Sequence of DPV Grapevine rupestris stem pitting-associated virus

Grapevine rupestris stem pitting-associated virus isolate EWMR1c collection-date Aug-2006 coat protein gene, complete cds.

ACC No: FJ943335

Dated: 2011-01-20 | Length: 780 | CRC: -748335675

                
ID   FJ943335; SV 1; linear; genomic RNA; STD; VRL; 780 BP.
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AC   FJ943335;
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DT   03-JAN-2010 (Rel. 103, Created)
DT   20-JAN-2011 (Rel. 107, Last updated, Version 2)
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DE   Grapevine rupestris stem pitting-associated virus isolate EWMR1c
DE   collection-date Aug-2006 coat protein gene, complete cds.
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KW   .
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OS   Grapevine rupestris stem pitting-associated virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Foveavirus.
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RN   [1]
RP   1-780
RX   PUBMED; 19759241.
RA   Alabi O.J., Martin R.R., Naidu R.A.;
RT   "Sequence diversity, population genetics and potential recombination events
RT   in grapevine rupestris stem pitting-associated virus in Pacific North-West
RT   vineyards";
RL   J. Gen. Virol. 91(PT 1):265-276(2010).
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RN   [2]
RP   1-780
RA   Alabi O.J., Martin R.R., Naidu R.A.;
RT   ;
RL   Submitted (19-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Irrigated Agriculture Research and Extension
RL   Center, Washington State University, 24106 N. Bunn Rd., Prosser, WA 99350,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .780
FT                   /organism="Grapevine rupestris stem pitting-associated
FT                   virus"
FT                   /host="Vitis vinifera"
FT                   /isolate="EWMR1c"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Pacific Northwest"
FT                   /collection_date="Aug-2006"
FT                   /db_xref="taxon:196400"
FT   CDS             1. .780
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:D2E8Q4"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:D2E8Q4"
FT                   /protein_id="ADA79803.1"
FT                   /translation="MASQIGKLPGESNDAYEARLKSLELARSQKAPEGSNQPPTLGGIL
FT                   PKRKRVIENALPKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIAENVQFDVA
FT                   IDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE
FT                   TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPRGGVKRAPTKAEMVANIASFEVK
FT                   VLRQTMAEGKRSSNLGEISGGTAGALINNPFANVTHE"
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SQ   Sequence 780 BP; 225 A; 160 C; 212 G; 183 T; 0 other;

fj943335 Length: 780  20-JAN-2011  Type: N  Check: 2095  ..

       1  atggcgagcc aaattggaaa actacctgga gaatcaaacg atgcttatga
      51  agcaaggctt aagtctttag agttagcaag gtctcagaag gctccagagg
     101  gctccaatca accccccaca cttggtggaa ttcttcccaa gcggaagaga
     151  gtaattgaaa atgcacttcc aaaaacagtg gacatgcgtg aggtcttgaa
     201  gcatgaatct gtagtgctct ccccaaacgt gatggatgag ggggcaatag
     251  atgagctgat tcgtgccttc ggggagtctg gcatagctga gaatgtgcag
     301  ttcgacgttg cgatagatat tgcccgccac tgctccgatg ttggtagctc
     351  ccaaaggtca accttgattg gtaagagccc tttctgcgaa ttaaacaggt
     401  ctgaaattgc tggaattata agggaagtga ccacactgcg cagattttgc
     451  atgtactacg caaagattgt gtggaacatc catttggaga cgggaatacc
     501  accagctaac tgggccaaga agggatttaa tgagaatgaa aagtttgcag
     551  cctttgattt cttccttgga gtcacagatg aaagcgcgct tgaacctagg
     601  ggtggcgtta agagagctcc gacaaaggca gagatggtgg ctaatatcgc
     651  ctcttttgaa gttaaagtgc tcagacagac tatggctgaa ggaaagcgga
     701  gctccaatct tggagagatc agtggcggaa cggctggggc gcttatcaac
     751  aacccctttg caaatgttac gcatgaataa