Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate MBL92a polyprotein gene, partial cds.
ACC No: FJ795774
Dated: 2010-11-19 | Length: 4223 | CRC: -645900975
ID FJ795774; SV 1; linear; genomic RNA; STD; VRL; 4223 BP.
XX
AC FJ795774;
XX
DT 05-OCT-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
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DE Sweet potato feathery mottle virus isolate MBL92a polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4223
RX PUBMED; 20609081.
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT "Molecular genetic analysis of virus isolates from wild and cultivated
RT plants demonstrates that East Africa is a hotspot for the evolution and
RT diversification of Sweet potato feathery mottle virus";
RL Mol. Ecol. 19(15):3139-3156(2010).
XX
RN [2]
RP 1-4223
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (25-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
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FH Key Location/Qualifiers
FH
FT source 1. .4223
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea batatas"
FT /isolate="MBL92a"
FT /mol_type="genomic RNA"
FT /country="Uganda:Mbale"
FT /db_xref="taxon:12844"
FT CDS <1. .4002
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="UniProtKB/TrEMBL:E1U7L6"
FT /protein_id="ACY74506.1"
FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW
FT MIMAGVKDSFDQTVLHQGKEKRQMQKLRFRKARDNKLGFEVHADDGTIEHFFGSAYTKK
FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGTVMDDSPYTDILLVQERIGE
FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE
FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLVNEADG
FT RTSDCFGIGYGGLIVTNRHLFKRNNGTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIR
FT MPKDILPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID
FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWN
FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQTRSDRWVQDRLYGNLKAVGR
FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ
FT IQAGDVQVDTFELAERSVISMLTSKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD
FT YFEGMSDHNVEDHLFHSCKRLFMGHKGLWNGSLKAELRPMEKVELNKTRTFTAAPLDTL
FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL
FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST
FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDTAHLLDKFGECFS
FT ELGLNYDFSSRTNKKEDLWFMSHCGVQRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA
FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA
FT SELSVYTRMLKEMYDDSLLQENDLEVYHQSNERTEFKDAGVNPPAPKPKDVPPPPTITE
FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF
FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY
FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM
FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ
FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .27
FT /product="cytoplasmic inclusion protein; CI"
FT mat_peptide 28. .186
FT /product="6K2 protein"
FT mat_peptide 187. .762
FT /product="VPg protein"
FT mat_peptide 763. .1491
FT /product="NIa-Pro protein"
FT mat_peptide 1492. .3054
FT /product="nuclear inclusion body; NIb"
FT mat_peptide 3055. .3999
FT /product="coat protein; CP"
XX
SQ Sequence 4223 BP; 1367 A; 766 C; 979 G; 1111 T; 0 other;
fj795774 Length: 4223 19-NOV-2010 Type: N Check: 556 ..
1 ggagccacct cttgtgtgct ccaccaaact aaggattctc tctcaaaaca
51 tcttggtctg aagggagtat ggaacaagtc agttattaca caggacttac
101 ttattctcgc aggagttttt gctggtggaa tctggatgat aatggcggga
151 gtgaaggatt catttgatca aactgtgcta catcaaggaa aagaaaagag
201 gcaaatgcaa aagctgagat tcagaaaagc acgagataac aaacttggat
251 tcgaagtgca tgctgatgat ggaacaatcg aacacttctt tggtagtgca
301 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa
351 gaatagaaaa tttataaaca tgtacggatt tgaccccact gaatattcct
401 ttgtccgatt tgttgaccca ttgactggaa ctgtgatgga tgattcccca
451 tacacagata ttctccttgt gcaggagagg attggcgagg ctcgtttgaa
501 cgccatcaaa gaagatgaac tgtcaagaga aaaagttgca caaaatccag
551 gaattcatgc atactatatc aatgaaatca caaatgctgc acttaaagtt
601 gatcttacac cgcacaatcc attacttgca tgtgaaagac atagcactat
651 tgccggtcat cctgaatatg aaggagtttt gagacaaacc ggacccccaa
701 ttaaaatgac acttaatgac gtgccagtga atcctgaaga ggcaagtttg
751 gttgggcacg aaagtaaatc attatttaga ggcttaaggg attataatcc
801 aatagctagc gtcatatgtc atctcgtgaa tgaggcagat ggaagaacaa
851 gtgactgttt cgggattgga tatggcggtc tcattgtcac caataggcat
901 ctgtttaaac gaaacaatgg gacgttgaca ataagatctc gtcacggaga
951 gtttgttatt aagaacacaa ctcaacttgg aatgaaaccc tgtgctgata
1001 gagacatact aatcattagg atgcctaagg atatactccc gttcccacaa
1051 cgcctgaaat ttagggttcc aaaagaaaat gaaagaatct gcttggttgg
1101 atcaaatttt caggataaat caatcacgag cactatttct gaaaccagcg
1151 taacgtgcca tgtgccaaac tcacattttt ggaagcactg gattgataca
1201 aaagatggac attgtggtct tcccttagta agcactactg atggtgcttt
1251 gttgggagtg catagtctat caaatttgac gaacactcag aacttctttg
1301 catcatttcc tgagaacttt gaagtggatt atttgaaaac tcctgaggca
1351 atggattgga taaagaaatg gaattataat ccagatgaaa tttgttgggg
1401 gacgttggaa ctgaagacag gacaacccgt tgccccattc aaagtgtcaa
1451 aactaatcac ggacttagaa ggcatacaag tgtacgctca aacaaggtcg
1501 gatagatggg ttcaggatag actatatggc aatcttaaag cagttggtcg
1551 atgtcctgca caattggtta ctaagcacgt tgtgaaggga aaatgtatgc
1601 tatttgacct atatttgcag caagatcaat ctgaaaggga gtatttcaag
1651 cctcttatgg gagcgtacgg gaaaagtaga cttaacaaag aggcgtataa
1701 taaggatttg ttcaaatatg cgacacaaat tcaggcagga gatgtgcaag
1751 tggatacatt cgaattggca gaaagatctg tcatttctat gctcacgtca
1801 aaaggatttg aaaagtgtaa ctacatcaca gatccagaag aaattctgaa
1851 agcactgaac atgaaggccg cagtcggtgc gatgtacagt ggaaagaaga
1901 aagattactt tgaaggaatg agcgaccaca atgtggaaga ccatcttttt
1951 catagttgca agcgtttgtt catgggacac aaaggtcttt ggaatggatc
2001 cttgaaagct gagttgagac ctatggaaaa agtggaactt aacaaaacaa
2051 gaacattcac agcggctcct cttgacacgc tacttggtgg taaggtgtgt
2101 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg
2151 gacggtagga ataaccaaat tctaccaagg atgggatagg cttctcacat
2201 ctctacctga aggatgggtt tattgtgacg ctgacggctc acaatttgat
2251 agctctctct ctccatattt gatcaattca gttcttaata taagaagaga
2301 atttatggaa gattgggatg ttggtgatca aatgcttcgg aatttataca
2351 cagaaatagt atacacacca atactaacac cagacggaac catagtgaag
2401 aagttcaaag gtaacaacag tggacagcca tctactgtgg ttgataatac
2451 acttatggtt gtgttagcag ttcactacac attgctgaaa ctaggaatcc
2501 aagaaagcga gtttgataaa tgctgtgtct ttttcgcaaa tggtgatgat
2551 ttattgttgg caatgaggcc agatacagcc catttactgg ataagtttgg
2601 cgaatgtttt tctgaattag gacttaatta tgacttttca tcacgaacaa
2651 ataagaagga ggatctatgg tttatgtcac actgtggtgt gcaacgtgat
2701 ggaatattta ttccgaagtt ggagcctgaa aggattgttt caattcttga
2751 atgggatcgt tcacacgagc caattcatcg actggaagca atatgtgccg
2801 cgatggtgga atcatggggt tatgatgaac ttcttcatca tattaggaaa
2851 ttttatgcat gggttttaga ccaagcccca tacaacgaac tagcacgaaa
2901 tgggaaggca ccatacatag ctgaaactgc actcaaagca ctctatactg
2951 gtgttcaacc taatgcctct gaattgagtg tgtatacgag aatgctcaaa
3001 gaaatgtatg atgacagtct actccaagag aatgatttgg aagtatatca
3051 tcaatctaat gagagaactg aatttaaaga tgcaggagtg aaccctccag
3101 cccctaagcc taaggacgtt cctccaccac ccacaataac tgaaatcact
3151 gatccagagg acccgaagca ggcagctttg aaagctgcac gagcaaagca
3201 acccgcggtc attccagagt catatggacg agacacgagc aaagaaaggg
3251 agtcaatagt gggagcatca tcaaagggtg tgagggataa agatgtgaat
3301 gttggcaccg ttggtacatt tgttgtgcca cgtgtcaaga tgaatgcaaa
3351 taagaaaagg caaccaatgg tcaatggaag ggccattata aatttccagc
3401 acttgtcaac atatgaacca gagcagtttg aggttgcaaa cacccggtca
3451 actcaagaac agttccaagc atggtatgaa ggagttaaag gggattatgg
3501 tgttgacgac acagggatgg ggatcttact gaatggacta atggtttggt
3551 gcattgaaaa tggcacatcc ccaaacataa atggtgtgtg gacaatgatg
3601 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc
3651 agtgcctact tttaggcaga ttatgacgca cttcagtgac gttgctgaag
3701 cttacataga gatgcgaaac cgtacaaagg catacatgcc aaggtatggt
3751 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
3801 ttacgagctg cattcaacta cacctgcacg tgctaaagaa gcacatttac
3851 agatgaaggc agccgcactt aagaatgcgc gaaatcggtt gtttggttta
3901 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac
3951 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
4001 aggacatcct ctgcactgta gcttatactt atgttatctt tagtatgcct
4051 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tgaatgcata
4101 acatggtggg attatatctc ggttattgca tttgagaagt cacctttcta
4151 ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag
4201 cctttttggt tcgtgatcga gcc