Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate R70LUW polyprotein gene, partial cds.
ACC No: FJ795758
Dated: 2010-11-19 | Length: 4223 | CRC: 840260189
ID FJ795758; SV 1; linear; genomic RNA; STD; VRL; 4223 BP.
XX
AC FJ795758;
XX
DT 05-OCT-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
XX
DE Sweet potato feathery mottle virus isolate R70LUW polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4223
RX PUBMED; 20609081.
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT "Molecular genetic analysis of virus isolates from wild and cultivated
RT plants demonstrates that East Africa is a hotspot for the evolution and
RT diversification of Sweet potato feathery mottle virus";
RL Mol. Ecol. 19(15):3139-3156(2010).
XX
RN [2]
RP 1-4223
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (25-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .4223
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea acuminata"
FT /isolate="R70LUW"
FT /mol_type="genomic RNA"
FT /country="Uganda:Luwero"
FT /db_xref="taxon:12844"
FT CDS <1. .4002
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="UniProtKB/TrEMBL:E1U7K0"
FT /protein_id="ACY74490.1"
FT /translation="GATSCVLHQTKDALSKHLRLKGVWNKSVITQDLFILAGVFAGGLW
FT MIMAGLKESFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK
FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQEKIGE
FT ARLNAIKEDELSREKVAQNPGIHAYYVNEITNAALKVDLTPHNPLLACERHSTIAGHPE
FT YEGVLRQTGPPIKMTLTDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG
FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR
FT MPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID
FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS
FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLHGNLKAVGR
FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSKLNKEAYNKDLFKYATQ
FT IQAGDVQVDTFELAERSVVSMLTSKGFEKCSYITDPEEILKALNMKAAVGAMYSGKKKD
FT YFEGMSDHDVENHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL
FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL
FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST
FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS
FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVTILEWDRSHEPIHRLEA
FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA
FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSNERTEFKDAGADPPAPKPKNVPPPPTITE
FT ITDPEDPKQEALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF
FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY
FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM
FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ
FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .27
FT /product="cytoplasmic inclusion protein; CI"
FT mat_peptide 28. .186
FT /product="6K2 protein"
FT mat_peptide 187. .762
FT /product="VPg protein"
FT mat_peptide 763. .1491
FT /product="NIa-Pro protein"
FT mat_peptide 1492. .3054
FT /product="nuclear inclusion body; NIb"
FT mat_peptide 3055. .3999
FT /product="coat protein; CP"
FT 3'UTR 4003. .4223
XX
SQ Sequence 4223 BP; 1369 A; 771 C; 978 G; 1105 T; 0 other;
fj795758 Length: 4223 19-NOV-2010 Type: N Check: 8192 ..
1 ggagccacct cttgtgtgct tcatcaaaca aaagatgcac tctcaaagca
51 ccttcgtttg aaaggagtgt ggaataaatc agtcatcaca caggatttgt
101 tcattttagc aggggtattt gctggtggtt tgtggatgat aatggcgggg
151 ctaaaggaat catttgatca aactgtgctg caccaaggaa aagaaaagcg
201 ccaaatgcaa aagctgaagt ttaggaaagc gcgagataat aaacttggat
251 tcgaagtaca cgctgatgat ggaactatcg aacacttctt tggtagtgca
301 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcaaa
351 gaacaggaaa tttataaaca tgtacggatt tgatcccact gaatattcct
401 ttgtccgatt tgttgacccg ctaactggag ctgtgataga tgattctcca
451 tatacagata ttcttcttgt tcaggagaag attggtgagg ctcgtttgaa
501 tgccatcaaa gaagatgaac tttcaagaga gaaagttgca caaaatccag
551 gaattcatgc atactatgtc aatgaaatca caaatgctgc actcaaagtt
601 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcaccat
651 tgccggtcat cctgaatatg aaggagtttt gagacaaacc ggacccccaa
701 ttaagatgac acttactgac gtgccagtaa atcctgaaga ggcaagttta
751 gtcgggcatg agagtaagtc actattcaga ggcttaaggg attacaaccc
801 aatagcaagt gttatatgtc acctaatgaa tgaagcggat gggagaacaa
851 gcgactgctt tggaatcgga tacggtggtc tcattataac aaataggcat
901 cttttcaaaa ggaacaatgg cacattaaca attaaatctc gacatggaga
951 atttgttatc aagaacacaa cccaacttgg gatgaaacct tgtgctgaca
1001 gagacatact catcattagg atgcctaagg atatacctcc gtttccacaa
1051 cgcctgaaat ttagggttcc aaaagaaaat gaaagaatct gcttggttgg
1101 atcaaatttt caggataaat caatcacaag tacgatttct gaaaccagcg
1151 taacgtgcca tgtgccaaat tcgcattttt ggaagcactg gatcgataca
1201 aaagatggac attgtggtct tcccttagta agtactactg atggtgcttt
1251 gttgggagtg catagcctat caaatttgac gaacactcag aatttctttg
1301 catcatttcc tgagaacttt gaagtggact atttgaaaac tcctgaggca
1351 atggattgga taaagaagtg gagttataat ccagatgaaa tttgttgggg
1401 aacgctggaa ctgaagacag gacaacccgt tgccccattc aaagtgtcca
1451 aactaatcac ggacttagaa ggcatacaag tgtatgctca aacaaggtca
1501 gatagatggg ttcaagatag actacatggc aatcttaaag cagttggtcg
1551 atgtcctgca caattggtta ctaagcacgt tgtaaaggga aaatgcatgc
1601 tatttgacct atatttgcag caagatcaat ctgaaaggga gtatttcaaa
1651 cctcttatgg gagcatacgg gaaaagtaag ctcaacaaag aggcgtataa
1701 taaggatttg tttaagtatg cgacacaaat tcaggcagga gatgtgcaag
1751 tggatacgtt cgaattggcg gaaagatctg ttgtttccat gctcacatca
1801 aaaggatttg aaaagtgcag ctacatcaca gatccagagg aaattctgaa
1851 agcactgaat atgaaagctg cagtcggtgc gatgtacagt ggaaagaaga
1901 aggattactt tgaaggaatg agtgatcacg atgtagaaaa ccatcttttc
1951 cacagttgca agcgtttgtt catgggacac aaaggtcttt ggaatggatc
2001 cttgaaagct gagttgagac ctatggaaaa agtggaactt aacaaaacaa
2051 gaaccttcac agcggctcct cttgacacgt tacttggtgg taaggtgtgt
2101 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg
2151 gacggtagga ataaccaaat tctaccaagg atgggatagg cttctcacat
2201 ctctacctga gggatgggtt tattgtgacg ctgatggctc gcaatttgat
2251 agttctctct ctccatattt gattaactca gttcttaata taagaagaga
2301 atttatggag gattgggatg ttggtgatca aatgcttcgg aatttataca
2351 cagaaatagt gtacacacca atactgacac cagatggaac catagtgaag
2401 aagttcaaag gtaacaacag tggacagcca tccactgtgg ttgataatac
2451 acttatggtt gtgttagcag ttcactacac tctactgaaa ctaggaatcc
2501 aagaaagcga gtttgataaa tgctgtgtct ttttcgcaaa tggcgatgat
2551 ttattattgg caatgaggcc agatacagcc catttactgg ataagtttgg
2601 tgaatgtttt tctgaattag gactcaatta tgacttttca tcacgaacaa
2651 ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat
2701 ggaatattta ttccgaagtt ggagcctgaa aggattgtta caattcttga
2751 atgggaccgt tcacacgagc caattcaccg actggaagca atatgtgccg
2801 cgatggtgga atcatggggt tatgatgaac ttcttcatca tattaggaaa
2851 ttttatgcat gggttttgga ccaagcccca tacaatgaac tagcacggaa
2901 tggaaaagca ccatacatag ctgaaaccgc actcaaagca ctctatactg
2951 gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa
3001 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca
3051 tcaatctaat gaaagaactg aatttaaaga tgcaggagcg gaccctccag
3101 cccctaagcc taagaacgtt cctccaccac ccacaataac tgagatcact
3151 gatccagagg acccgaagca ggaagctttg aaagctgcac gagcaaaaca
3201 acccgcagtc attccagagt catatggacg agacacgagc aaagaaaggg
3251 agtcaatagt gggggcatca tcgaagggtg tgagggataa agatgtgaat
3301 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa
3351 taagaaaagg caaccaatgg tcaatggaag ggccattata aatttccagc
3401 acttgtcaac atatgaacca gagcaatttg aggttgcaaa cacccggtca
3451 actcaagaac agttccaagc atggtatgaa ggagttaaag gggattatgg
3501 tgttgacgac acaggaatgg ggatcttatt gaatggacta atggtttggt
3551 gcattgaaaa tggcacatcc ccaaatataa atggtgtgtg gacaatgatg
3601 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc
3651 agtgcctact tttaggcaga tcatgacgca cttcagtgac gttgctgaag
3701 cttacataga gatgcgaaac cgtacaaagg catacatgcc aaggtatggt
3751 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
3801 ttacgagctg cattcaacta cacctgcacg tgctaaagaa gcacatttac
3851 agatgaaggc agccgcactc aagaatgcgc gaaaccggtt gtttggttta
3901 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac
3951 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
4001 aggacatcct ctgcactgta gcttatattt atgttatctt tagtatgcct
4051 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tgaatgcata
4101 acatggtggg attatatctc ggttattgca tttgagaagt cgcctttcta
4151 ttacgtatca taagggactc ttaaaagtga ggaatacctc gtaagaaaag
4201 cctttttggt tcgtgatcga gcc