Sequence of DPV Capsicum chlorosis virus
Capsicum chlorosis virus isolate NRA segment S, complete sequence.
ACC No: FJ947156
Dated: 2009-06-03 | Length: 3612 | CRC: 52771435
ID FJ947156; SV 1; linear; genomic RNA; STD; VRL; 3612 BP.
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AC FJ947156;
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DT 03-JUN-2009 (Rel. 101, Created)
DT 03-JUN-2009 (Rel. 101, Last updated, Version 1)
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DE Capsicum chlorosis virus isolate NRA segment S, complete sequence.
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KW .
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OS Capsicum chlorosis virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-3612
RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.;
RT "Sequence analysis of S and M RNA segments of Capsicum chlorosis virus
RT isolated from peanut in Thailand";
RL Unpublished.
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RN [2]
RP 1-3612
RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.;
RT ;
RL Submitted (21-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology, Faculty of Agriculture, Kasetsart
RL University, Kamphaeng Saen Campus, Nakhon Pathom 73140, Thailand
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FH Key Location/Qualifiers
FH
FT source 1. .3612
FT /organism="Capsicum chlorosis virus"
FT /segment="S"
FT /host="Arachis hypogaea"
FT /isolate="NRA"
FT /mol_type="genomic RNA"
FT /country="Thailand"
FT /collection_date="20-Jan-2008"
FT /note="serogroup: IV"
FT /db_xref="taxon:163325"
FT gene 67. .1386
FT /gene="NSs"
FT CDS 67. .1386
FT /codon_start=1
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="ACR45978.1"
FT /translation="MSTVKSAASEFVKSYGTRDNRAVNDCYSVFNGEGVNFLNLFMHNN
FT AGIKSAFSINDLGRNEDIKIHEAEVVDTCHDYNYFEKFGLDITFCEHVMSLVVRKPGIK
FT NTGCKFSMHNQIFNPNANTLSIAPGTTLEEGFYEKSKIKPIELLPSDWCLDECWKNNFY
FT IATNGDFALDYGFSVMGKTTSYWRENISREKILSFKHKSLPDNTVPTNRLLSTSTVKGI
FT QLGSELAPETTIILSCKQNLGIDLKSQYRISFHGIQEEGAFARTFCIPFENKSRMICFY
FT AKTVADNSNERTTLIIKIVTKTVDSHSMRPNRNHINCNKLMGARIGLVDFCDSDPNYNQ
FT MIVKELLSVHTQFALNLSGALKKPIIVFKMYDKELINGHVEVSGRILNYQVDADGNVYF
FT LSKTLEVLPRSLSTLSYLNSVAPTLWKESLEHQHFTVELQ"
FT gene complement(2718. .3545)
FT /gene="N"
FT CDS complement(2718. .3545)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="ACR45979.1"
FT /translation="MSNVRQLTEKKIRELLAGGTADIEIETEDSTPGFSFKTFYDNNKS
FT VEMTFTNCLNILKCRKQIFAACKSGKYKFCEKTIVSTDANVGPEDWTFKRTEALIRVKM
FT INMVEKSKNESARQEMYAKVMELPLVAAYGLNIPALFDSCALRMMLCIGGPLPLLSSIK
FT GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKEDLNTLFKQAVKL
FT LSESNPGTASSISLKKYDEQVKYMDKAFSANLSVDDYGVHSKKSSKPSTSIEV"
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SQ Sequence 3612 BP; 1239 A; 579 C; 564 G; 1230 T; 0 other;
fj947156 Length: 3612 03-JUN-2009 Type: N Check: 810 ..
1 agagcaatcg aggcttctaa taattcaaga taaacaacga taagatcaag
51 aaatactact tcaggcatgt ctactgtgaa gagtgctgct tcagaatttg
101 tgaagagcta tggaacaagg gataatagag ctgtcaatga ttgctattct
151 gtattcaatg gagaaggtgt caatttcctc aatctgttca tgcataacaa
201 tgcaggtatt aaatctgcat tcagcatcaa tgatttggga aggaacgaag
251 atatcaaaat ccatgaagct gaggttgttg atacatgcca tgattataat
301 tactttgaga aatttggttt agacataaca ttctgtgaac atgtgatgag
351 tttggtcgta aggaaacctg gcataaagaa cacaggctgc aagttctcaa
401 tgcataatca gatcttcaat ccaaatgcca ataccctgtc tattgctccg
451 ggaacgaccc tagaggaagg tttctatgag aaaagtaaga taaaacccat
501 tgagctcctt ccctcagact ggtgcttgga tgaatgctgg aagaacaatt
551 tttacatagc tactaatgga gactttgctt tggattatgg attctctgtg
601 atgggtaaaa caacttctta ctggagagag aacatctcta gggaaaagat
651 cttatctttc aaacataaaa gtctccctga taatactgtt ccaaccaata
701 ggttgttatc cacatctact gttaagggca ttcagttggg ttctgagcta
751 gctcctgaaa ctacaattat tttgtcatgc aaacaaaatc ttggtattga
801 tctaaaatct cagtatcgca tttcatttca tggtattcaa gaggaaggtg
851 cttttgctag aactttctgc attccctttg aaaacaaatc tagaatgatt
901 tgcttttatg caaagacagt tgctgacaat agcaatgaaa gaacaacttt
951 aattataaaa atagtcacaa agactgttga ctctcattca atgagaccta
1001 acagaaatca tatcaactgc aataaactga tgggagcaag aattggttta
1051 gttgattttt gtgattctga tccaaattat aatcagatga ttgtaaagga
1101 gctgttaagt gttcataccc aatttgcact caacctatct ggagcattga
1151 aaaaaccaat cattgtattt aagatgtatg ataaggaatt gataaatggg
1201 catgtagaag tttcaggaag gattctgaat taccaggtag atgctgatgg
1251 aaatgtttat tttctctcaa aaaccctgga ggtcctccca agatccctat
1301 caaccttaag ttacttaaat agtgttgcac caacactatg gaaagaatcc
1351 ttagagcatc aacatttcac tgtggagctc caataaattt tatgagtgtt
1401 aactttattt aatattatat aatctgcatt attcaagtta atgtaattat
1451 aatgtaagca ctataaacaa gaataaacat agttaatata aataaataag
1501 cataatataa atagatataa atagataaat aaatttatgt ttaaatttaa
1551 gttattcata agttagttaa ttatgttatc atatatttaa atcattgaaa
1601 tgttgtctta atataagtaa gtttaagttg tataatcaaa acaaaaaata
1651 acaagcaaaa acccataaaa actaaaaaac agaaaatcca aaaagacctc
1701 gaaagaggca aatttggctt aagtattttg aatgatttaa tttattatgg
1751 catctttgaa tctataaatt tagataatac ttgaatctta ttagtttaaa
1801 cacttattgt ttgcatgctg aagatataaa tgaagttaag ctcttagcta
1851 agtacttaac tcatgaagtt ttgatgacca taacaacttt ctgattatta
1901 aattcaattc aaacaaagct atgcctattc tagtaagatt gttcattact
1951 aacagtactc aactttagtt tgtctagagt atttctattt acatttttgg
2001 aatataagga aattatatat cattagaagc atttaaattc cttaacttgt
2051 acatttggtt tattggggtt agctaacaat gatgacttct aatctgttta
2101 gtttgattta ctcaaagttt tacttccagt taaactaaat agagccatgt
2151 cctacttgct tagaatagct aattccaaag ttagttcatt taacaaatct
2201 gtctatttaa aactatctat gtaaatctat ttagatcaga gtatctaact
2251 tctccaaaat tccagtgtaa taacttcatt tgatcagtta cttgaaagat
2301 ctaatcaaat tacctatgag agaataaact aatttataga gctcaatatg
2351 atatttaaat ttatgattag ataaaccaat agtttgcctc cgaagaggtc
2401 ttttttggtt tttctatttt ttgatttttt tggatttttt aagtgttttg
2451 aatctaagtt gtctatagat acatggatat acatgtctta attataatat
2501 atatctatag ttgtaaacac acttatactt acttgagtaa ttatatatat
2551 ttatgtttat gtgtatataa ctaataaaca caaacaataa aagttttata
2601 tatttagttt ataacatgac aatagattaa tatgaattga cttataattg
2651 aatataacat acatttatat atatataaaa acatatattc taatataagt
2701 agttacaact atttaaatta cacctctata gaagtactag gctttgagct
2751 cttctttgaa tgaacaccat aatcatccac agacaaattg gcactaaacg
2801 ctttgtccat atacttgact tgctcatcat acttcttaag tgagatagaa
2851 ctagcagtac cagggttgct ctcactaagc aacttgacag cctgtttgaa
2901 caatgtgttc agatcttcct taaattctat ttgagaagca gaaagaactt
2951 tagccacttt gcaaacctgt tcataggtag agaagttttt gatgcccaat
3001 ttctcttttt taacattttg gtaataagct aatgggaaaa taattggtgc
3051 aaggccttta atgctggata atagtggtag aggaccacca atgcataaca
3101 tcatcctgag agcacatgaa tcaaacaaag caggtatgtt caatccatat
3151 gctgccacta aaggtaattc catcaccttt gcatacatct cttgcctagc
3201 actttcattc ttactctttt ctaccatgtt gatcatctta actcttatta
3251 aagcttctgt tctcttaaaa gtccaatcct ccggaccaac attagcgtct
3301 gtagaaacaa ttgttttttc acagaactta tactttccac ttttgcaagc
3351 agcaaaaatc tgctttctac acttcaaaat attaagacag tttgtgaaag
3401 tcatttcaac gctcttgtta ttatcataga atgtcttgaa actgaatcca
3451 ggagttgaat cctcagtctc aatttcaata tctgcagttc caccagccaa
3501 gagttctcta attttcttct cggtaagttg cctgacgtta gacatggtgt
3551 ttactatgga aacgtctgat atgatgactt taaacggatt ttattagtgc
3601 ctcgattgct ct