Sequence of DPV Soybean yellow mottle mosaic virus
Soybean yellow mottle mosaic virus strain MS1, complete genome.
ACC No: FJ707484
Dated: 2010-09-07 | Length: 4009 | CRC: 1224469911
ID FJ707484; SV 1; linear; genomic RNA; STD; VRL; 4009 BP.
XX
AC FJ707484;
XX
DT 11-MAR-2009 (Rel. 100, Created)
DT 07-SEP-2010 (Rel. 106, Last updated, Version 2)
XX
DE Soybean yellow mottle mosaic virus strain MS1, complete genome.
XX
KW .
XX
OS Soybean yellow mottle mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4009
RX AGRICOLA; IND44291600.
RX DOI; 10.1094/PDIS-93-11-1214B.
RA Li S., Moon J.S., Lee S.H., Domier L.L.;
RT "First Report of Soybean yellow mottle mosaic virus in soybean in North
RT America";
RL Plant Dis. 93(11):1214-1214(2009).
XX
RN [2]
RP 1-4009
RA Li S., Moon J.S., Lee S.H., Domier L.L.;
RT ;
RL Submitted (04-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Dept. Crop Sci., Univ of Illinois, USDA-ARS, 1102 S. Goodwin Ave., Urbana,
RL IL 61801, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4009
FT /organism="Soybean yellow mottle mosaic virus"
FT /host="Glycine max (soybean)"
FT /strain="MS1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="18-Aug-2008"
FT /note="acronym: SYMMMV"
FT /db_xref="taxon:578361"
FT CDS 40. .2667
FT /codon_start=1
FT /transl_except=(pos:721. .723,aa:OTHER)
FT /transl_except=(pos:2278. .2280,aa:OTHER)
FT /product="P82"
FT /note="replication-associated protein"
FT /db_xref="GOA:C0LF85"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:C0LF85"
FT /protein_id="ACN59473.1"
FT /translation="MMIQFGTMPPVRIDGPPRAFSMGMALRAVGKFLVNCCSAFGDNWA
FT DSITRNRTQHVCALQYFGDLPIECIVKSTGDFAREPANVTREVGNEKRVVNRHAKGYFL
FT SEMVASCRLHFNGIPRSTEANLLGVRRYLATYCQEHRLTNQQTLKLVDVATPLVMTANH
FT QDVVSMKLMNDPLLNLYRTLHLEAQVVHTPLRQLVARPFSGTAWSQWIDSVRGYRDPRG
FT FRLAQXGCLRRVPGFNTKISRGDHPDMQITPRNGCHKVRYMGQVLGMSNGKHFGVHNSS
FT LTNLRRGLIERVFYVEGPKGLQPPPKPEPGIFQESLHGFKRKLMHVVGTHSRIGHDEFV
FT SLYHGRRRTIYQQAVDSLSVRSVERKDAYLSTFIKAEKIPLWKKPDPAPRVIQPRNPRY
FT NVEVGCYLRKFEHHLYRGIDSIMGGPTVIKGYDVDQIGGIMEEAWNKFSDPVAIGFDMS
FT RFDQHVSEDALRFEHSVYLQHFNQDPNLARLLSWQIDNKGYANLAEGKVRYKRRGCRMS
FT GDMNTALGNCLLACAITWKLMSGLKFRLLNNGDDCVVITDKSNERAVCERLKHFTRYGF
FT TCIAEKPVYELEHLEFCNLQPLNLGSHYTAVRKPTVSLSKDTFCVSGWNNEIDAANWLN
FT AIGQCGLALSAGVPVLQSYYSALTRNFPNGKWLSKNCGKLDSGFYRLALHTMGRKPVQV
FT SEVARFSFYVMTGVTPDAQVAVEKLYDNLIINRSFEPEGNAKPELDNLSSLIXWTNLPK
FT GDAAEAGAGKHKGQRDLSQRISRFKLPTMPSTRHEVNHLAVITGVILLLWHIRSQSILI
FT LIFDVIAPRVTNITSAILLAIFYCYSNSTASIPYISQPVTHSSTSKIVYIAVGTNPVSV
FT SKHE"
FT CDS 40. .723
FT /codon_start=1
FT /product="P26"
FT /note="replication-associated protein"
FT /db_xref="UniProtKB/TrEMBL:C0LF86"
FT /protein_id="ACN59472.1"
FT /translation="MMIQFGTMPPVRIDGPPRAFSMGMALRAVGKFLVNCCSAFGDNWA
FT DSITRNRTQHVCALQYFGDLPIECIVKSTGDFAREPANVTREVGNEKRVVNRHAKGYFL
FT SEMVASCRLHFNGIPRSTEANLLGVRRYLATYCQEHRLTNQQTLKLVDVATPLVMTANH
FT QDVVSMKLMNDPLLNLYRTLHLEAQVVHTPLRQLVARPFSGTAWSQWIDSVRGYRDPRG
FT FRLAQ"
FT CDS 2280. .2486
FT /codon_start=1
FT /product="P7"
FT /db_xref="GOA:C0LF87"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:C0LF87"
FT /protein_id="ACN59474.1"
FT /translation="MDKSPQRGRSRSRSRQTQGPKGPKPENKQIQVAHHAVDKTRGKPP
FT GGDHGGDFVIVAHTVTVNINFNI"
FT CDS 2383. .2667
FT /codon_start=1
FT /product="P10"
FT /db_xref="UniProtKB/TrEMBL:C0LF88"
FT /protein_id="ACN59477.1"
FT /translation="MPSTRHEVNHLAVITGVILLLWHIRSQSILILIFDVIAPRVTNIT
FT SAILLAIFYCYSNSTASIPYISQPVTHSSTSKIVYIAVGTNPVSVSKHE"
FT CDS 2664. .3728
FT /codon_start=1
FT /product="coat protein"
FT /db_xref="GOA:C0LF89"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:C0LF89"
FT /protein_id="ACN59476.1"
FT /translation="MNGKMLTIAQLAKKEKTEGRRALSKNQRKRLDSADTRPLKEVSST
FT ARVSTRRVPAAISSNVSNGVPNYAVRQNKPVIQHTELWGTLMSNSTESPAYIARTLNPS
FT DPATFNWVQPLSTGYDMYRLINCEIIYTPRCATTTTGSVVLAHDPDASDANPDNVTDLL
FT NMAGAVSGSVFSPLRIKPNIKQLDRYVRDNSTSDPKLVDAGKILVAAYGQQASTTPFAL
FT GEVRFSYTLQLLNPQPHSTMVQRLGAAPPPGVGPTYATLRTVNGATTSSNVLTFSTAGA
FT YLITAVDATAGLGTPVTTDFGRFRVQGTSAADSPLLMFGTALKSGATISFSGPVSNVLD
FT VYVVRDSGVSDNSS"
FT CDS 2668. .3339
FT /codon_start=1
FT /product="P25"
FT /db_xref="UniProtKB/TrEMBL:C0LF90"
FT /protein_id="ACN59475.1"
FT /translation="MEKCSLSPNSPRRRKQRDEELSPRTSESDSTPPTLDPSRKSVAPP
FT ECQHEESPLPSRPMCPMEYRTTLFDKTNRSFSILSYGELLCLIALSPLLISLGHSTQVT
FT LQHSIGCNRSPQGMICTDSLIVRSSTLPGVRLPLRDRLSWRMIQTLVMLTLITSLTCLT
FT WLALSLARSSLPSGSSQTLNSSTVMFVTILLATPSWLMLARYWLQHMDSKLQQPPSPSV
FT K"
XX
SQ Sequence 4009 BP; 1041 A; 1017 C; 1002 G; 949 T; 0 other;
fj707484 Length: 4009 07-SEP-2010 Type: N Check: 6886 ..
1 gggtaaccca gccagttatc caccatttaa tctttcagga tgatgatcca
51 attcggaaca atgccacctg tcagaattga tggacctcca cgagcttttt
101 cgatggggat ggctctcaga gcggttggga aattcttagt caactgttgc
151 tctgctttcg gcgataactg ggccgacagc atcaccagga accggactca
201 acacgtctgc gcactccagt attttgggga cctccccatt gagtgcatag
251 tgaagagcac cggggacttt gcaagggaac cagccaatgt gaccagggaa
301 gtcggaaatg aaaagcgtgt tgtcaatagg cacgccaaag ggtacttcct
351 aagtgaaatg gtggcgagtt gccgattaca cttcaacggc attcctcgct
401 ccactgaggc caatctccta ggagttaggc gctacctagc aacatattgc
451 caggagcaca ggttgaccaa ccagcagaca ctgaagttgg tcgatgtcgc
501 cacccccctt gtaatgactg ccaatcatca ggatgtggtt tccatgaagt
551 taatgaatga cccgttactg aacttgtatc ggaccttaca tttggaagcc
601 caggtggtgc acaccccact gcgacagctt gtcgcccgtc ccttctctgg
651 gaccgcttgg agccagtgga tcgactccgt taggggttat agggacccga
701 gagggttccg gctcgctcaa taggggtgcc taaggcgtgt gccagggttt
751 aatactaaaa taagtcgtgg cgaccaccct gacatgcaga tcacgcctag
801 gaacggatgc cacaaggtaa ggtacatggg ccaggtttta gggatgtcca
851 acgggaagca ctttggagta cacaactcca gtctaaccaa ccttcggaga
901 ggtttgatcg agagggtgtt ctacgttgaa ggacccaaag ggctacagcc
951 cccacccaaa ccagagcccg gtatcttcca agagtcttta cacggtttca
1001 aacgcaagct gatgcatgtg gtcggcactc attccaggat cggacatgat
1051 gaatttgtgt ccttgtatca tggcaggagg aggaccatat accagcaggc
1101 ggttgattcc ctttctgtga gatctgtaga gaggaaggat gcttatttga
1151 gtactttcat caaagcagag aagatcccgc tttggaagaa gccagaccca
1201 gctccccgag taatccagcc gcgaaatcca agatacaacg tggaagttgg
1251 gtgctatttg agaaaatttg aacaccactt gtacagaggg atagactcaa
1301 tcatgggtgg acccactgta atcaagggct acgatgtgga ccagatcggt
1351 ggcataatgg aagaagcatg gaacaaattc tccgacccgg tcgcaatcgg
1401 gtttgacatg agtcgcttcg accaacatgt ttccgaggac gctttgcggt
1451 ttgaacatag tgtgtacttg cagcatttca accaagaccc taatttagca
1501 aggctattgt catggcagat tgacaacaaa ggatacgcca atctggctga
1551 agggaaagtg aggtacaaac gaagagggtg tagaatgagt ggtgacatga
1601 acactgcctt gggcaattgt ctattggcat gtgccatcac gtggaaactc
1651 atgtctgggc tgaagttccg gttactaaac aacggtgacg attgtgttgt
1701 tataacagat aaatcgaatg agagagccgt ttgcgaaaga ctgaagcact
1751 tcacccgata tggattcacg tgcatcgccg aaaagcccgt atacgaacta
1801 gagcatctcg agttctgcaa ccttcaacct ttgaaccttg ggagtcacta
1851 cacagcagtg cgtaagccta cagtcagtct atcaaaggac accttttgcg
1901 tgtcagggtg gaacaatgaa attgatgcag caaactggtt gaatgctatt
1951 ggacagtgtg gacttgcact gtcagccgga gtgccagtgc tacagagcta
2001 ttattccgca ttgacccgga actttccaaa tggtaaatgg ctttctaaga
2051 attgtgggaa attggatagt gggttttacc gcctagcgtt acatacgatg
2101 ggccggaagc cggttcaggt tagtgaggtt gctaggttct ccttctatgt
2151 gatgactggg gtcacccctg acgcccaggt ggctgtggag aaactgtatg
2201 acaacctgat tataaatcgt tcattcgaac cggagggtaa cgccaagccc
2251 gaacttgata atttatcttc tctcatataa tggacaaatc tccccaaagg
2301 ggacgcagca gaagcaggag ccggcaaaca caagggccaa agggacctaa
2351 gccagagaat aagcagattc aagttgccca ccatgccgtc gacaagacac
2401 gaggtaaacc acctggcggt gatcacgggg gtgattttgt tattgtggca
2451 catacggtca cagtcaatat taattttaat atttgacgta atcgccccta
2501 gggtaacaaa cataacatct gccattcttc tagccatttt ctattgctat
2551 tccaattcta ctgcaagcat tccttacatt tctcagcctg taacacactc
2601 tagcacgtct aagatagttt atatagccgt tgggacaaat cctgtttcag
2651 tcagtaagca cgaatgaatg gaaaaatgct cactatcgcc caactcgcca
2701 agaaggagaa aacagaggga cgaagagctc tctccaagaa ccagcgaaag
2751 cgactcgact ccgccgacac tcgacccctc aaggaagtca gtagcaccgc
2801 cagagtgtca acacgaagag tccccgctgc catctcgtcc aatgtgtcca
2851 atggagtacc gaactacgct gttcgacaaa acaaaccggt cattcagcat
2901 actgagttat ggggaactct tatgtctaat agcactgagt cccctgctta
2951 tatcgctcgg acactcaacc caagtgaccc tgcaacattc aattgggtgc
3001 aaccgctctc cacagggtat gatatgtaca gactcattaa ttgtgagatc
3051 atctacactc ccaggtgtgc gactaccact acgggatcgg ttgtcttggc
3101 gcatgatcca gacgctagtg atgctaaccc tgataacgtc actgacctgc
3151 ttaacatggc tggcgctgtc tctggctcgg tcttctctcc cctcaggatc
3201 aagccaaaca ttaaacagct cgaccgttat gttcgtgaca attctactag
3251 cgaccccaag ctggttgatg ctggcaagat attggttgca gcatatggac
3301 agcaagcttc aacaaccccc ttcgccctcg gtgaagtgag gttttcatac
3351 acgctccagc tgctcaaccc tcagccacat tcaactatgg tgcaacgact
3401 cggggctgcc ccacctcctg gggtcggccc cacttacgca accctgcgta
3451 cagttaatgg tgccaccaca tccagcaacg ttctcacatt ttcgactgct
3501 ggcgcctacc ttatcactgc cgttgacgct acagctgggc ttggaacccc
3551 ggtcaccact gatttcggtc ggttccgcgt acagggcact agtgctgctg
3601 actccccact actgatgttc ggcacagctc tcaagagtgg ggctaccatc
3651 tcttttagcg ggcctgtctc caacgttttg gatgtttatg ttgtgcgcga
3701 tagcggagtt agcgacaact ccagctagag cttgtaaatt tatatctttc
3751 tgaaaacccc tcacacaatc cctttacctc gatggggcca gcgtctgtca
3801 ctaggcagca tggcgaaccg acgttctagg gtaaggttgg cacctgcgtg
3851 ttagggaccc aaaaatagag tgaaattagt gtgtgtctcc cacattcgtg
3901 ggcggttgca agagccgacg taacgtatct agccagaaat ccttcgggtg
3951 gggtggttag aaacagcaaa tcttgacctg ataggccccg ggcatgcggg
4001 gcccccccc