Sequence of DPV Bean common mosaic necrosis virus

Ugandan Passiflora virus isolate UGM-58 polyprotein gene, partial cds.

ACC No: FJ896001

Dated: 2010-01-01 | Length: 1718 | CRC: -2127231534

                
ID   FJ896001; SV 1; linear; genomic RNA; STD; VRL; 1718 BP.
XX
AC   FJ896001;
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DT   01-JAN-2010 (Rel. 103, Created)
DT   01-JAN-2010 (Rel. 103, Last updated, Version 1)
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DE   Ugandan Passiflora virus isolate UGM-58 polyprotein gene, partial cds.
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KW   .
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OS   Ugandan Passiflora virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
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RN   [1]
RP   1-1718
RA   Ochwo-Ssemakula M.K.N.;
RT   "Occurrence, identification and characterization of viruses infecting
RT   passion fruit in Uganda";
RL   Unpublished.
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RN   [2]
RP   1-1718
RA   Ochwo-Ssemakula M.K.N., Sengooba T.N.K., Hakiza J.J., Adipala E., Edema R.,
RA   Redinbaugh M., Aritua V., Winter S.;
RT   ;
RL   Submitted (23-MAR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Crop Science, Makerere University, Makerere Hill, Kampala 256, Uganda
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1718
FT                   /organism="Ugandan Passiflora virus"
FT                   /host="Passiflora edulis edulis x Passiflora edulis
FT                   flavicarpa"
FT                   /isolate="UGM-58"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda"
FT                   /collection_date="21-Apr-2005"
FT                   /clone="1"
FT                   /note="PCR_primers=fwd_name: Poty-3, rev_name: M4;
FT                   PCR_primers=fwd_name: S, rev_name: Oligodt-Bam"
FT                   /db_xref="taxon:693419"
FT   CDS             <1. .1461
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="ACZ43793.1"
FT                   /translation="GNNSGQPSTVVDNTLMVVIAMYYACIKQKWTCDDIQERLVFFANG
FT                   DDIILAVQENDEWLLDTLTQSFSELGLNYDFSERSKERTDLWFMSHRAILVDGMYIPKL
FT                   EPERIVSILEWDRSKELMHRTEAICASMIEAWGYGDLLREIRKFYLWLLEKPEFKELAA
FT                   NGKTPYIAETALKKLYTDKDANVHEIQEYLRVIDFEQFEDSMESVSLQSGKKDEEIDAG
FT                   KDKEKSKEQKNTEQPGRVTSTPPTSIKERDVGASSSGKVVPRLRKITQRMNLPTVGERV
FT                   ILDLDHLIEYKPSQTDLFNTRATKSQFAAWYDKVKQEYELDDNQMGVVMNGFMVWCIDN
FT                   GTSPDVNGVWVMMDGQEQVEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSEEFYM
FT                   PRYGLLRNLRDKSLARYAFDFYEVNSKTSERAREAVAQMKAAALANVNTRMFGLDGNVA
FT                   TTSENTERHTARDVNQNMHTLLGMGPVQ"
FT   mat_peptide     <1. .633
FT                   /product="nuclear inclusion B"
FT   mat_peptide     634. .1458
FT                   /product="coat protein"
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SQ   Sequence 1718 BP; 553 A; 322 C; 434 G; 409 T; 0 other;

fj896001 Length: 1718  01-JAN-2010  Type: N  Check: 9484  ..

       1  gggaacaaca gtgggcagcc atcaacagtc gttgacaaca cactcatggt
      51  tgttattgct atgtactatg cgtgtataaa gcaaaagtgg acatgtgacg
     101  atattcaaga aagattggtg ttctttgcaa atggggatga tatcatactt
     151  gcagttcaag aaaatgatga atggttgttg gacactctca cacaatcatt
     201  ttctgaactt ggtctcaact acgacttctc tgagcgatcc aaggaacgga
     251  cagatttgtg gtttatgtca catcgcgcca ttttggtgga tgggatgtat
     301  attcccaaac tagagccaga acgcatcgta tcaatactgg aatgggatcg
     351  cagcaaggag ttgatgcata gaacggaagc tatctgcgct tccatgattg
     401  aggcatgggg ttatggtgac ttgcttagag agatcagaaa gttctactta
     451  tggttacttg aaaaacctga gtttaaagaa ctggcagcaa atggaaagac
     501  accatacata gcggagactg cactgaagaa gctgtacact gacaaggatg
     551  cgaatgttca tgaaatccaa gaatacctga gggttattga ttttgaacaa
     601  tttgaggaca gcatggaatc agtctcactg cagtcaggta agaaagacga
     651  ggagatcgac gcaggtaaag ataaggagaa aagcaaggag caaaagaaca
     701  ccgaacaacc tggaagggtc acgtccactc caccaacaag cattaaggaa
     751  agagacgttg gagcaagttc aagtggaaag gtcgtaccac gattgcgaaa
     801  aatcacacaa aggatgaatc tgccaacagt tggtgaaaga gttatattgg
     851  acttggatca tctcattgag tacaagccaa gtcagacaga tctgttcaac
     901  actcgcgcaa caaagagtca atttgctgcg tggtatgaca aggtgaaaca
     951  ggagtatgag ctggacgaca atcagatggg ggtcgtaatg aatggattca
    1001  tggtgtggtg cattgacaat ggaacatcac cggatgtgaa cggagtgtgg
    1051  gtgatgatgg atgggcaaga gcaagttgaa tacccgttga agccaattgt
    1101  ggagaatgca aaaccaacct tgcggcaaat catgcaccat ttttcggatg
    1151  ccgcagaagc gtacattgaa atgagaaatt ctgaagagtt ctacatgcct
    1201  aggtatggac tacttcgaaa tttgagggac aaaagcttgg ctcggtacgc
    1251  atttgatttt tacgaagtca actcaaagac ttctgagaga gccagagaag
    1301  cggttgcaca gatgaaagca gcagccctcg ccaacgttaa caccaggatg
    1351  tttggcctag atggtaacgt ggcaaccacc agcgaaaata ctgaaaggca
    1401  tactgcacgt gatgtaaatc agaacatgca tactcttttg ggtatgggac
    1451  cagtgcagta aaggattggt aaactctcca cagttagcat ttcgcaacgc
    1501  tagtatctac gtatagtaaa tagtacttta aggttcaatc agtgtggtta
    1551  taccacctcg cattatctta aatagagtgg cgttgccacc gtatgttatg
    1601  ttactattcg cttgtgatag caggagaagc cactgccata ccggagctgt
    1651  cagagtggtt acaccacgcg tactgtccga ggtactgcaa tgaatattct
    1701  cgaaaaaaaa aaaaaaaa