Sequence of DPV Groundnut bud necrosis virus

Peanut bud necrosis virus isolate PBNV-To-Daw nonstructural protein (NSm) gene, complete cds.

ACC No: FJ705229

Dated: 2009-03-03 | Length: 924 | CRC: -1144418380

                
ID   FJ705229; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
XX
AC   FJ705229;
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DT   03-MAR-2009 (Rel. 100, Created)
DT   03-MAR-2009 (Rel. 100, Last updated, Version 1)
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DE   Peanut bud necrosis virus isolate PBNV-To-Daw nonstructural protein (NSm)
DE   gene, complete cds.
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KW   .
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OS   Peanut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-924
RA   Ravi K.S., Kunkalikar S.R., Rajagopalan P.A., Usha B.Z.;
RT   "Peanut bud necrosis virus from India - Characterization of genome";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Ravi K.S., Kunkalikar S.R., Rajagopalan P.A., Usha B.Z.;
RT   ;
RL   Submitted (04-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Virology, Maharashtra Hybrid Seeds Co. Ltd., Aurangabad Road,
RL   Jalna, Maharashtra 431203, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Peanut bud necrosis virus"
FT                   /host="tomato"
FT                   /isolate="PBNV-To-Daw"
FT                   /mol_type="genomic RNA"
FT                   /country="India"
FT                   /collected_by="Suresh Kunkalikar"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name: MhMVL-NSm-F,
FT                   rev_name: MhMVL-NSm-R"
FT                   /db_xref="taxon:40687"
FT   gene            1. .924
FT                   /gene="NSm"
FT   CDS             1. .924
FT                   /codon_start=1
FT                   /gene="NSm"
FT                   /product="nonstructural protein"
FT                   /protein_id="ACN39189.1"
FT                   /translation="MSRFSNVLESFRPSNSSNKELVPAVKKENNRSILARNVSKKDVDS
FT                   AIMSKAKTLNGKQYVSSGDSSVLGTYSSESAVEATSDDILSRLVVEQSTHLSNWKNDSL
FT                   VGNGNDKVSFTISIMPTWNSNRKYMHVSRLIIWVGPTIPDSKNNVKASLIDPNKMTKEE
FT                   KIIISRQASLKDPMCFIFHLNWSFPKERNTPKQCMQLNLTSDEKYAKGVSFASVMYSWV
FT                   KNFCDTPIAAENNTCDVVPINRAKVIQSAALIEACKLMIPKGTGGKQISNQIKSLQKAA
FT                   ERLALEAENDDESLDVDIEMDNLLEI"
XX
SQ   Sequence 924 BP; 319 A; 169 C; 191 G; 245 T; 0 other;

fj705229 Length: 924  03-MAR-2009  Type: N  Check: 5704  ..

       1  atgtctcgct tttctaacgt tttagaatct ttccgtcctt caaacagctc
      51  aaacaaagag ctagtgcctg cagttaaaaa ggaaaacaac agaagcattt
     101  tggcaagaaa tgtttccaaa aaagatgttg acagtgctat catgagcaaa
     151  gcaaaaacat tgaatgggaa acagtatgtt tctagtggag attccagtgt
     201  actgggcaca tactccagtg agtcagctgt ggaagctact tctgatgata
     251  ttctgtccag gcttgttgtt gagcaaagta ctcatctgag taactggaaa
     301  aatgattcac tcgtaggcaa tggaaatgac aaagttagct ttaccataag
     351  cataatgcct acatggaaca gtaataggaa gtatatgcat gtttcaagac
     401  ttataatctg ggtggggcca actatccctg attcaaaaaa caatgtcaaa
     451  gcctccttaa ttgatccaaa caaaatgact aaagaggaga agataattat
     501  cagcagacag gcctcattga aggatcctat gtgttttatt ttccatctaa
     551  actggtcatt cccaaaagag agaaatactc caaaacaatg catgcagctc
     601  aacttaacca gtgatgaaaa atatgccaaa ggagtcagct ttgcctcggt
     651  catgtattca tgggttaaga acttctgcga tactcctata gctgctgaaa
     701  ataacacatg tgatgtagtt cccattaaca gagccaaggt cattcaatct
     751  gctgctctaa ttgaagcatg caaattgatg atacctaaag gaactggtgg
     801  gaaacagata tccaatcaaa tcaagagtct gcagaaagct gctgagaggc
     851  tggcattaga agctgaaaat gatgatgaga gcctagatgt cgatattgag
     901  atggataatc ttcttgaaat ataa