Sequence of DPV Watermelon bud necrosis virus
Watermelon bud necrosis virus isolate WBNV-Wm-Som, complete genome.
ACC No: FJ694963
Dated: 2009-03-10 | Length: 4795 | CRC: -561951287
ID FJ694963; SV 1; linear; genomic RNA; STD; VRL; 4795 BP.
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AC FJ694963;
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DT 10-MAR-2009 (Rel. 100, Created)
DT 10-MAR-2009 (Rel. 100, Last updated, Version 1)
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DE Watermelon bud necrosis virus isolate WBNV-Wm-Som, complete genome.
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KW .
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OS Watermelon bud necrosis virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4795
RA Ravi K.S., Sudarsana P., Kunkalikar S.R., Rajagopalan P.A., Usha B.Z.;
RT "Watermelon bud necrosis virus - characterization of genome";
RL Unpublished.
XX
RN [2]
RP 1-4795
RA Ravi K.S., Sudarsana P., Kunkalikar S.R., Rajagopalan P.A., Usha B.Z.;
RT ;
RL Submitted (02-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Molecular Virology, Mahyco Research Center, Maharashtra Hybrid Seeds Co.
RL Ltd., Jalna-Aurangabd Road, Jalna, Maharashtra 431203, India
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FH Key Location/Qualifiers
FH
FT source 1. .4795
FT /organism="Watermelon bud necrosis virus"
FT /host="watermelon"
FT /isolate="WBNV-Wm-Som"
FT /mol_type="genomic RNA"
FT /country="India"
FT /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMvl-M-F,
FT rev_name: MhMvl-M-R"
FT /db_xref="taxon:76052"
FT 5'UTR 1. .55
FT gene 56. .976
FT /gene="NSm"
FT CDS 56. .976
FT /codon_start=1
FT /gene="NSm"
FT /product="non-structural protein"
FT /protein_id="ACN53945.1"
FT /translation="MSRFSNVRSFRSSKNSSKELVPAVKTENNKNILARNVSQKDIDTA
FT IMNKVKTLNGNQYISGGDSSVLGTYSGESEIEASSDDILSRLVIEQSAHLSNWKNDSLV
FT GNGNDKVSFTINVMPTWNSKRKFMHISRLIIWVVPTIPDTKNNVKITLIDPNKMTKEEK
FT IILSRQCSLKDPMCFIFHLNWSFPKERNTPGQCMRLNLTSDEKYAKGVSFASVMYSWVK
FT NFCDTPIASENNTCDVVPINGAKVIQSAALIEACKLMIPRGTSGKAIANQIKSLQKAAE
FT KLALESEQEEKDIDVDIEMDNLLEI"
FT gene complement(1389. .4751)
FT /gene="Gn/Gc"
FT CDS complement(1389. .4751)
FT /codon_start=1
FT /gene="Gn/Gc"
FT /product="glycoprotein"
FT /protein_id="ACN53946.1"
FT /translation="MKKYYLLVYCLSLYLLFLVSEVYLLNQVDNNDQLRRIQDRYKVDD
FT PEDLIETEEYIPAETTKLKQKKLSRILRNGETTTQSPTLSLNCDNFEKEHCMIKGVSEF
FT NAHYQIDNGEEIISCISSSSNIFDICQYEREFRKTKFKNFPVVPVLKLENKKVLEIGTK
FT FFFVDKSNNPINIDPKANLKSPTVARLSVRLSGGLQKNIKCRCHLLIKSNRDQRRYWSL
FT IKNVKNLNSRASNSFTCDPTLTSSRRLDANHFSFVGDHLALNCSRLHEELLANTLDYFP
FT RTKLLANFYLWNLVLDNSCFSMIHSNINALSICTTYRDLHIISGLSLCAIFHLMTSLRC
FT VSSDSSCAEKCVCNQERASKTHTDDCYLFNRSKVEWRKLTLIQQFQFIINTKLSTNFLV
FT LITKMILASILISYIPSSIALKQSNLCVEKCYYNLNLDSLATDKFGMADNGYETCECSI
FT GNVITETVYRSGVPMSRATALNDCVLGSELCLVSNNQAQNLFACRNGCNSLASIKNIPN
FT TKFNKFYKGKSFKGNLTSLKIANRLRDGNMDSPIESKILEEESIKEYKFYKSLKVDDVP
FT PENLMPRQSLVFSTEVDGKYRYLLEMDIKANTGSVYLLSDDAAHSPMEFMVYVKSVGVE
FT YDVRYKYSTAKIDTTVADYLVTCTGNCADCVKQKPKVGVLDFCVTPTSWWGCEELGCLA
FT INEGSICGHCTNIYDLSSLVNIYQVVESHVTAEICIKSLDGYTCKKHSDRSPIQTDYYQ
FT LDMSIDLHNDYMSTDKLFAVTKQQKILTGNIADLGDFSGSSFGHPQITIDGVPLSVPAT
FT FVSKDFYPGVVVLLGIKKVFYKAMWAFTHTVPILKSLSSIPKNVIFTLDEEYVTQLSMG
FT ERIFLVGEIDNIVIDIAQGNCFKKIPTKALFLSEVKMNLFRLCSKLLQEIDCNITYTSE
FT HYHFHQDASWIPASFKFKSIGNISRSKPKNLSRFIALKKSQTNLSSKSLRIKKNEQWTF
FT RWMSLLKLIKDTIIHFDDKSAHDEKIHHSDTSISSLWDWIKAPFNWVASFFGTFFDLVR
FT IILVITAACIGLYILSSIFRLSKTYYADRRRQKLEDAIESIESSVLLTNYTGVDQARKR
FT KSPPKGYDFSLDI"
FT 3'UTR 4752. .4795
XX
SQ Sequence 4795 BP; 1528 A; 854 C; 838 G; 1575 T; 0 other;
fj694963 Length: 4795 10-MAR-2009 Type: N Check: 1156 ..
1 agagcaatcg gtgcgccaat tactagataa atcatcaaat aattaacaag
51 aaataatgtc tcgcttttct aacgttagat ctttccgttc ttcaaagaac
101 tcaagcaaag agttggtgcc tgctgtaaaa acagaaaaca ataagaatat
151 tctagctaga aatgtttctc agaaggatat tgatactgct ataatgaaca
201 aagttaagac actgaatgga aatcagtata tttcaggagg agattctagt
251 gttttgggta cttattctgg tgaatcggaa atagaagcat cttctgacga
301 tattctatcc aggctagtta ttgagcagag cgctcactta agcaactgga
351 aaaatgattc acttgttgga aatggaaatg ataaggtgag tttcaccata
401 aatgttatgc caacatggaa cagtaagcgt aaattcatgc acatatcaag
451 acttataatt tgggttgtcc ctacaatccc tgacactaaa aacaatgtta
501 aaattacttt gattgaccca aacaaaatga ccaaagaaga gaaaataata
551 ctaagcagac aatgctcatt aaaagatcct atgtgtttta tcttccatct
601 taactggtca ttcccgaaag aaagaaacac tcctgggcag tgcatgaggc
651 ttaatctgac tagtgatgag aaatatgcaa aaggagttag ctttgcctct
701 gtcatgtatt cttgggtgaa gaacttctgc gatactccta ttgcatcaga
751 aaataacact tgtgatgttg tgcctatcaa tggagctaag gtcattcaat
801 ctgctgcatt aatcgaagca tgcaagttaa tgatacctag aggaactagt
851 gggaaagcaa tagctaatca gattaagagt ttgcagaaag ctgcagaaaa
901 gctagcttta gaatcagaac aagaagaaaa agatattgat gtcgatatag
951 agatggataa tcttcttgaa atataatatt attgatttca agtctgaatt
1001 gtgtccacca accaagctct aattacgttt gtttcaaata atttaagttt
1051 agaagtttgt gttacttata agagtgtatt atgatctgct attcgaatgt
1101 ttgtgtgttt gtgtatctat gtattgtgtt atattttatc cttagaaata
1151 agataaacaa aaactaaaca aaaaatgaaa taaataaaaa caacaaaaaa
1201 agaggaaaac aaacaaaaaa caaaaaacta tatatatata aataaacaag
1251 gcctaggcca actttggctt ttcagccttt ttttggattt tgttgtttta
1301 tattgttttt ggattttttg tctgttttaa atatatatat atatatatat
1351 attttgcaga ttaacttaca ttcaaaatta aatatctatt aaatatctaa
1401 agaaaaatca taacctttag gaggggattt cctcttcctt gcctgatcta
1451 ctcctgtgta atttgtcaaa agaacacttg attctatgga ttcgatggca
1501 tcttctaatt tttgccttct tctatctgca taatatgtct tagataatct
1551 gaaaatacta cttagaatgt acaatccgat acatgctgct gtgataacca
1601 agataatcct gactagatcg aagaaagtgc cgaagaaaga agctacccaa
1651 ttgaagggtg ccttgatcca atcccacaaa ctagagatag atgtgtcaga
1701 atgatgtatc ttttcatcat gtgcactttt atcatcaaaa tgtattattg
1751 tatctttgat caacttcagt aaactcatcc acctgaatgt ccactgctca
1801 ttcttcttga tcctcaggga tttacttgaa agatttgtct gagatttctt
1851 cagagcaata aaccttgata gattttttgg tttggaccta gaaatgttcc
1901 caattgattt gaatttaaaa gaagcaggta tccatgatgc atcttgatga
1951 aaatggtaat gttcggacgt gtaagttata ttgcaatcaa tttcctgcag
2001 caacttggag cacaacctga acaggttcat tttaacttca gacaagaaca
2051 aggctttggt ggggatcttt ttaaaacaat tcccttgggc aatatctatg
2101 actatattat caatctcccc cactaaaaaa atcctctctc ccatggacag
2151 ttgtgtaaca tattcctcgt ctaaagtgaa gataacattc tttgggatgg
2201 aagataaaga ttttagaatg ggcactgtat gtgtaaaagc ccacattgct
2251 ttataaaaaa ctttttttat ccccaacagc actacaactc cagggtaaaa
2301 atcttttgag acaaaagttg ctggaactga tagtggaaca ccatctattg
2351 tgatctgagg atgaccaaat gatgaccctg aaaaatcccc caagtcagct
2401 atgttgcctg taagaatttt ctgctgttta gtcacggcaa atagtttatc
2451 agtgctcata taatcgttgt gaagatctat ggacatgtca agttgatagt
2501 aatctgtttg gataggagat ctgtcagagt gttttttgca tgtgtatcca
2551 tctaaagatt ttatgcagat ctcagcagta acatgactct caacaacctg
2601 atagatgttg accaagcttg acaagtcata aatgtttgta cagtgtccac
2651 agatggatcc ttcgttaatt gctagacaac caagttcttc acagccccac
2701 caagaggttg gtgttacaca gaagtctaaa actcccactt taggtttttg
2751 ttttacacag tcagcacaat tccctgtgca tgtcactagg taatctgcca
2801 ctgttgtgtc aatctttgct gtggaatatt tgtacctcac atcatattca
2851 acaccaacac tttttacata aaccataaac tccatgggag aatgtgctgc
2901 atcgtcactg agtaagtaaa ctgatcccgt atttgctttt atgtccattt
2951 ccaagaggta tctatatttt ccatcaactt cagttgagaa caccaaagat
3001 tgtcttggca ttaaattctc aggaggtaca tcatcgacct ttaagctttt
3051 ataaaattta tattctttga tagattcttc ttccaggatt ttagattcaa
3101 ttgggctgtc catgttacca tccctcaatc tattagctat cttcagacta
3151 gtgagattgc ctttaaaaga tttccctttg tagaatttat taaatttggt
3201 gtttggtata ttttttatgg atgccaaaga gttgcaacca tttctgcatg
3251 caaacaaatt ttgagcctgg ttattgctca ccaaacacaa ttctgaaccc
3301 aaaacacaat cgttcaatgc tgttgctcta gacattggca caccagacct
3351 gtatactgtt tcagtgatta catttccaat agagcactca catgtctcat
3401 atccattatc tgccatccca aacttgtctg tagccaagga gtctaaattt
3451 aagttgtaat agcatttttc aacacacaag ttggattgtt taagtgcaat
3501 acttgatggt atataggata taagaataga tgccaagatc atttttgtta
3551 taagaactaa gaagttggtg cttaactttg tatttattat gaactgaaat
3601 tgctgaatca aagttaattt tctccactcg actttacttc tgttgaaaag
3651 atagcaatca tcggtgtggg tttttgatgc tctctcttga ttgcaaacac
3701 atttttctgc gcaggatgag tcagatgata cgcagcgcaa acttgtcatt
3751 aaatggaata tggcacacag tgatagccca gagatgatat gtaaatcccg
3801 atatgtcgta catatgctca gagcatttat gttcgaatga atcatggaaa
3851 agcagctatt gtccaaaacc aaattccata aatagaaatt tgcgagcaac
3901 ttggtccttg ggaaatagtc tagagtattg gctaacagtt cctcatgtaa
3951 tctactacaa ttcaaggcta gatgatcacc cacaaacgag aaatgatttg
4001 catctagtct tctgcttgaa gttaatgttg gatcacatgt gaatgaattg
4051 gatgctctcg aattaagatt ttttacattt tttataagac tccaatatct
4101 cctctgatcc ctgtttgatt tgataaggag atgacatcga cacttgatgt
4151 ttttttgcaa tcccccagat agtcgtactg agagtcgtgc cacagtaggg
4201 gactttaaat tcgctttagg gtcaatgttg atagggttgt ttgacttgtc
4251 cacgaaaaag aactttgtcc caatctctaa aacttttttg ttttccaatt
4301 ttagcacagg aaccacagga aagtttttga attttgtctt tctaaattct
4351 ctttcatatt ggcatatatc aaatatattg gaagagctac ttatgcatga
4401 aataatttct tctccattat caatctgata atgagcattg aactcactca
4451 ctccttttat catgcaatgc tccttctcaa aattgtcaca atttaagctc
4501 agagtaggag actgagttgt ggtttcacca tttcttaaaa tcctggacaa
4551 tttcttctgc ttaagcttag ttgtttcagc tggaatgtac tcctcagttt
4601 cgataaggtc ttctggatca tctactttgt atctatcttg aatccttctt
4651 aactggtcat tattatctac ctgattcaac aggtagacct cagacacgag
4701 aaagagcaaa tatagactta gacagtagac aagtagatag tatttcttca
4751 tctctatgag gtattcaaaa gtatttaatt gtgcactgat gctct