Sequence of DPV Potato virus Y

Potato virus Y polyprotein gene, partial cds.

ACC No: FJ843020

Dated: 2010-03-25 | Length: 1940 | CRC: 1240142131

                
ID   FJ843020; SV 1; linear; genomic RNA; STD; VRL; 1940 BP.
XX
AC   FJ843020;
XX
DT   25-MAR-2010 (Rel. 104, Created)
DT   25-MAR-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Potato virus Y polyprotein gene, partial cds.
XX
KW   .
XX
OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1940
RA   Chen Y.-K., Bau H.-J.;
RT   "First report of Potato virus Y infecting tamarillo in Taiwan";
RL   Unpublished.
XX
RN   [2]
RP   1-1940
RA   Chen Y.-K., Bau H.-J.;
RT   ;
RL   Submitted (17-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Plant Pathology, National Chung Hsing University, 250 Kuo Kuang Road,
RL   Taichung 402, Taiwan
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1940
FT                   /organism="Potato virus Y"
FT                   /host="Solanum betaceum (Tamarillo, tree tomato)"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /mol_type="genomic RNA"
FT                   /country="Taiwan"
FT                   /collected_by="Huey-Jun Bau"
FT                   /collection_date="Mar-2007"
FT                   /identified_by="H.J. Bau and Y.K. Chen"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .1612
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /note="contains NIb polymerase and coat protein"
FT                   /protein_id="ADA69468.1"
FT                   /translation="QFDSSLTPYLINAVLVIRSTYMEDWDVGLQMLRNLYTEIIYTPIS
FT                   TPDGTIVKKFRGNNSGQPSTVVDNSLMVVLAMHYALIKECIEFEEIDNTCVFFVNGDDL
FT                   LIAVNPEKESILDRLSQHFSDLGLNYDFSSRTINKEELWFMSHRGLLIEGMYVPKLEEE
FT                   RIVSILQWDRADLAEHRLEAICAAMIESWGYSELTHQIRRFYSWLLQQQPLAAIAQEGK
FT                   APYIASMALRKLYMDRAVDEEELRAFTEMMVALDDEFECDSYEVYHQANDTIDAGENNK
FT                   KDAKPAQGSIQPNSTKGKDKDVNAGTSGTHTVPRIKAITSKMRMPKSKGAAALNLEHLL
FT                   EYAPQQIDISNTRATQSQFDTWYEAVRMAYDIGETEMPTVMNGLMVWCIENGTSPNING
FT                   VWVMMDGSEQVEYPLKPIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLIRN
FT                   LRDVSLARYAFDFYEVTSRTPVRAREAHIQMKAAALKSAQPRLFGLDGGISTQEENTER
FT                   HTTEDVSPSMHTLLGVRNM"
FT   3'UTR           1613. .1940
XX
SQ   Sequence 1940 BP; 603 A; 349 C; 459 G; 529 T; 0 other;

fj843020 Length: 1940  25-MAR-2010  Type: N  Check: 1642  ..

       1  acaatttgat agttcactca ctccatattt aatcaatgct gtcctcgtca
      51  tcagaagcac atacatggaa gattgggatg tgggattgca gatgttgcgc
     101  aatttataca cagagattat ttacacacct atctcaactc cagatggaac
     151  aattgtcaag aagttcagag gaaataatag tggccagccc tccaccgtgg
     201  ttgacaactc tcttatggtt gttcttgcta tgcattacgc tcttattaag
     251  gagtgtattg agtttgaaga gattgacaac acgtgtgtgt tctttgtcaa
     301  cggcgatgac ttattaattg ctgtgaatcc agaaaaggag agcattcttg
     351  acagactatc acaacacttc tcagatcttg gtttaaatta tgatttctcg
     401  tcaagaacaa taaataagga agaattgtgg tttatgtccc atagaggcct
     451  gttgattgag ggcatgtatg tgccgaaact tgaagaggaa agaattgtat
     501  ctattctaca atgggatagg gcagacttgg ctgaacacag gctcgaagca
     551  atctgtgcag ctatgataga gtcatggggt tattctgaat taacacacca
     601  aattaggaga ttttactcat ggttgttgca acaacaacct ctcgcagcaa
     651  tagcacaaga aggaaaagct ccctacatag caagcatggc attgagaaag
     701  ctatacatgg atagagcagt agatgaggag gagctaagag ccttcactga
     751  aatgatggtt gcattggatg atgagtttga gtgtgattct tatgaagtat
     801  accatcaggc aaatgataca attgatgctg gagagaataa taagaaagat
     851  gcaaaaccag cacagggtag catccagcca aattctacta aagggaagga
     901  taaggacgtg aatgccggca catctggaac acatactgta ccaagaataa
     951  aggctattac gtcaaaaatg agaatgccca aaagcaaggg agcagccgca
    1001  ctaaatttag aacacttgct tgagtacgct ccacaacaaa ttgatatttc
    1051  aaatactcgg gcaactcaat cacagtttga tacgtggtat gaggcagtgc
    1101  ggatggcata cgacatagga gaaactgaga tgccaactgt gatgaatggg
    1151  cttatggttt ggtgcattga aaatggaacc tcgccaaata tcaacggagt
    1201  ttgggttatg atggatggga gtgaacaagt tgagtacccg ctgaaaccaa
    1251  tcgttgagaa tgcaaaacca acccttaggc aaatcatggc acatttctca
    1301  gatgttgcag aagcgtatat agaaatgcgc aacaaaaagg aaccatacat
    1351  gccacgatat ggtttaattc gaaacctgcg ggacgtgagt ttagcgcgtt
    1401  atgcctttga cttttatgaa gtcacatcac gaacaccagt gagggctagg
    1451  gaagcgcaca ttcaaatgaa ggccgcagca ttgaaatcag cccaacctcg
    1501  acttttcggg ttggacggtg gcatcagtac acaagaggag aacacagaga
    1551  ggcacaccac cgaggatgtc tctccaagta tgcatactct acttggagtc
    1601  aggaacatgt gatgtagtgt ctctccggat gatatataag tatttacata
    1651  tgcagtaagt attttggctt ttcctgtatt acttttatca taattaataa
    1701  tcagtttgaa tattactaat agatagaggt ggcagggtga tttcgtcatt
    1751  gtggtgactc tatcttttaa ttccgcatta ttaagtctta gataaaagtg
    1801  ccgggttgtc gttgttgtgg atgattcatc gattaggtga tgttgcgatt
    1851  ctgtcgtagc agtgactatg tctggatcta tctgtttggg tgatgttgtg
    1901  atttcgtcat agcagtgact gtaaacttca atcaggagac