Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate BUSH1 polyprotein gene, partial cds.
ACC No: FJ999759
Dated: 2010-03-19 | Length: 7780 | CRC: -544475566
ID FJ999759; SV 1; linear; genomic RNA; STD; VRL; 7780 BP.
XX
AC FJ999759;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate BUSH1 polyprotein gene, partial cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7780
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7780
RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, PO Box 27
RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7780
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea batatas"
FT /isolate="BUSH1"
FT /mol_type="genomic RNA"
FT /country="Uganda:Bushenyi"
FT /collection_date="01-Apr-2007"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0B2"
FT /protein_id="ACS29475.1"
FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRNVSVGTHQIAANIFAF
FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAVVDSEEGWYCE
FT DCGSQFNKRDDNVLDNKNDAARALGGWTEYEDATWASFEVAKGDMFEVAPTVGQLEKEI
FT RAIEKAAGKRLTAYEEEMLEELTYKLDVAKMNEEKLEKVLEEPVFSTFSDEFPALEGLK
FT DEAVNETIEEHTEENAIEVVIDVEKPVESETANLKTAEPISNVADVHVAVAPIMAPSVT
FT NSGTAIIKEKLVEKPNTAMWVTKSKTPAAVPAAPSKSVVWVAKPRSTSALFIGEPVAKS
FT TVRACSDVINVGAMMCPITVSAVESHSHQNEKPNESPNAQANDATKEEEPVVKYNITFG
FT SFNYEVSAKGEQVQAAVKLDEMIEGPDTEPILICQTGSSHKSETKKAAKGLFVQDRFSV
FT VGNKVLCKSFPAYKNFINETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDVFEC
FT PYCHMSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS
FT KAKWEAHESICEGEVNIVKIFDGKPTASKKKFKTKQAPNVANIPLDDFMQELVEICLER
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFYHKNKLCLCGRIDRERKV
FT RSYEVRPGWSGVILHRNQVAECDWSKFVFIDDLCVVQGRNLITNKVENALEKKGANRLK
FT QIQFYASSIIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC
FT CFRVIKSKRIDIVNALNKVKQRGERDDFIYDELIKLFELQAPPPYEIATIISDNDMLRT
FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE
FT EHMPFLKKAVDEIQLLNSTDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR
FT ANKAGMAVIKSETSLSKAFALMNSAKSMDVVHALIGEDVIEHVNGACLLKNDKTFFSIG
FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV
FT GFINEDEMEFYKNQMNQIVLNLGPWPTFEQYLIELRAVSLDYPKVRGCPAAIHLVSHAN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID
FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIHGLQDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFEEANERAYGKQSWNLR
FT VIWGACKEVLYAATRGVFVKVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEDLGGGELYVEQHGKREEAFLFKICAIF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGTVGIESHANESDDKVEQDLKESLKFTSFE
FT IEVPNVILSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG
FT ETDLRVYSGVGGGKSTRLPKELSVFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPVELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDCERETRHKIKVETLSEMPIESWVSMQGSGVVGDATSAGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDVVVDFGEKISPNLASDERCITLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="P1 proteinase"
FT mat_peptide 2414. .3775
FT /product="helper component proteinase; HC-Pro"
FT mat_peptide 3776. .4657
FT /product="P3 protein"
FT mat_peptide 4658. .4813
FT /product="6K1 protein"
FT mat_peptide 4814. .>5867
FT /product="cytoplasmic inclusion protein; CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0B3"
FT /protein_id="ACS29476.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT INCPRGVASAISEHFKDAFADLSLNYDFDHICDKITDVDFMSHSFMWLDVEQMYIPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAKKHGLNEVLME
FT REKVRALYVNEDFDASAFEKFYPEIFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI
FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVNPTQIVTFEPPRVTGFGALWIPR
FT QQRNYMTPAYIEKIKAYVPHSNLIESGLASEVQLTSWFENTSRDYQVSMDVFMSAILPA
FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN
FT VTRRRIRVFALAAPGDSDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide <5968. .6564
FT /product="nuclear inclusion body protein; NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein; CP"
FT 3'UTR 7474. .7780
XX
SQ Sequence 7780 BP; 2380 A; 1395 C; 1881 G; 2024 T; 100 other;
fj999759 Length: 7780 19-MAR-2010 Type: N Check: 5864 ..
1 aaaataaaaa tgacatagag aaaatttgaa agataagcgt gaactcagca
51 aacctattcg caactcagct ttactttaaa tactttattt taattttatc
101 gaactgtgga gtccgcttag aaacggatca gacgtggaaa tggggaaatc
151 caaacttact tataagcaat gcattgctaa gtggggaaaa gccgcacttg
201 aggcgcaaaa caatggatct aaaaggaatg tttctgttgg aactcatcaa
251 attgcggcaa atatctttgc gttctatgat gcaaaggact accacctatt
301 tgccatgggc aagagaggtg gactgactcc agcagctgag caactgagaa
351 tcgcaattga acgaggaaca atttataagg tgcagtacga ctgccacttt
401 tgtcccgatt gcgatgcagt tgttgattct gaagagggat ggtactgtga
451 agattgcggc tcacaattca ataagcgcga cgacaacgtg cttgataaca
501 agaacgacgc cgcacgcgct cttggtgggt ggactgaata cgaagacgcc
551 acctgggcgt cgttcgaggt tgctaagggt gacatgtttg aagtagcacc
601 aactgtgggt caactcgaaa aagagatccg agccatagaa aaagcagctg
651 gcaaaagact taccgcttat gaagaagaaa tgcttgaaga gttgacctat
701 aagcttgatg tggccaaaat gaacgaggaa aaactggaaa aagttctcga
751 ggaacctgtt ttctcaactt tcagcgacga atttccggct ctcgaggggc
801 taaaagatga agcagttaat gaaaccattg aggaacatac tgaggaaaat
851 gcgattgaag tcgtaattga tgttgaaaag cctgtggaat ctgaaactgc
901 aaatttgaaa actgctgaac caattagcaa cgttgctgac gtgcatgtag
951 ctgtggcacc tatcatggct ccaagtgtga ccaactcagg aacggcaatc
1001 atcaaggaga agttagttga aaaaccaaat acagctatgt gggtcacaaa
1051 gtcaaaaaca cctgctgcag ttcctgctgc accatctaag tcagttgtct
1101 gggttgctaa gcctaggtca acatccgcac ttttcatcgg tgaaccggtt
1151 gccaaatcga ctgtgagagc ttgcagtgat gtgattaatg taggcgctat
1201 gatgtgtcct atcacggtat cagcagttga atcacacagt catcaaaatg
1251 aaaagcctaa tgagtctcca aacgcacaag ctaacgatgc aacgaaggaa
1301 gaagagccag tggttaaata caatataact tttggttcat ttaattatga
1351 agtaagtgct aaaggagaac aagttcaagc tgccgttaaa cttgacgaga
1401 tgatagaagg acctgacact gaaccaattc tgatttgcca aacaggaagt
1451 tcccataaat ctgaaaccaa gaaggcggca aaagggcttt ttgttcagga
1501 tagattttca gtggttggta ataaggttct gtgcaagtcg tttcctgctt
1551 acaagaattt cattaatgaa acaaggttgg gaggaattta cagaacaaga
1601 aaaggaaatt ataagaacgc tgcattgcgt ttattgaagg ctaccaaagt
1651 tcaagtgttt tatgatggga taaaggatgt tttcgaatgt ccgtattgcc
1701 acatgagcag taatgaatta gagggcctta atggagacaa ttgtgaaaag
1751 tgcaaggatc tattttacaa acacattgat gatccaagga aggttgagga
1801 ggaatatctt atggttcctc tcgtgcccat tgatcagcat gttcatgaag
1851 aacatagcat cattagcaag gctaaatggg aagcgcatga atccatctgc
1901 gaaggagaag tgaacattgt taaaattttt gatggaaagc caactgcaag
1951 caagaagaaa ttcaaaacta agcaagctcc aaatgttgca aacataccac
2001 ttgatgactt tatgcaggag ttagtagaaa tctgtctcga aaggaacacc
2051 cctattgaaa tcattggagg tgtgaaatct tttaatgtgg ttaagttgag
2101 gcatactacg agagacatta gcaagtctgg tgaggatgat atgtatccaa
2151 ctgaaaggga atggttttat cacaagaata agctatgttt gtgtggcaga
2201 atcgatcgtg agaggaaagt cagaagctat gaagtgcgcc caggttggag
2251 tggagtaatc ttgcacagga atcaagtggc ggaatgtgat tggagcaagt
2301 ttgttttcat tgatgattta tgcgtggtgc aaggcagaaa cttgattacg
2351 aataaggttg agaacgcact tgaaaagaaa ggggctaata gacttaaaca
2401 gatacaattc tatgcaagtt ctattatacc taatttcaag gatgaatttg
2451 acagagccag ccgactgaaa gctgatcacg aaccggatga gtcatctaac
2501 aatgaactca ttggcaggct ggccaagctt gttgcagcag tcattccgaa
2551 aggccattta tactgcaaaa cgtgctgttt tagggtcatc aagagcaagc
2601 gcatagacat agtcaacgca ttgaataagg ttaagcagcg tggtgaacgg
2651 gatgatttta tttatgatga gctcatcaag cttttcgagt tacaggcacc
2701 accaccatat gagatagcaa cgataatcag tgataacgat atgttgcgca
2751 cattaggatt gggtggagac ctatacagtg gacgactgag tctcataatg
2801 caacatttgc agggattgca cacatcaata tcaatgcttc accagtcact
2851 tgcaggggcc caaaatgacc aacaaattga caggcaagcg ctccacaacc
2901 aagtgcgaat tttgcatcag agaaatgagg agcatatgcc tttcctaaag
2951 aaggcagttg atgaaattca gcttttgaat tcaacagacc aggtcgccaa
3001 tgctcgggaa ttgtatttgg atactagggc aactagcact ggagattttg
3051 atatattacg aaaatatcag agcatacatg agttctttcc caatattatg
3101 agccgagcca acaaagcggg gatggcagtt atcaaatctg aaacatcatt
3151 gagcaaagct tttgctctta tgaacagtgc taaatcgatg gacgttgttc
3201 atgcgctcat aggggaagac gtcatagaac atgttaatgg agcttgcttg
3251 ctaaagaacg acaagacatt tttctcaatt ggttgcaagc aaggtgttga
3301 tggtagcaag atgtatggtc cgctttgtcc gaccaaacag catgtaagaa
3351 ttcaccgagt tgagtctaac atgcaaattc ctttgccaac attccacgat
3401 gcaactgtat gggagtttaa cgaaggttat tgctacgcca accaatttgc
3451 tataatggtt ggtttcatca atgaggatga aatggagttt tataagaatc
3501 aaatgaacca aattgtgttg aatttagggc cttggccgac ttttgagcaa
3551 tatttaattg agctccgagc agtttcactt gattacccaa aagttagagg
3601 gtgtcctgct gctattcatt tagtttccca tgcaaacaag cttattcatg
3651 tcttgggaca atttggaaca ataaaccaag gttggcacgc acttgaagta
3701 gcaactgtag gtgaacttgt tgatttgtgc cataagaaag ttgaaggtga
3751 gatgctaaca tataaagttg gtggcattta tgactgggtg actaagaaga
3801 atgctttcat cgatttattt gagcaccacc cagaaaatgt attcaaaatt
3851 tgcacatcgc catcagtgtt gtggttgttt gctcgcagct gcgaaaaaca
3901 tgattttatc aactacatca tggccaggga ccactcattg gtaggtttgt
3951 tcatcaaact agagtatgtt ggcaagcatc ttcatatttt tcaaagtgtc
4001 gatgatgttt gtgttgagta cgcagcgtct atgagggaaa tcatcgagga
4051 gcacgctgat attcatgggc tgcaggattc agtggtagat agaatggttc
4101 atgcatatca taatgaagtg agggaagcaa acaagtatga gttagttgac
4151 agaattcttg aaaaaaacat tggattaacc gcaaaagaaa tttcatcgcg
4201 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc
4251 agcgtttgaa attaatgcca cattccttga atgcgcagaa actcttcgaa
4301 gaggcaaacg agcgcgcgta cgggaaacaa tcatggaatt tacgcgtgat
4351 atggggtgcg tgcaaggaag tgttatatgc agccacacgc ggagtttttg
4401 taaaagtcaa aggaacaact gtgcgttgtg ccgacgccgt agtatatggc
4451 ttctatggta ggacacgagc aatggtaaca agctgggcta gtgaggcttg
4501 gggagctata tttacatcgt gtctgagagc attagttgtt atggtggtca
4551 cggcatacat ctcaacctgg attcctaaga ttaggaagat gatcaaacgc
4601 gagaagaaac agtttgaaga tcttggaggt ggagagttgt atgtggagca
4651 gcatggcaaa agagaggagg catttttatt taagatttgc gccatctttg
4701 cacttatagc aggcatagtt gactacgagt ggggagcagc tgcatgcgca
4751 acaatgaaca aagtcaagag catatgcact gtccttggga ctgttgggat
4801 tgagagccac gctaacgagt ctgatgacaa agtcgagcaa gacttgaagg
4851 agtcccttaa atttacatct tttgagattg aagtgccaaa cgtgattcta
4901 tcacaggatg atatgacttt tgaaaggtgg tttcaacatc aaattcaata
4951 tggcaacgtg tgtgctgacc ccatctatag tggtccgcta cgcatgttag
5001 caatcacaga aaactctgcg agagagctag caatgaacat tcgcacatca
5051 ggggaaaccg acttgcgtgt ctatagtggt gttggtggag gaaaatcaac
5101 aaggttaccc aaggaactta gcgtgtttgg gcacgtgcta atttgtgttc
5151 ccacgagagt tttggcggaa agcttattaa cgtcattcat ggtacttttc
5201 aatatggatg ttaatgtggc ttatcgagga aggatacata ctggcaacgc
5251 accaatcaca ataatgactt atggttacgc attcaacttc ttggtgcaca
5301 aaccagtgga actaaaccga tatgattatg tgttgctaga tgaaattcac
5351 accaatcctg ttgaatttgc acctctgttt tcttttatca aaaccacaga
5401 tccaaagaag aaaattgtta agttatcagc aacccatgcc gggatggact
5451 gtgagcgcga aaccaggcac aagattaaag tagaaacctt gagtgaaatg
5501 ccaattgaaa gctgggtttc tatgcaaggc tctggagttg ttggtgatgc
5551 gacatctgct ggggacgtaa ttctggtctt tgttgcatct tttaaggatg
5601 tcgatacatg tgctaatgga ttgcgatcta aaggcttcaa agttctaaag
5651 gttgatagta gaaacttcag gcgtgacgca gacgtggata aacaaatcca
5701 atcactgggt gaagggaaga aattcatagt cgccacaaac ataattgaaa
5751 atggagtgac attcaacatt gatgttgtcg ttgattttgg cgagaaaatc
5801 agccccaatc ttgcgagcga tgagcggtgt atcacattag gaaggcagag
5851 aatatcgcga gcagaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggt aataatagtg gtcagccttc aacagttgtt
6001 gataatacgt tgatcctgat gattgctatg gaatacgcga tagctaaggt
6051 ttttgtcaca cgccctgaca tcaagtacgt ctgtaatggg gacgaccttc
6101 tcattaattg tccaaggggc gtcgcaagcg ccattagtga gcacttcaaa
6151 gacgcattcg cagacttaag cttgaactat gactttgatc atatttgtga
6201 caaaattaca gacgttgatt ttatgagtca tagtttcatg tggctggatg
6251 ttgagcagat gtacatacca aagctggaca aggagcgaat cgtggcaatt
6301 ctggagtggg aaaggagtga tgagcaattc agaacgagga gcgccttgaa
6351 cgctgcttat attgagagct ttggctatga agacttaatg gctgagattg
6401 agaaattcgc tcacttttgg gctaaaaagc acggtcttaa tgaagtcttg
6451 atggagcgag aaaaggttag agccttgtac gttaatgaag attttgatgc
6501 gtcagctttt gagaagttct atccggaaat attttcgcca tttgatgttt
6551 atgttgaacc acatgcatca acatctaaga caattgagga gctacagaaa
6601 gaaatggagg atttggatgc agacacaaca attactgtgg ttcaaaggga
6651 aacacaaaag gcgagaataa gagaacaaat tgaaacactt agggcgcaac
6701 aaatcgtgag gccttctgag gcacagctac agcctgacgt aaatcccacg
6751 caaattgtca cgttcgaacc accaagagtc actgggtttg gcgccttatg
6801 gattccgcgt caacaaagga actacatgac gccagcttat atcgagaaga
6851 taaaggctta tgttccgcat tcaaacttga ttgaatctgg actagctagt
6901 gaagttcaat tgaccagttg gttcgagaat acgagcaggg attaccaagt
6951 tagtatggat gtcttcatga gtgcaatact gcccgcatgg attgtcaact
7001 gcataatcaa tggaacgtct caggagcgca ccaatgagca cacatggaga
7051 gctgtgatca tggcgaatat ggaggatcag gaagtgctct attaccccat
7101 caagcccata ataatcaatg ctcaaccaac tctgaggcag gtgatgcgcc
7151 acttcggaga acaagccgtt gctcaataca tgaatagcct tcaagttggg
7201 aaacctttta cagtgaaagg agccgtgact gctggatacg ctaatgttca
7251 agatgcatgg ttaggcattg acttccttcg ggacacaatg caattaacga
7301 caaaacagat ggaggtcaag catcaaataa tcgcagcgaa cgttacaagg
7351 cgtagaatcc gtgtttttgc tcttgcagcg ccgggggata gtgatgaatt
7401 agacacagaa aggcacgttg tcgacgatgt ggctaggggt cgtcatagtc
7451 tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact
7501 gtgtgtttta ttttaatcat gttttatgct ttgtgtttgt ttgttgtgac
7551 acttgaacca ggtacagctg gcaggtgttt cggcatggtg tggttaggca
7601 attggttcgc accggttgtc taagaagcgc tatgtatcac gtggttggtt
7651 aattcatagt ttatatggat taatcaagaa gcgtctatcg cccaaaaggg
7701 caccagaaaa tggttgcgcc attcgtgacg taatcagttt ttggagtttg
7751 gctaggtaac ttgtcgcctt tccaaaagcc