Sequence of DPV Iris yellow spot virus

Iris yellow spot virus isolate Cip5 nucleocapsid protein gene, partial cds.

ACC No: FJ842094

Dated: 2009-05-26 | Length: 815 | CRC: 591378318

                
ID   FJ842094; SV 1; linear; viral cRNA; STD; VRL; 815 BP.
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AC   FJ842094;
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DT   26-MAY-2009 (Rel. 100, Created)
DT   26-MAY-2009 (Rel. 100, Last updated, Version 1)
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DE   Iris yellow spot virus isolate Cip5 nucleocapsid protein gene, partial cds.
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KW   .
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OS   Iris yellow spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-815
RA   Turina M., Tomassoli L., Tiberini A., Masenga V., Vicchi V.;
RT   "Characterization of Iris yellow spot virus (IYSV) isolates from the first
RT   confirmed epidemic episode on onion crops in northern Italy";
RL   Unpublished.
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RN   [2]
RP   1-815
RA   Tomassoli L., Tiberini A., Vicchi V.;
RT   ;
RL   Submitted (17-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Consiglio per la Ricerca e Sperimentazione in Agricoltura, Centro di
RL   Ricerca per la Patologia Vegetale, Via C.G. Bertero, 22, Roma, RM 00156,
RL   Italy
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FH   Key             Location/Qualifiers
FH
FT   source          1. .815
FT                   /organism="Iris yellow spot virus"
FT                   /host="Allium cepa"
FT                   /isolate="Cip5"
FT                   /mol_type="viral cRNA"
FT                   /country="Italy"
FT                   /collection_date="Jul-2008"
FT                   /db_xref="taxon:60456"
FT   CDS             1. .>815
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="ACR20678.1"
FT                   /translation="MSTAPKVKDSENEKLLSGGDADVVIESDETEGFNFKNFVVANEGI
FT                   RMTFNNGYTILRNRAGIYKAIKSGKFTFQNKPIIIPSANVSPSQDDWTFRRLEGFIRAR
FT                   MLVELLETKNGQEKQKMYEKICGLPLVSAYGLKPSDKFDATTARIMLTLGGPLTLLASL
FT                   DSFAAAALPLAYFQNVKKESLGISRFSTYEQLCKVARVMAAKEFKFTDKYKKIFDEAVK
FT                   ILTKCTPGTSGAASLVKFNEQIQILEGAFGKIVEDIGESSKPKNPQEKE"
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SQ   Sequence 815 BP; 276 A; 148 C; 178 G; 213 T; 0 other;

fj842094 Length: 815  26-MAY-2009  Type: N  Check: 1033  ..

       1  atgtctactg ccccaaaggt gaaagattca gaaaatgaga aacttctctc
      51  tggtggagat gcagatgtgg taattgaatc tgacgaaact gaaggattca
     101  atttcaagaa ctttgtggtg gcaaatgagg gtatccgaat gacattcaat
     151  aatggttaca ctattcttag aaacagagca ggtatctaca aggcaataaa
     201  atcagggaaa ttcacattcc aaaacaaacc catcattatt cctagtgcta
     251  atgtgagtcc tagccaggat gattggacat ttagaaggtt agaaggcttt
     301  atcagagcca gaatgctggt agaactactt gaaacaaaga acggacagga
     351  aaaacaaaaa atgtatgaaa aaatctgcgg gcttcctctg gtgagtgcat
     401  atggtttgaa acctagcgac aagtttgatg caaccacagc caggatcatg
     451  ctaacactag gcggtcctct caccttactg gcaagtcttg acagctttgc
     501  tgcagctgct cttccgttag cttattttca gaatgtgaaa aaagaatcac
     551  ttggtataag cagattttca acttatgagc agctttgcaa agttgcaaga
     601  gtcatggcag caaaggaatt caagtttact gacaaataca agaagatctt
     651  tgatgaagct gtaaagatcc taactaaatg cactcctgga acttcaggtg
     701  cagcttcatt ggtcaagttc aatgaacaga ttcaaattct tgaaggtgct
     751  ttcggtaaga ttgttgaaga cattggtgag tcttctaaac ccaagaatcc
     801  tcaagagaaa gaaag