattc cttccgaaac caaaagttca
     801  gtcagagtcc ttcatgggaa caaatagggc ttacttcatc aatcgacaaa
     851  agcaggtgga tgagtcaaag atccctgata tagttgatct cattcaagca
     901  gcagagtcag agtcagctac actgttcaat gacattgctg ttccacactc
     951  tgtgtgggtt ttttcctgtg ctccagatag atgtcctcct actgcacttt
    1001  atgttgcagg gattcctgaa ctcggagctt tcttctcaat tcttcaagac
    1051  atgcgaaaca caatcatggc atcaaaatct gttggaacag ctgaagagaa
    1101  attgaagaag aaatcagcat tctaccaatc ataccttcgg aggactcagt
    1151  ctatgggaat ccaactggat caaaaaatta tcatactgta tatgctattt
    1201  tggggtaaag aggctgtaaa tcattttcat ctgggagatg acatggatcc
    1251  tgagctcagg cagctagcac aatccctgat agatgcgaag gtgaaggaga
    1301  tttcaaacca ggagcctttg aagttgtgaa aagatggtag actcaaggtg
    1351  gctttccggg gcttgtgcca acagttattc atctcaggac tattctgcac
    1401  taatcaatgt gatagtttta agtagttaga atgtgaaggg tggtgggggg
    1451  taatattata agggtgggat tgtttactta cacgggtaaa gggccatatt
    1501  aaagaattgc actataaatc atgatagcca taagaagtaa attgcactac
    1551  atagtaatat atagttttaa gttaagtttg ctttgtgatt tgatcaatga
    1601  tgctatgctg actgatcaat gactaatgaa tgtaattgag tagataagtt
    1651  tcgtttgatc ttagatttaa atagtgataa gtttagatat aggttaagaa
    1701  taggtttgat aggttaagtg taatcatata tttagacctc atagattaac
    1751  tttactaatc aattaatgtc attggatgta aattttgttc cttgcttgag
    1801  ctatgcaaca ctaacattga ttaagcacat ttctacctca tcccattacc
    1851  ctccccttta ttctacctca tttattctac ctcattagtt atttctcttg
    1901  aatgcttttc aaggagcata ctacta