Sequence of DPV Rio Mamore virus
Rio Mamore virus isolate HTN-007 segment L, complete sequence.
ACC No: FJ809772
Dated: 2010-09-22 | Length: 6563 | CRC: -1505300469
ID FJ809772; SV 1; linear; viral cRNA; STD; VRL; 6563 BP.
XX
AC FJ809772;
XX
DT 22-SEP-2010 (Rel. 106, Created)
DT 22-SEP-2010 (Rel. 106, Last updated, Version 1)
XX
DE Rio Mamore virus isolate HTN-007 segment L, complete sequence.
XX
KW .
XX
OS Rio Mamore virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-6563
RX DOI; 10.1089/vbz.2009.0115.
RX PUBMED; 20687859.
RA Richter M.H., Hanson J.D., Cajimat M.N., Milazzo M.L., Fulhorst C.F.;
RT "Geographical range of Rio Mamore virus (family Bunyaviridae, genus
RT Hantavirus) in association with the small-eared pygmy rice rat
RT (Oligoryzomys microtis)";
RL Vector Borne Zoonotic Dis. 10(6):613-620(2010).
XX
RN [2]
RP 1-6563
RA Richter M.H., Fulhorst C.F.;
RT ;
RL Submitted (05-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL Pathology, University of Texas Medical Branch, 301 University Blvd.,
RL Galveston, TX 77555-0609, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6563
FT /organism="Rio Mamore virus"
FT /segment="L"
FT /host="Oligoryzomys microtis (small-eared pygmy rice rat)"
FT /isolate="HTN-007"
FT /mol_type="viral cRNA"
FT /country="Peru"
FT /isolation_source="lung cell lysate"
FT /collection_date="Apr-1996"
FT /note="PCR_primers=fwd_name: HTL-59, rev_name: HTL-60"
FT /db_xref="taxon:46920"
FT primer_bind 1. .39
FT misc_feature 1. .35
FT /note="5' noncoding region"
FT CDS 36. .6497
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="ACX83615.1"
FT /translation="MEKYREIHQRVKDQAPGTVSALECIDLLDRLYAVRHDLVDQMIKH
FT DWSDNKDVERPIGEVLLMAGISNDIIHGMEKKIIPNSPSGQILKSFFKMTPDNFKITGN
FT LIEFVEVTVTADVARGIREKCLKYEDGLKFIEALLEIETKRGNLPQIYKITFSVVAVKT
FT DGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKHDERASLEAMFNLKFHVSGPKL
FT RFFNIPDYRPQPLCEPDIANLLQYCKNWLTEEHEFVFKEVTGTSVSQVFEQHEREHMSR
FT YSESRKPRNFLLMQLTVQGVYLPSTISSDQCDTRIGCLEISKNLPETPVQALALDVAHR
FT YLSLNEDELINYYSPKVHFSASQNVKEPGTLKIGLSQLNPTSKAVLENVGKHKSEKGIF
FT GEMIESINIGSQIQLNECSKTIEKILSNLEINIGETNTSIPVPNKTTGVDELLNKFYDN
FT EIGKYLISILRKTAAWHLGHLVRDITESLIAHSGLRRSKYWSVHAYDHGNVVLFILPSK
FT SLEVVGSYIRYFTVFKDGIGLLDHDNLDSKVEIDGVVWCYSKVMSIDLNRLLALNIAFE
FT KSLLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCISQKMKLCAIFDNLRYLIPSVT
FT SLYSGYELLIEKFFERPFKSSLDVYLYSVIKSLLISLAQNNKVRFYSKVRLLGLTVDHS
FT TVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLPEEAKIHLETVEWARKF
FT NEKESKYGDILMKEGYNIDSLIKGDVKVEQQLFCQEVVELSAQELNKYLQAKSQVLCAN
FT IMNKHWDRPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYE
FT QTKQLKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIAKVVPEEYISYGGD
FT KKILNIQHALEKALRWASGSSEITTSTGKIIRFKRKLMYVSADATKWSPGDNSAKFRRF
FT TQAIYDGLSDQKLKCCVVDALRNIYETEFFMSRKLHRYIDEMNDCSEAVRDFLSFFSGG
FT VSANVKGNWLQGNLNKCSSLFGSAISLLFREVWNCLFPELECFFEFAHHSDDALFIYGY
FT LEPEDDGTDWFLYVSHQIQAGNYHWHAVNQEMWKSMFNLHEHLLLMGSIKVSPKKTTVS
FT PTNAEFLSTFFEGCAVSIPFVKILLGSLSDLPGLGFFDDLAAAQSRCVKALDLGACPQL
FT AQLAIVLCTSKVERLYGTADGMVNSPTAFLKAKKSYVPIPLGGDGSMSIMELATAGIGM
FT ADKNILKNAYISFKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFT
FT PKSEFEFHDQFSQTYLAAWTKQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSP
FT LQLRFRMQAKQHMKVCRFDGEWVTFREVLAAADSFATTYQPSEKDLDLFNTLVSCTFSK
FT EYAWKDFLNEVRCEVVTARHVHRPKIARTFTVREKDQAIQNPITSIIGYKYAATVDEVS
FT DVLDSSFFPESLSADLQVMKEGVYRELGLDIGSPEVLKRIAPLLYKAGKSRVVIVEGNV
FT EGTAESICSYWLKSMSLIKTIKVRPKKEVLKAVSLYNQKENVGLQDDLAATRLCIEVWR
FT WCKANDQDVREWLNALYFEKQTLMDWIERFRRKGVVPTDPEIQCMGLLLFDVLGYKSVL
FT QMQANRRAYSGKQYDAYCVQTYNEETKLYEGDLRVTFNFGLDCARLEVFWSKKEYILET
FT SITQRHVLRLLMEEVSKELIRCGMRFKTEQVNQTRSLVLFKTESGFEWGKPNIPCIVYK
FT HCVLRTGLRTRQPINKEFMINIQADGFRAIAQMDIESPRFLLAHAYHTLRDVRYQAVQA
FT VGNVWFKTEQHKLFINPIVSSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNEL
FT LALINRHNILNLDGIEETSEGYSTVTSMSSRQWSEEMSLMSDDDVDDMDDFTIALDDID
FT FEQINLDEDIQHFLQDESAYVGDLLIQTEDVEVRKIRGVTKVLEPVRLIKSWVSKGLAI
FT DKVYNPIGIILMTRYMSKTYNFGTVPLALLNPYDLTELESVVKGWGETVNDRFIELDRE
FT AQLLVREKGIQPEDILPDSLFSFRHVDVLLRRLFPRDPTSIFY"
FT misc_feature 6498. .6563
FT /note="3' noncoding region"
FT primer_bind 6537. .6563
XX
SQ Sequence 6563 BP; 2128 A; 1018 C; 1428 G; 1988 T; 1 other;
fj809772 Length: 6563 22-SEP-2010 Type: N Check: 7512 ..
1 tagtagtaga ctccgggata gaaaagatca gaataatgga aaagtataga
51 gaaattcatc agagggtaaa ggaccaagct cctggcacgg tctcagcatt
101 agaatgtatt gatctcctgg atcgtctcta cgctgttcgg catgatctcg
151 tcgatcagat gattaaacat gattggtctg acaataaaga tgttgaaagg
201 ccaattggag aagtcctact catggcaggg atatcaaatg atataatcca
251 cgggatggaa aaaaagatca tccccaatag tccctcagga cagatattga
301 agagtttttt taaaatgaca cctgataatt ttaaaattac cgggaatttg
351 attgagtttg ttgaagtcac agtgactgcc gatgtggccc gaggcatcag
401 agaaaaatgt ttaaaatacg aagatggtct aaagttcatt gaagcattac
451 tagagattga gacaaaaaga ggaaacttgc cacaaattta taagataaca
501 ttttcagttg ttgctgtgaa aactgatggg tcaaatatat ccactcaatg
551 gcctagccga aggaatgatg gagttgttca acacatgagg cttgttcagg
601 cagacattaa ttatgtaagg gaacacctta taaaacatga tgagcgtgct
651 tcattagaag caatgttcaa cttaaagttt catgtgtctg ggcctaaact
701 ccgttttttt aacattccgg attatcgccc tcagcctctt tgtgaacctg
751 atattgcaaa cttgttacag tattgtaaga attggctaac agaagaacat
801 gaatttgtat ttaaggaggt cactggtaca agtgtttcac aggtttttga
851 gcagcatgaa cgagagcata tgtcaagata ttcagaatct cgaaagccta
901 gaaatttttt gttgatgcag ttaactgttc aaggtgttta tctgccctct
951 actattagtt cagaccagtg tgatacaagg atcggctgtt tagaaatatc
1001 aaaaaatcta cctgagacac cagtgcaagc actggcatta gatgttgcac
1051 ataggtactt aagtttgaat gaagatgagc tgatcaatta ctacagccca
1101 aaggttcatt tttcagcaag ccagaatgtt aaagagccag ggacactcaa
1151 aataggactt tcacaattga acccgacttc taaagcagtt ctagagaatg
1201 ttggtaaaca taagtccgaa aaaggaatat ttggtgagat gattgaaagt
1251 atcaacattg gtagtcaaat acaattaaat gaatgctcta agactataga
1301 aaagattttg tcaaatttgg aaataaatat aggggagaca aacacatcta
1351 tccctgtgcc taataagact acaggtgttg atgaattatt gaacaagttt
1401 tatgataatg aaattggaaa atatttgatc tctatattgc gaaagactgc
1451 tgcctggcat ttgggacatc ttgttcgtga cattactgaa agcttaatag
1501 cccattctgg attgaggagg tcaaagtact ggtcagtcca tgcttatgat
1551 catggaaatg ttgttctctt tatattgcct tccaaatcgc ttgaggtggt
1601 aggctcctac ataagatact tcacagtatt caaagatggt attggcttat
1651 tagatcatga taacctggat tctaaagtcg aaattgatgg tgtagtatgg
1701 tgctattcaa aagtcatgag tatcgatctg aaccggttgc tggctttaaa
1751 tattgcattt gaaaaatctc tcttagcaac tgctacatgg tttcagtact
1801 atacagaaga tcaaggccat tttcctcttc aacatgcatt gaggtctgtc
1851 ttttcatttc atttcttgtt atgtatctca caaaagatga aattgtgtgc
1901 catattcgat aatctcagat acctaatacc atctgtaaca tcattatatt
1951 ctggttatga gttgctcatt gaaaaattct ttgaacggcc tttcaaaagc
2001 tctctagatg tatatcttta ttctgttatt aagtctttac ttatcagtct
2051 tgcacagaat aataaggtta ggttttattc aaaggttaga ttactaggtc
2101 tcacagtaga tcattcaacg gtaggagcta gtggggtcta tccttcactt
2151 atgtctagag tagtgtataa gcattaccgg agtcttatct ctgaagcaac
2201 cacatgtttc tttttatttg agaaaggttt gcatgggaat ttgccagaag
2251 aagcaaagat acatttagag acagtagagt gggccagaaa gtttaatgaa
2301 aaagaaagta aatatggtga tatcttgatg aaggaaggkt ataacattga
2351 ttctctcatt aaaggtgatg ttaaggttga acagcagtta ttctgtcaag
2401 aggtagttga actaagtgca caagaattga ataagtactt gcaggcaaaa
2451 tcccaagttt tatgtgcaaa cattatgaat aaacattggg atagaccata
2501 ttttagccag acacgaaata taagcttaaa aggtatgtca ggtgcattac
2551 aggaagatgg gcatttagca gcaagtgtga cattaattga agccattcgt
2601 tttctcaata gatcacagac aaatccaaac gtaatagata tgtatgagca
2651 gacaaaacaa ttgaaagcac aagccaggat tgtgagaaaa taccaaagga
2701 cagaggctga tagaggcttt tttataacaa ctttgccaac aagagttagg
2751 ttagaaatca ttgaagatta ttatgatgca atagcaaagg tcgtccctga
2801 agaatatatt tcatatgggg gtgacaagaa aattttgaat attcagcatg
2851 ctttagagaa agctttaaga tgggcatcag ggtcatctga aataacaact
2901 agtacaggga agattatacg attcaaaagg aagcttatgt atgtgagtgc
2951 tgatgcaact aaatggtcac caggagacaa ttcagcaaaa ttcagaaggt
3001 ttactcaggc aatctatgat ggattatctg atcaaaagtt aaaatgctgt
3051 gtagtggatg cacttcggaa tatatatgaa acagagtttt tcatgtcccg
3101 taaattacat aggtatatag atgagatgaa cgattgttca gaagctgtac
3151 gtgatttttt atcttttttt tctggtggcg tgtcagcaaa tgtaaaaggt
3201 aattggctgc aagggaattt aaataaatgt tcatcattat tcggctcagc
3251 tatttccctc ctattccgag aagtgtggaa ttgcttgttt ccagagttag
3301 agtgtttttt tgaatttgca caccactcag atgatgcttt atttatttat
3351 ggttatttag aaccagaaga tgatggtact gattggtttc tgtatgtatc
3401 ccatcaaata caagcgggaa actatcactg gcatgcagta aatcaagaga
3451 tgtggaaaag catgtttaac cttcatgagc atctgctctt aatgggttca
3501 attaaggttt cacccaagaa aacaactgtt tcaccaacta atgcagaatt
3551 cctttcaaca ttctttgaag gttgtgcagt atctattcct ttcgtgaaaa
3601 ttttactggg ttctttatca gatcttcctg gacttggttt ctttgatgat
3651 ttggctgcag cacaaagtag atgtgttaaa gcattggatt taggcgcgtg
3701 tcctcagctt gcacagcttg ctatagtctt gtgtaccagt aaagtagaac
3751 gactttatgg tactgctgat ggtatggtaa attcaccaac tgcattcttg
3801 aaggcaaaga aatcatatgt cccaattcca cttggcggtg atggttctat
3851 gtcaataatg gagttagcaa ctgcagggat tgggatggct gacaaaaata
3901 tattaaaaaa tgcttatata tcatttaagc atacacgtag agatggtgat
3951 aggtatgtac tgggtttatt taagtttttg atgtcattga gcgaagatgt
4001 ttttcaacat gaccgacttg gggaatttag ttttgtgggc aaagttcaat
4051 ggaaagtatt tacaccaaag tcagaatttg agttccatga ccagttctct
4101 cagacatatt tagctgcatg gacaaagcag catccagtgt atgattatat
4151 aatcccgcgt gggagagaca atttacttgt ttatctagta agaaaactga
4201 atgatcctag tattgtcact gcaatgacta tgcagtcacc gttacaatta
4251 cgatttagga tgcaggcaaa acaacatatg aaagtttgta ggtttgatgg
4301 tgaatgggta acatttagag aggtattggc tgcagcagat agttttgcaa
4351 ctacatacca acctagtgag aaagatttgg atctgttcaa tacacttgta
4401 agttgtacat tctcaaagga atatgcttgg aaagatttct tgaatgaggt
4451 tagatgtgaa gttgtgactg caaggcatgt tcataggccc aaaattgcaa
4501 ggacattcac agttagggaa aaggatcagg caattcaaaa tccaatcaca
4551 tccattatag gctataaata tgcagcaact gtggatgagg taagtgatgt
4601 attggatagt tcattttttc ctgaatcctt gtctgctgat ctccaagtaa
4651 tgaaagaagg tgtctatcga gaattgggat tagacattgg atctcctgaa
4701 gttttaaaga gaatagcacc attgctctat aaagctggga aatcacgggt
4751 ggtcattgta gaaggtaatg tagaaggcac agctgagtct atctgtagtt
4801 attggttaaa gagtatgtct ttgataaaga caatcaaagt gaggccaaaa
4851 aaagaagtgc ttaaagcagt atccctatac aaccagaaag aaaacgtagg
4901 tttgcaagat gatctcgcag ctacaagact gtgtattgaa gtatggaggt
4951 ggtgcaaagc aaatgatcag gatgtaagag agtggctcaa tgcgttatat
5001 tttgagaagc agacattaat ggattggatt gaaagattta gaaggaaggg
5051 agttgtacca actgatcctg aaatacaatg tatgggtctg cttctgtttg
5101 atgtactagg ttataaaagt gtgcttcaga tgcaagcaaa ccgtagggcc
5151 tattcaggta agcaatatga cgcttattgt gttcaaacat acaatgaaga
5201 gactaagctg tatgagggtg atctgagggt gacatttaat tttggtcttg
5251 attgtgcacg ccttgaagta ttctggtcta agaaagaata tatactggaa
5301 acatcaataa cacagaggca cgttctcagg ttgttgatgg aggaagtttc
5351 aaaagaatta ataagatgtg gtatgaggtt caaaactgaa caggtgaacc
5401 aaacacggag tcttgtatta tttaagacag aatctgggtt cgaatggggg
5451 aagccaaaca taccatgcat cgtatataag cattgtgttt tacgaactgg
5501 gctaagaacc agacaaccca tcaataaaga gttcatgatc aatatacaag
5551 cagatgggtt tagagcaata gctcagatgg atatagaaag tcctcgattc
5601 ttgctagctc atgcatatca tacactgagg gatgtaagat atcaggcagt
5651 acaggctgta ggcaatgttt ggtttaaaac tgaacagcat aagttattca
5701 taaaccctat tgtgtcatca ggactccttg aaaattttat gaaaggcttg
5751 ccagctgcaa tacccccagc tgcctactca ttaattatga ataaggcaaa
5801 gatttctgtt gacttgttta tgttcaatga gctattagcc ttgatcaatc
5851 gccataatat attaaatctt gatgggatag aagagacatc agaaggttat
5901 agtacagtaa cttcaatgtc aagcagacaa tggtcagagg aaatgagttt
5951 aatgtcagat gatgatgtgg atgatatgga tgattttaca atagcattag
6001 atgacatcga ttttgaacaa atcaatcttg atgaagatat ccagcacttc
6051 cttcaggatg agtctgcata tgttggtgac ttgttaatac aaactgagga
6101 cgttgaggtc agaaagataa gaggtgttac aaaagtatta gagccagttc
6151 gcctaataaa gagttgggtg tcaaagggtt tagcaataga taaagtgtat
6201 aacccaatcg ggattatttt gatgactaga tatatgtcga agacatacaa
6251 ttttgggact gtgccattag ctctgttaaa tccttatgac cttacagaat
6301 tagaaagtgt tgtcaaaggt tggggtgaaa cagttaatga taggtttatt
6351 gagttggaca gagaagcaca gttacttgtt agagagaaag gtattcaacc
6401 agaagatatc ctgccagact ctttattctc attcaggcat gtagatgtac
6451 tccttagaag gttgtttcct agagacccta cttctatctt ttattaattg
6501 attgatcatc tttatttatt ctatgtgcat aatatagtgt tcttttcccg
6551 gagcatacta cta