Sequence of DPV Rio Mamore virus
Rio Mamore virus strain HTN-007 segment M, complete sequence.
ACC No: FJ608550
Dated: 2010-09-22 | Length: 3694 | CRC: -888651957
ID FJ608550; SV 1; linear; viral cRNA; STD; VRL; 3694 BP.
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AC FJ608550;
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DT 22-SEP-2010 (Rel. 106, Created)
DT 22-SEP-2010 (Rel. 106, Last updated, Version 1)
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DE Rio Mamore virus strain HTN-007 segment M, complete sequence.
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KW .
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OS Rio Mamore virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
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RN [1]
RP 1-3694
RX DOI; 10.1089/vbz.2009.0115.
RX PUBMED; 20687859.
RA Richter M.H., Hanson J.D., Cajimat M.N., Milazzo M.L., Fulhorst C.F.;
RT "Geographical range of Rio Mamore virus (family Bunyaviridae, genus
RT Hantavirus) in association with the small-eared pygmy rice rat
RT (Oligoryzomys microtis)";
RL Vector Borne Zoonotic Dis. 10(6):613-620(2010).
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RN [2]
RP 1-3694
RA Richter M.H., Fulhorst C.F.;
RT ;
RL Submitted (06-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3694
FT /organism="Rio Mamore virus"
FT /segment="M"
FT /host="Oligoryzomys microtis (small-eared pygmy rice rat)"
FT /strain="HTN-007"
FT /mol_type="viral cRNA"
FT /country="Peru"
FT /isolation_source="lung cell lysate"
FT /collection_date="Apr-1996"
FT /note="PCR_primers=fwd_name: HTM91, rev_name: HTM101"
FT /db_xref="taxon:46920"
FT misc_feature 1. .51
FT /note="5' noncoding region"
FT primer_bind 1. .26
FT CDS 52. .3468
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /protein_id="ACU46022.1"
FT /translation="MEGWLLAILGVYSTLTSVLPKTIYELKMECPHTVGLGQGYIMGSV
FT ELGLLDIGKVPDIKIESSCNFDLHTTASNQKSFTQVEWRKKSETTDTTEAAATTFEAQT
FT KTANLRGTCVLAPDLYDTLKRIKKTVLCYDLICNQTQCQPTVYLIAPVITCMTIRSCMA
FT NLLTSRIQITYEKTHCVTGQLVEGQCFNPSHSLTLSQPAHTYDVVTLSVTCFFTAKKAD
FT QYKIVKTLEGIISKTGCTDNAIQGYYVCFLGTHSEPLIVPNLEDIRSAEVVSRMIVHPR
FT GEDHDPLQNAQGVLRIVGPVTAKVPSTSSADTLQGVAFAGVPMYSSLSTLVRNVDPEYV
FT FSPGIIPESNQSNCDKKTIPLTWTGYLPISGEMEKVTGCTVFCTLAGPGASCEAYSENG
FT IFNISSPTCLVNKVQRFRGSEQKVNFMCQRVDNNVVVYCNGQKKVILTKTLVIGQCIYT
FT FTSLFSLMPDVAHSLAVELCVPGLHGWATIALLSTFCFGWLLIPAITLIVLKILKVMTY
FT SCSHYTTESKFKLILEKVKVEYQKTMGSMVCDICHHECETAKELESHKQSCAEGQCPYC
FT MTITEATQSALQAHFTICKLTGRFQEALKKSLKKPEVHRGCYRTLGVFRYRSRCYVGLV
FT WGFLLTIELILWAASAETPLLESGWSDTAHGIGEIPLKTDLELDFSLPSSSSYSYRRKL
FT TNPANKEESVPFHFQMEKQVIHAEIQVLGHWMDATFNIKTAFHCYGACKKYSYPWQTAK
FT CFYEKDYQYETGWGCNPGDCPGVGTGCTACGVYLDKLKSIGKAYKVISLKYTRKVCIQL
FT GTEQVCKHIDANDCLVTPSVKVCIIGTVSKLQPSDTLLFLGPLEQGGLILKQWCTTSCA
FT FGDPGDIMSTTSGMRCPEHTGSFRKICGFATTPVCEYQGNTISGYQRLMATKDSFQSFN
FT LTDPHITTNRLEWIDPDGNTRDHVNLVLNRDVSFQDLSDNPCKVDLHTQSIEGAWGSGV
FT GFTLTCVVSLTECPSFITSIKACDLAMCYGSTVATLARGSNTVKIVGKGGHSGSAFKCC
FT HDSDCSSEGLVASAPHLERVTGFNQIDSDKVYDDGAPPCTFKCWFTKSGEWLLGILNGN
FT WIVVVVLVIILFISIILFSFLCPRRSHKKTV"
FT misc_feature 3469. .3694
FT /note="3' noncoding region"
FT primer_bind complement(3649. .3694)
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SQ Sequence 3694 BP; 1136 A; 686 C; 789 G; 1083 T; 0 other;
fj608550 Length: 3694 22-SEP-2010 Type: N Check: 8754 ..
1 tagtagtaga ctccgcaaga agaagcaaaa aatcagtaaa gtgaatttaa
51 aatggaaggg tggttgttgg ccatcctagg agtctactct actctgactt
101 ctgtcctgcc taaaacaatt tatgagttga agatggaatg cccgcataca
151 gttggtttgg ggcaaggcta tattatgggt tcagttgagt tgggtctatt
201 agacattggg aaggtcccag acattaaaat tgagagctct tgcaacttcg
251 atctccatac cactgcatca aaccaaaaga gcttcacgca agttgaatgg
301 aggaaaaaaa gcgaaacaac tgacactaca gaggctgctg ccacaacatt
351 tgaggcacag acaaaaacag caaatctaag agggacatgt gtgcttgctc
401 ctgaccttta tgacactcta aagagaatta agaaaacagt tttatgttat
451 gacttaatct gcaaccaaac acaatgtcag cctactgtct atctcattgc
501 ccctgtgatt acatgcatga caataaggag ctgcatggca aacttgctaa
551 ctagtcggat acaaatcaca tatgaaaaga ctcattgtgt tacaggtcag
601 ttagtggaag gacaatgttt taatccatca cactctttaa ctctgtccca
651 acctgcacat acatatgacg tagtaacact gtcagtaaca tgtttcttta
701 ctgcaaaaaa ggctgaccag tacaagattg taaaaacact agagggaatt
751 atcagcaaaa caggttgtac tgataatgcc attcagggtt attatgtctg
801 ttttctagga actcactcag agcccttgat agtccctaat ctggaggata
851 tacgctctgc agaagttgtt agccgtatga ttgtccatcc gcgaggtgag
901 gaccatgatc cacttcagaa tgcccaaggt gtattaagaa ttgtaggtcc
951 agtgacagct aaggttccta gtacaagttc tgcagatacc ctacagggtg
1001 tagcttttgc tggtgtccct atgtacagtt cattgtccac tctggttaga
1051 aatgttgatc ctgagtatgt attctcacca gggatcatcc cagaatcaaa
1101 tcaaagtaat tgtgataaga aaacaatccc cttaacatgg actgggtatt
1151 tgccaatatc aggagaaatg gaaaaagtta cagggtgtac tgtcttttgt
1201 actctggctg gccctggagc aagctgcgag gcttattcag aaaatggtat
1251 attcaatatt agttcaccta catgtcttgt aaataaggtg cagaggtttc
1301 gtgggtcaga acagaaggtt aatttcatgt gtcagcgtgt tgacaacaat
1351 gtggtagtat actgtaacgg gcaaaagaaa gtgatactaa caaagacatt
1401 agttattggg cagtgtatct atacattcac aagtctattt tctctgatgc
1451 ctgatgttgc tcattcactt gcagttgaat tatgtgtccc tggattgcac
1501 gggtgggcca caattgcatt gctgtcaaca ttctgttttg gctggctcct
1551 cattccggca attactttga tagtgcttaa aatcttaaaa gtgatgacat
1601 attcatgttc acattatact acagaatcaa aattcaagct gattctggag
1651 aaagttaagg ttgaatatca gaaaacaatg ggttcaatgg tctgtgatat
1701 ttgtcatcat gaatgtgaaa cagcaaaaga acttgagtca cacaaacaga
1751 gttgtgcaga agggcaatgc ccttattgca tgactataac agaagccaca
1801 cagagtgcac tgcaggccca ttttacaatc tgtaagctaa caggtaggtt
1851 tcaggaggca ttaaaaaaat ctttaaaaaa gccagaagtg catcgaggat
1901 gttaccgtac acttggagtg ttccggtata ggagcagatg ctatgtgggg
1951 ctagtatggg gatttctatt gacaattgag ttaatattat gggcagcaag
2001 tgcagaaaca cctcttttag aatcaggatg gtctgataca gcacatggta
2051 taggtgagat tcccttgaag accgacttgg aacttgattt ttcattgcca
2101 tcttcatcat cttacagcta tcgaagaaaa ttgaccaatc ctgccaataa
2151 ggaggaatca gtcccttttc atttccaaat ggagaaacaa gttattcatg
2201 ctgagataca agtattggga cattggatgg atgcaacatt taatattaaa
2251 actgcatttc actgctatgg ggcttgtaag aagtattcat atccctggca
2301 aactgcaaag tgcttttacg aaaaggacta ccagtacgag acaggttggg
2351 gttgtaaccc aggcgattgt cctggtgttg gaactggatg tactgcatgc
2401 ggggtatatc ttgataaact aaaatccatt gggaaggcat ataaggtaat
2451 ctctttaaag tatacaagga aagtctgcat ccaattagga actgagcagg
2501 tctgtaagca tatagatgca aatgattgtt tggttacacc atcagtaaaa
2551 gtgtgtatta taggcacagt atctaaactt cagccttctg acacactctt
2601 gttcttaggc cctttagaac aaggtggctt gatcctgaaa caatggtgta
2651 caacatcttg tgcatttggt gatccagggg acattatgtc cactacttca
2701 ggaatgaggt gtcctgaaca tactggttca tttagaaaaa tctgtgggtt
2751 tgcaacaact ccggtatgtg agtatcaagg taatactatt tctggatatc
2801 agagattaat ggcaacaaag gattcttttc agtcatttaa tttaacagac
2851 ccccacataa ctacaaatag actagagtgg attgatcctg acggaaatac
2901 aagagatcat gtgaaccttg tgctgaatag agatgtgtca ttccaagatt
2951 taagtgataa cccatgtaaa gtagatctac acacacaatc catagaaggt
3001 gcttggggtt caggggttgg ttttacattg acttgtgttg taagcctaac
3051 agaatgccca agcttcatta catctattaa agcttgtgac ctcgcaatgt
3101 gctatggatc aactgtagca acactggccc gtgggtccaa tacagtcaag
3151 attgtaggta aggggggaca ttcgggttct gcatttaaat gctgtcatga
3201 ctctgactgc tcatcagaag ggttggtagc atctgctcca cacctagaaa
3251 gggtgactgg gttcaatcaa atagattctg ataaagtcta tgatgatggg
3301 gcacctccat gcacgtttaa gtgttggttc actaagtctg gtgaatggct
3351 cttagggatt ctcaatggca attggatcgt agttgtagtt ctagttatta
3401 ttctctttat ctctatcata ttatttagct tcttatgccc tagacgtagc
3451 cataagaaaa ctgtctgagt atataagtga ataaatatat gtccatatca
3501 atatatcatg tttatttttt atacatataa ccgtgtatta actttaacat
3551 aagatgcttg tataaactaa tgtctgactt actaacatca cctatattac
3601 agatcatatt ttagtcaaaa aaaacaaaac cttcactctc ataaaattct
3651 atatcctttt accgaggctt ttgttcctgc ggagcatact acta