Sequence of DPV Nerine yellow stripe virus
Nerine yellow stripe virus polyprotein gene, partial cds.
ACC No: FJ618537
Dated: 2009-02-24 | Length: 1609 | CRC: -1336912964
ID FJ618537; SV 1; linear; genomic RNA; STD; VRL; 1609 BP.
XX
AC FJ618537;
XX
DT 24-FEB-2009 (Rel. 99, Created)
DT 24-FEB-2009 (Rel. 99, Last updated, Version 1)
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DE Nerine yellow stripe virus polyprotein gene, partial cds.
XX
KW .
XX
OS Nerine yellow stripe virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus; unclassified Potyvirus.
XX
RN [1]
RP 1-1609
RA Cohen D., Pearson M.N., Cowell S.J., Jones D., Blouin A., Lebas B.S.M.,
RA Shiller J.B., Clover G.R.;
RT "A survey of viruses of flower bulbs in New Zealand";
RL Unpublished.
XX
RN [2]
RP 1-1609
RA Shiller J.B., Cohen D., Pearson M.N., Cowell S.J., Jones D., Blouin A.,
RA Lebas B.S.M., Clover G.R.;
RT ;
RL Submitted (11-JAN-2009) to the EMBL/GenBank/DDBJ databases.
RL Ministry of Agriculture and Forestry, 231 Morrin Rd, St Johns, Auckland,
RL New Zealand
XX
FH Key Location/Qualifiers
FH
FT source 1. .1609
FT /organism="Nerine yellow stripe virus"
FT /host="Amaryllis sp."
FT /mol_type="genomic RNA"
FT /country="New Zealand"
FT /collection_date="03-Aug-2005"
FT /db_xref="taxon:424679"
FT CDS <1. .1418
FT /codon_start=3
FT /product="polyprotein"
FT /protein_id="ACN22472.1"
FT /translation="SGQPSTVVDNTLMVVIAMQYSLLLNGIELEQQDSVCKYFANGDDL
FT LIAIEPTYATRLYDSFACNFKQLGLNYDFSNRVLNKEELIFMSHKGVLVDGLYVPKLER
FT ERIVSILEWDKSSEPEQRLEAICAAMIEAWGYKDLLHEIRKFYAWVLEQAPYSELARNG
FT KAPYLAETALRHLYTNSETKNEELLNYIEAFQSDVSLDEEIIDVMFQSQETINAGAELA
FT RAQQAQTPATPSQDVNVGTSGQTALIQSKIFSKKLRIMKVKGKTTLDLEHLLHYKPIQE
FT DLFNTKASQQQFENWHTKVQEAYDVDDKQMGILMNGLIVWCIENGTSSELKGTWGMDFG
FT DQQVEYDIQPLIQHSQPTFRQIMRHFSKIAEAYIAMRNQEERYMPRYALQRGLTDISLA
FT RYGFDFFDTTAATPQRAREAVMQMKAAAVRGKETRLFSLDGNISANTENTERHTVEDVT
FT QDMHSLLGVRGIK"
FT 3'UTR 1419. .1609
XX
SQ Sequence 1609 BP; 525 A; 270 C; 363 G; 451 T; 0 other;
fj618537 Length: 1609 24-FEB-2009 Type: N Check: 7539 ..
1 acagcgggca gccttcaacg gtagtggata acacacttat ggtcgtcata
51 gccatgcaat attcactact gttgaatggc attgaattag agcagcaaga
101 ctctgtttgt aaatattttg ccaacggtga tgatttgctc atagctatag
151 aaccaacata tgcaactaga ttgtatgata gttttgcatg taattttaaa
201 cagttgggtt tgaactatga tttctcaaat agggttttaa ataaggaaga
251 gttgattttt atgtctcata agggtgtttt ggttgatggc ttgtatgtac
301 caaagctcga gcgtgagcga atcgtctcaa ttcttgaatg ggacaagagt
351 tcagaacctg agcaacgatt agaggcgatt tgtgctgcta tgattgaggc
401 ttggggttat aaggatttgt tgcatgaaat caggaaattc tatgcttggg
451 tcctcgagca ggctccatac tctgaattag ctcgtaatgg aaaggcacca
501 tatttggctg agacagctct aaggcatcta tatacaaatt ctgaaacaaa
551 gaatgaggag ctattaaatt acattgaagc ttttcaatct gacgttagtc
601 ttgatgagga aatcattgat gtgatgtttc aatctcaaga aactatcaat
651 gctggagctg aattagctag agcgcaacaa gcacaaacac cagcaactcc
701 aagccaggat gtgaatgtgg gaacttctgg acaaactgca ctaatacaat
751 caaagatatt ctcgaagaaa cttcgaatca tgaaggttaa aggaaaaaca
801 acacttgatc ttgaacatct tttgcattat aaaccaattc aagaggactt
851 gttcaataca aaagctagtc aacagcaatt tgagaactgg cacacaaaag
901 tgcaagaagc atatgatgtt gacgacaaac aaatgggaat tttaatgaat
951 ggattgattg tttggtgtat cgagaacgga acttcttctg aattgaaagg
1001 aacatgggga atggattttg gggatcaaca agtcgaatat gatattcaac
1051 ctttgataca gcacagccag ccaacttttc gccaaataat gagacatttt
1101 agtaagatag ctgaagcgta tatagctatg cgaaaccaag aagaacgcta
1151 tatgccaaga tatgcgcttc agaggggcct cactgatatt agcctagcac
1201 gatatggttt tgatttcttt gatacaacag cagcaactcc gcaacgggca
1251 cgggaggccg ttatgcaaat gaaagcagct gctgtgcgtg gaaaagaaac
1301 aagattattt tcacttgatg gtaatattag tgcaaacaca gaaaacactg
1351 agcgacatac tgttgaggac gtcactcagg atatgcactc acttcttggt
1401 gtgaggggta taaagtgagt aagtggggag cttcttgtat cctatagata
1451 aattaaggtc ttattttatc tatttgtatc caggaatcct gtagttttgg
1501 ctacccgtgt ggttttgtcg gttgtagtgt gattgtatca cctcaaacag
1551 cggactcaat tacacattcg gtagggaaat ctataaggag acaaaaaaaa
1601 aaaaaaaaa