Sequence of DPV Sweet potato feathery mottle virus
Sweet potato feathery mottle virus isolate SOR6 polyprotein gene, partial cds.
ACC No: FJ795777
Dated: 2010-11-19 | Length: 4223 | CRC: -149250252
ID FJ795777; SV 1; linear; genomic RNA; STD; VRL; 4223 BP.
XX
AC FJ795777;
XX
DT 05-OCT-2010 (Rel. 106, Created)
DT 19-NOV-2010 (Rel. 106, Last updated, Version 2)
XX
DE Sweet potato feathery mottle virus isolate SOR6 polyprotein gene, partial
DE cds.
XX
KW .
XX
OS Sweet potato feathery mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-4223
RX PUBMED; 20609081.
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.;
RT "Molecular genetic analysis of virus isolates from wild and cultivated
RT plants demonstrates that East Africa is a hotspot for the evolution and
RT diversification of Sweet potato feathery mottle virus";
RL Mol. Ecol. 19(15):3139-3156(2010).
XX
RN [2]
RP 1-4223
RA Tugume A.K., Cuellar W.J., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (25-FEB-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, P.O. Box 27
RL (Latokartanonkaari 7), Helsinki FIN-00014, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .4223
FT /organism="Sweet potato feathery mottle virus"
FT /host="Ipomoea repens"
FT /isolate="SOR6"
FT /mol_type="genomic RNA"
FT /country="Uganda:Soroti"
FT /db_xref="taxon:12844"
FT CDS <1. .4002
FT /codon_start=1
FT /product="polyprotein"
FT /db_xref="UniProtKB/TrEMBL:E1U7L9"
FT /protein_id="ACY74509.1"
FT /translation="GATSCVLHQTKDSLSKHLGLKGVWNKSVITQDLLILAGVFAGGIW
FT MIMAGVKDSFDQTVLHQGKEKRQMQKLKFRKARDNKLGFEVHADDGTIEHFFGSAYTKK
FT GKQKGKVTGMGSKNRKFINMYGFDPTEYSFVRFVDPLTGAVIDDSPYTDILLVQERIGE
FT ARLNAIKEDELSREKVAQNPGIHAYYINEITNAALKVDLTPHNPLLACERHSTIAGHPE
FT YEGVLRQTGPPIKMTLNDVPVNPEEASLVGHESKSLFRGLRDYNPIASVICHLMNEADG
FT RTSDCFGIGYGGLIITNRHLFKRNNGTLTIKSRHGEFVIKNTTQLGMKPCADRDILIIR
FT MPKDIPPFPPPIKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWID
FT TKDGHCGLPLVSTTDGALLGVHSLSNLTNTQNFFASFPENFEVDYLKTPEAMDWIKKWS
FT YNPDEICWGTLELKTGQPVAPFKVSKLITDLEGIQVYAQARSDRWVRDRLYGNLKAVGQ
FT CPAQLVTKHVVKGKCMLFDLYLQQDQSEREYFKPLMGAYGKSRLNKEAYNKDLFKYATQ
FT IQAGDVQVDTFELAERSVISMLTLKGFEKCNYITDPEEILKALNMKAAVGAMYSGKKKD
FT YFEGMSDQDVEDHLFHSCKRLFMGHKGLWNGSLKAELRPLEKVELNKTRTFTAAPLDTL
FT LGGKVCVDDFNNMFYNHHLKCPWTVGITKFYQGWDRLLTSLPEGWVYCDADGSQFDSSL
FT SPYLINSVLNIRREFMEDWDVGDQMLRNLYTEIVYTPILTPDGTIVKKFKGNNSGQPST
FT VVDNTLMVVLAVHYTLLKLGIQESEFDKCCVFFANGDDLLLAMRPDIAHLLDKFGECFS
FT ELGLNYDFSSRTNKKEDLWFMSHCGVKRDGIFIPKLEPERIVSILEWDRSHEPIHRLEA
FT ICAAMVESWGYDELLHHIRKFYAWVLDQAPYNELARNGKAPYIAETALKALYTGVQPNA
FT SELSAYTRVLKEMYDDSMLQENDLEVYHQSDERTEFKDAGADPPVPKPKNVPPPPTITE
FT ITDPEDPKQAALKAARAKQPAVIPESYGRDTSKERESIVGASSKGVRDKDVNVGTVGTF
FT VVPRVKMNANKKRQPMVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDY
FT GVDDTGMGILLNGLMVWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIM
FT THFSDVAEAYIEMRNRTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQ
FT MKAAALKNARNRLFGLDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
FT mat_peptide <1. .27
FT /product="cytoplasmic inclusion protein; CI"
FT mat_peptide 28. .186
FT /product="6K2 protein"
FT mat_peptide 187. .762
FT /product="VPg protein"
FT mat_peptide 763. .1491
FT /product="NIa-Pro protein"
FT mat_peptide 1492. .3054
FT /product="nuclear inclusion body; NIb"
FT mat_peptide 3055. .3999
FT /product="coat protein; CP"
XX
SQ Sequence 4223 BP; 1357 A; 765 C; 989 G; 1112 T; 0 other;
fj795777 Length: 4223 19-NOV-2010 Type: N Check: 8336 ..
1 ggagccacct cttgtgtgct ccatcaaact aaggattctc tctcaaaaca
51 tcttggtctg aagggagtat ggaacaagtc agttattaca caggacctac
101 ttattctcgc aggagtattt gctggtggaa tctggatgat aatggcggga
151 gtgaaggatt catttgatca aactgtgcta catcaaggaa aagaaaagag
201 gcaaatgcaa aagctgaaat tcagaaaggc acgagataac aaacttggat
251 tcgaagtgca tgctgatgat ggaacaatcg aacacttctt tggtagtgca
301 tacaccaaga aagggaaaca aaaaggaaag gttactggaa tgggatcgaa
351 gaatagaaaa tttataaaca tgtacggatt tgatcccact gaatattcct
401 ttgtccgatt tgttgaccca ttgactggag ctgtgataga tgattcccca
451 tacacagata ttctccttgt tcaggagagg attggtgagg ctcgtttgaa
501 tgccatcaaa gaagatgaac tttcaagaga aaaagttgca caaaatccag
551 gaattcatgc atactatatc aatgaaatca caaatgctgc actcaaagtt
601 gatcttacac cgcacaatcc actacttgca tgtgaaagac atagcaccat
651 tgctggtcat cctgaatatg aaggagtttt gagacaaacc ggacccccaa
701 ttaagatgac acttaatgac gtgccagtga atcctgaaga ggcaagtttg
751 gttgggcatg agagtaaatc actattcaga ggcttaaggg attacaatcc
801 aatagcaagt gttatatgtc acctaatgaa tgaagcggat gggagaacaa
851 gcgactgctt tggaatcgga tacggtggtc tcattataac aaataggcat
901 cttttcaaaa ggaataatgg cacattaaca attaaatctc gacatggaga
951 atttgttatc aagaacacaa cccaacttgg gatgaaacct tgtgctgaca
1001 gagacatact catcattagg atgcctaaag atatacctcc gtttccacca
1051 ccaatcaagt ttagggttcc caaggagaac gaaagaattt gcttggttgg
1101 gtcaaatttt caagacaaat caattacaag cacgatctct gaaactagtg
1151 taacgtgtca tgtgccaaac tcgcattttt ggaagcactg gatcgataca
1201 aaagatggac attgtggtct tcccttagta agcactactg atggtgctct
1251 gttgggagtg catagtctat caaatttgac gaacactcag aacttctttg
1301 catcatttcc tgagaacttt gaagtggatt atttgaaaac tcctgaggca
1351 atggattgga taaagaaatg gagttataat ccagatgaaa tttgttgggg
1401 aacgctggaa ctgaagacag ggcaacccgt tgccccattc aaagtgtcca
1451 aactaatcac ggacttagaa ggcatacaag tgtatgctca agcaaggtcg
1501 gatagatggg ttcgagatag gctatatggc aatctcaaag cagttggtca
1551 gtgtcctgca caactggtta ctaagcacgt tgtgaaggga aaatgcatgc
1601 tatttgacct atatttgcag caagatcaat ctgaaaggga gtatttcaag
1651 cctcttatgg gagcatacgg gaaaagtaga ctcaacaaag aggcgtataa
1701 taaggatttg ttcaaatatg cgacacaaat tcaggcagga gatgtgcaag
1751 tggatacatt tgaattggcg gaaagatctg tcatttctat gctcacgtta
1801 aaaggatttg aaaagtgcaa ctacatcaca gatccagagg aaattctgaa
1851 agcactgaac atgaaggctg cagtcggcgc gatgtacagt ggaaagaaga
1901 aggattactt tgaaggaatg agcgatcagg atgtggaaga ccatcttttt
1951 catagttgca agcgtttgtt catgggacac aaaggtcttt ggaatggatc
2001 tttgaaagct gagttgagac ctttggaaaa agtggaactt aacaaaacaa
2051 gaaccttcac agcggctcct cttgacacgc tgcttggtgg taaggtgtgt
2101 gtagacgatt tcaataacat gttttacaac caccatttaa aatgtccatg
2151 gacggtagga ataaccaaat tttaccaagg atgggatagg cttctcacat
2201 ctctacctga aggatgggtt tattgtgacg ctgatggctc acaatttgat
2251 agttctctct ctccatattt gattaattca gttcttaata taagaagaga
2301 atttatggaa gattgggatg ttggtgatca aatgcttcgg aatttataca
2351 cagaaatagt gtacacacca atactgacac cagacggaac catagtgaag
2401 aagttcaaag gtaataatag tggtcagcca tcgactgtgg ttgataatac
2451 acttatggtt gtgttagcag ttcactacac attgctgaaa ctaggaatcc
2501 aagaaagcga gtttgataaa tgctgtgtct ttttcgcaaa tggtgatgat
2551 ttattgttgg caatgaggcc agatatagcc catttactgg ataagtttgg
2601 tgaatgtttt tctgaattag gactcaatta tgacttttca tcacgaacaa
2651 ataagaagga agatctatgg tttatgtcac actgtggcgt gaaacgtgat
2701 ggaatattta ttccaaagtt ggagcctgaa aggattgttt caattcttga
2751 atgggatcgt tcacacgagc caattcatcg actggaagca atatgtgccg
2801 cgatggtgga atcatggggt tatgatgaac ttcttcatca tattaggaaa
2851 ttctatgcat gggttttgga ccaagcccca tacaacgaac tagcacgaaa
2901 tgggaaggca ccatacatag ctgaaactgc actcaaagca ctctatactg
2951 gtgttcaacc taatgcctct gaattgagtg cgtatacgag agtgctcaaa
3001 gaaatgtatg atgacagtat gctccaagag aatgatttgg aagtatatca
3051 ccaatctgat gagagaactg aatttaaaga tgcaggagcg gaccctccag
3101 tccctaagcc taagaacgtt cctccaccac ccacaataac tgaaatcact
3151 gatccagagg acccgaagca ggcagctttg aaagctgcac gagcaaagca
3201 acccgcggtc attccagagt catatggacg agacacgagc aaagaaaggg
3251 agtcaatagt gggggcatca tcaaaaggtg tgagggataa ggatgtgaat
3301 gttggcaccg ttggtacatt tgttgtacca cgtgtcaaga tgaatgcaaa
3351 taagaaaagg caaccaatgg tcaatggaag ggccattata aatttccagc
3401 acttgtcaac atatgaacca gagcagtttg aggttgcaaa cacccggtca
3451 acccaagaac agttccaagc atggtatgaa ggagttaaag gggattatgg
3501 cgttgacgac acagggatgg ggattttatt gaatggacta atggtttggt
3551 gcattgaaaa tggcacatcc ccaaacataa atggtgtgtg gacaatgatg
3601 gatggtgatg aacaagtaac atatccaatt aaaccattac tggaccatgc
3651 agtgcctact tttaggcaga ttatgacgca cttcagtgac gttgctgaag
3701 cttacataga gatgcgaaac cgtacaaagg catacatgcc aaggtatggt
3751 ctacaacgta atttgactga tatgagtctt gcgcgatatg catttgattt
3801 ttacgagctg cattcaacta cacctgcacg tgctaaagaa gcacatttac
3851 agatgaaggc agctgcactc aagaatgcgc gaaatcggtt gtttggttta
3901 gacggaaacg tctctacgca agaagaagat acggagaggc acacgacaac
3951 tgatgttact agaaatatac ataacctctt aggaatgagg ggtgtgcaat
4001 aggacatcct ctgcactgta gcttatactt atgttatctt tagtatgcct
4051 ttaatttaaa ttcgtgtctt tcagtcccga aggagatggt tggatgcata
4101 acatggtggg gttatatctc ggttattgca tttgagaagt cacctttcta
4151 ttacgtatca taagggactc ttaaaagtga ggagtacctc gtaagaaaag
4201 cctttttggt tcgtgatcga gcc