Sequence of DPV Malva vein clearing virus

Malva vein clearing virus isolate NAKT-NL polyprotein gene, partial cds.

ACC No: FJ539084

Dated: 2009-01-23 | Length: 1793 | CRC: 158448471

                
ID   FJ539084; SV 1; linear; genomic RNA; STD; VRL; 1793 BP.
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AC   FJ539084;
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DT   23-JAN-2009 (Rel. 99, Created)
DT   23-JAN-2009 (Rel. 99, Last updated, Version 1)
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DE   Malva vein clearing virus isolate NAKT-NL polyprotein gene, partial cds.
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KW   .
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OS   Malva vein clearing virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
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RN   [1]
RP   1-1793
RA   Pham K.T.K., Meekes E., de Kock M.;
RT   "Molecular identification of a potyvirus causing flower breaking in
RT   Anisodontea";
RL   Unpublished.
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RN   [2]
RP   1-1793
RA   Pham K.T.K., Meekes E., de Kock M.;
RT   ;
RL   Submitted (10-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL   Applied Plant Research, Section Flower Bulbs and Nursery Stocks, Wageningen
RL   UR, Postbus 85, 2160 AB, Lisse, The Netherlands
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1793
FT                   /organism="Malva vein clearing virus"
FT                   /host="Anisodontea"
FT                   /isolate="NAKT-NL"
FT                   /mol_type="genomic RNA"
FT                   /country="Netherlands"
FT                   /collection_date="Jun-2008"
FT                   /db_xref="taxon:565624"
FT   CDS             <1. .1492
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="ACL97546.1"
FT                   /translation="ILAMKYALLSEGFKEDEHDNMCRYFVNGDDLLIAIEPKYEHVLDT
FT                   FANHFGNLGLKYDFSTRTRNKSDLWFMSHMGMKRDGVFIPKLERERIVSILEWNRSKEP
FT                   VHRLEAICASMIEAWGYDDLVHEIRKFYSWVLEQAPYNALAAEGKAPYIAETALRKLYM
FT                   DIDPTESELERYVQVLNDIEVDESLSVYHQADEKLNAGVPTPSRGDRRLGKESTPSDQQ
FT                   TQDESNARESPPNTERLNTGGEQPSAQNSGAMVSRPDKDINVGTTGIVSAPRLTRMVAK
FT                   MRVPKVKGKHAMHMGHLMTYNPVQTDLSNARATQRQFEQWFEGVRNEYGVTDEQMTVIA
FT                   NGLMVWCIENGTSPNINGVWTMMDGEEQVEYPLRPVMDHAAPTFRQIMAHFSDVAEAYI
FT                   EKRNYHGNYMPRWGRQRNIRDRSLARYCFDFYEVTTSTPIRAVEAHNQMKAAALRGETN
FT                   RLFGLDGKVTTQEENTERHTAEDVNQNLHTLLGMRGVQ"
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SQ   Sequence 1793 BP; 576 A; 341 C; 431 G; 445 T; 0 other;

fj539084 Length: 1793  23-JAN-2009  Type: N  Check: 1579  ..

       1  gattttggct atgaaatacg cattgttatc cgaaggattt aaggaagacg
      51  aacatgacaa catgtgtaga tatttcgtaa atggagatga tttgctcata
     101  gcaatagaac ccaaatacga gcatgtcctt gacacatttg caaaccattt
     151  tggaaacctc ggattaaaat acgacttttc aacacgaaca agaaataaga
     201  gcgacctgtg gttcatgtcg catatgggaa tgaaaagaga tggtgtgttt
     251  ataccaaagc ttgaacgtga aagaattgtt tcaattcttg aatggaaccg
     301  ttcaaaggaa cctgtccata gactcgaagc aatctgcgcg tcgatgattg
     351  aagcttgggg ttatgatgac cttgtccacg agatacggaa attctactca
     401  tgggtcttgg aacaagcacc gtataatgct ctagcagctg agggcaaagc
     451  accatacata gctgaaacag ctctgcgaaa attgtacatg gatatcgatc
     501  ccactgaatc agagcttgag agatatgtcc aagttttaaa cgatattgaa
     551  gttgatgaga gtctctcagt ttatcaccaa gcagatgaga aattgaatgc
     601  cggtgttcca actccatcaa gaggtgatag aagattagga aaggagagca
     651  cgccatcaga ccaacaaact caagatgagt ctaacgccag ggaatcacct
     701  ccaaacactg agagactaaa tacgggagga gagcaaccaa gcgcacagaa
     751  ctcaggagca atggtcagta gaccagacaa ggatataaat gttggtacaa
     801  caggaatcgt gtccgcacca cgattaacta gaatggttgc aaagatgaga
     851  gtgcccaagg tcaaaggaaa acatgctatg cacatggggc atcttatgac
     901  ttacaaccct gttcagacgg atttgtctaa tgcacgcgca acacagaggc
     951  aatttgagca gtggtttgaa ggagtgcgga acgaatatgg tgtcacagat
    1001  gaacagatga ctgtcatagc aaatgggttg atggtttggt gtattgaaaa
    1051  tggaacatca ccaaatatta atggggtttg gactatgatg gatggtgaag
    1101  agcaagtgga atacccacta cgaccagtaa tggatcatgc agcaccaaca
    1151  ttcagacaga taatggcaca ttttagtgac gttgccgaag cgtatatcga
    1201  aaagagaaat taccatggta attacatgcc acgctggggt aggcaacgga
    1251  acatcagaga ccgtagttta gcacgctatt gttttgactt ttatgaagtc
    1301  acaactagta cgccaattcg agcagtcgag gctcacaacc aaatgaaggc
    1351  ggctgcgtta cgcggcgaga caaacaggtt gttcggattg gatggaaagg
    1401  tcacaacaca ggaggagaac acggagagac acacagcaga ggatgtgaat
    1451  caaaatctgc acacacttct tggcatgaga ggtgttcagt gatcgtttcg
    1501  gttttagagt aacttatata gatagtactt ataggtatgt atgtaacgag
    1551  taagtacgtt tatgttttga atgacttgcc ctatacgatt catagcgaga
    1601  gcctctctcc tgagcgtatc tggtgtgcca ttagttgcgt ttactttgcc
    1651  cgtatgaggc tcccctgttg cattaaagtt taattcgtgc taataaactt
    1701  ttttgcccga atctacttgt gatgttcttt gacattaagt gagtctcaac
    1751  tcggtcaact tgcatcccag ctagcctagg acaaaaaaaa aaa