Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate MBL86 polyprotein gene, partial cds.
ACC No: FJ999761
Dated: 2010-03-19 | Length: 7784 | CRC: -768870140
ID FJ999761; SV 1; linear; genomic RNA; STD; VRL; 7784 BP.
XX
AC FJ999761;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate MBL86 polyprotein gene, partial cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7784
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7784
RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, PO Box 27
RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7784
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea acuminata"
FT /isolate="MBL86"
FT /mol_type="genomic RNA"
FT /country="Uganda:Mbale"
FT /collection_date="01-Apr-2007"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0B6"
FT /protein_id="ACS29479.1"
FT /translation="MGKSKLTYKQCIAKWGKAALEVQNNGSKRSVPVGTHQIAANIFAF
FT YDAKDYHLFAMGKRGGLTPAAEQLRVAIERGTIYKVQYDCHFCPDCDAIVDSDEGWYCE
FT DCGSQFNKRDDNVLGNKNDTARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI
FT KALYETPGKRLTAYYEERLEELAYKLDVAKMNEEKQETVLEETVFSISNDEFPALEGPQ
FT TEVVSGTIEEHTEENYIEVPSEFEQPVEFEFTNGTTNEPVSEAADVHVVATPVVALGAT
FT SSETATDKEKLAEKPKRVMWITKPKTSAAAPVMLSKSAVWVAKPRLASALSVVEPVAKP
FT TAEASSGAINIGAMVCPITIAAIESHSHQNEKLNESLSAQVNGATKEEEPVIKYNITFG
FT SFNYEVSAKGEQVQAAVKLDEMIEGSDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDIFEC
FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDPPRKVEEEYLMVPLVPIDQHVHEEHSIIS
FT KAKWEAHESICEGEVSIAKIFDGKLIASKKKFKTKQAPNVANIPLDDFMQELVEICLEK
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFYHKNKLCLCGGYDREKKI
FT RSSEVRPGWSGVILHKNQVAECDWSKFVFIDDICVVQGRNLITNKIENALEKKGSNRLK
FT QIQFYANSIIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC
FT CFRVIKSKRIDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYRIATIISDDDVLRT
FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQSDQQIDRQALHNQVRILHQRNE
FT EHMPFLKKAIDEIQLLNATDQVANARELYLDTRATSAGDFGILRKYQSIHEFFPNIMSR
FT ANKAGVAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDVIENVNGACLLKNDKTFFSIG
FT CKQGVDGSKMYVPLCPTKQHVRIHRVESNMQIPMPTFHDATVWEFNEGYCYANQFAIMV
FT GFVNEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKRVEGEMLTYKVGGIYDWVTKKNAFID
FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIQGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGIIAKEISSRKLITMYHQDLFSGHEWQRLKLMPHSLNAQKLFDEANERAYGKQSWNLR
FT VVWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREESFLFKICAVF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFASFE
FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRASG
FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDHECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDVVVDFGEKISPNLSSDERCVTLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="P1 proteinase"
FT mat_peptide 2414. .3775
FT /product="helper component proteinase; HC-Pro"
FT mat_peptide 3776. .4657
FT /product="P3 protein"
FT mat_peptide 4658. .4813
FT /product="6K1 protein"
FT mat_peptide 4814. .>5867
FT /product="cytoplasmic inclusion protein; CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0B7"
FT /protein_id="ACS29480.1"
FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL
FT INCPRSIASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD
FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAEKHGLNDVLME
FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI
FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR
FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIESNYGDYQVSMDVFMTTVLPA
FT WIVNCIVNGTSQERTNEHTWRAVVMANMEDQEVLYYPIKPIIVNAQPNLRQVMRHFGEQ
FT AVAQSRNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide <5968. .6564
FT /product="nuclear inclusion body protein; NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein; CP"
FT 3'UTR 7474. .7784
XX
SQ Sequence 7784 BP; 2355 A; 1388 C; 1900 G; 2041 T; 100 other;
fj999761 Length: 7784 19-MAR-2010 Type: N Check: 3515 ..
1 taaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaacttagca
51 aacttattcg caattcagct ttactttaaa tactttattt taattttatc
101 gaactgtggt gtccgctttg aaacggatca gacgcagaaa tggggaaatc
151 caaactcact tacaaacaat gcattgccaa gtgggggaaa gccgcccttg
201 aggtacagaa caacggatcg aagaggagtg tccctgttgg aactcatcaa
251 atcgcggcga acatctttgc gttctatgac gcaaaagact accatctttt
301 tgccatgggc aaaagaggtg gactgactcc ggcagctgag caattgagag
351 ttgcaattga gcgaggaaca atttataagg tgcagtacga ctgccacttc
401 tgtcccgatt gcgatgcaat tgtcgactct gacgagggat ggtattgcga
451 ggattgcggt tcgcaattca ataagcgcga tgataacgta cttggtaaca
501 aaaacgatac cgcacgcgct cttggtgggt ggactgaata tgaagacgcc
551 acttgggcgt catttgaggc tgctaaggct gatatgctcg aagtagcacc
601 aactgtgggt caacttgaga aagagatcaa agccctatat gagacacctg
651 gtaaaagact cactgcttat tacgaagaaa ggctcgaaga gttggcctat
701 aaacttgatg tggccaagat gaatgaggag aagcaggaga cagttctcga
751 ggaaactgtt ttctcaattt ccaatgacga atttccggct ctcgaggggc
801 cacaaactga agtagtcagt ggaactattg aggaacatac tgaggaaaac
851 tacattgagg tcccgagtga atttgaacag cctgtggagt ttgaatttac
901 aaatgggact actaatgaac cagttagtga agctgctgat gtgcatgtag
951 tcgcgacacc tgttgtggct ctaggtgcaa caagctccga gacggcaact
1001 gacaaggaaa agttggctga aaaaccaaag agagttatgt ggattacaaa
1051 gccaaaaact tctgctgcag ctcctgtcat gctttctaag tcggctgtct
1101 gggttgctaa gcctaggcta gcatctgcac tttctgtagt tgaaccagtt
1151 gctaaaccaa cagcggaagc tagcagtggc gcgatcaaca taggcgctat
1201 ggtgtgtcct atcacgattg cagcaattga atcacacagc catcaaaatg
1251 aaaagctcaa tgagtctctg agcgcacaag ttaatggcgc gacgaaggaa
1301 gaggaaccag tgattaaata caatataact tttggttcat tcaattatga
1351 agtaagcgca aaaggggaac aagtgcaagc tgctgtcaaa cttgacgaga
1401 tgatagaagg atctgacact gaacccattc tgatttgcca aacaggaagt
1451 tctcataaac atgaaaccaa gaaagctgcg aaggggcttt tcgttcagga
1501 tagattttca gtgattggga ataaggtact atgcaagtca tttcctgcct
1551 tcaagaattt catgaatgag acaaggttgg gagggattta tagaacaaga
1601 aaaggaaatt acaaaaacgc tgcattacgc ttattgaagg ctaccaaagt
1651 tcaagtattt tatgatggca ttaaggacat ttttgaatgt ccgtattgcc
1701 acgtgagcag taatgagcta gagggcctta atggtgataa ctgcgaaaaa
1751 tgcaaggatc tgttttataa acacattgat cccccaagga aagttgagga
1801 agaatatctt atggttcctc tcgtgcctat cgatcagcat gttcatgaag
1851 aacatagcat catcagtaag gctaaatggg aagcgcatga gtctatatgc
1901 gaaggagaag tgagtattgc taagattttt gatggcaaac taattgcgag
1951 caagaagaag ttcaaaacta agcaagctcc aaatgttgca aatataccac
2001 ttgacgactt tatgcaagaa ctagttgaaa tttgtcttga gaaaaacacc
2051 cctattgaga tcattggggg tgtgaaatct tttaatgtgg tcaagttgag
2101 gcatactacg agagatatca gcaaatctgg tgaggatgat atgtatccaa
2151 ctgaaaggga gtggttctac cacaagaata aactatgttt gtgtggtgga
2201 tatgatcgag agaagaaaat cagaagttca gaggtgcgcc caggttggag
2251 tggagtaatc ttacataaaa atcaagtggc ggaatgtgat tggagcaagt
2301 ttgttttcat tgatgacata tgcgtagtgc aagggagaaa cttgatcacg
2351 aataaaattg agaatgcact tgaaaagaaa gggtctaata gacttaaaca
2401 gatacaattc tatgcaaatt ctattatacc caacttcaag gatgaatttg
2451 acagagctag ccgtctgaaa gctgatcatg aaccagatga gtcgtccaac
2501 aacgaactca ttggtaggct agctaaactt gttgcagcag tcattccaaa
2551 aggtcaccta tattgcaaaa catgctgttt tagggtgatc aagagcaagc
2601 gcatagatat agtcaacgcg ctgaataagg ctaagcagcg tggtgaacgg
2651 gatgagttta tttatgatga gctcatcaaa ctctttgagc tccaagcacc
2701 accaccttat aggattgcaa cgattatcag cgatgacgat gtgttgcgaa
2751 cattaggact gggtggagac ctatatagtg ggcgattgag tctcataatg
2801 cagcacttgc aagggttgca cacgtctata tcaatgcttc accaatcgct
2851 tgcaggggct cagagcgacc aacaaattga caggcaagcg ctccacaacc
2901 aagtgcggat tttacaccag agaaatgaag agcatatgcc ttttctgaag
2951 aaggcaattg atgaaattca gctgttaaat gcgacagatc aagttgccaa
3001 tgctcgggaa ttgtacttgg atactagggc aactagtgct ggggattttg
3051 gcattttacg gaaatatcag agcatccatg agttctttcc caatatcatg
3101 agccgggcca ataaagcagg tgtggcagtt atcaaatctg aaacatcatt
3151 gagcaaagcc tttgccctta tgaacagtgc taagtcaatg gacgctatcc
3201 atacgctcat aggggaagac gtcatagaaa acgttaatgg ggcttgctta
3251 ctaaagaatg acaaaacatt tttctcaatt ggttgcaagc aaggtgttga
3301 tggcagcaaa atgtatgtcc cgctttgtcc gaccaaacaa catgtaagaa
3351 ttcaccgagt tgaatctaac atgcaaattc ctatgccaac atttcacgat
3401 gcaactgtct gggagtttaa cgaaggttat tgctatgcta atcaatttgc
3451 tataatggtt ggttttgtca atgaagacga aatggagttc tataaaaacc
3501 aaatgaacca agttgtgttg aacttagggg cttggccgac ttttgagcaa
3551 tatttaattg agctacgagc aatttcactt gattacccaa aagttagggg
3601 gtgcccagct gctattcatt tagtttctca tgcaaacaag cttattcatg
3651 ttttggggca atttggaaca ataaatcaag gttggcatgc gcttgaagta
3701 gcaactgtag gcgaacttgt ggacttgtgc cataagagag ttgaaggtga
3751 gatgttgact tacaaagttg gtggcattta tgactgggtg actaaaaaga
3801 acgctttcat cgacctattt gaacaccatc cagaaaacat attcaaaatt
3851 tgtacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca
3901 tgatttcatt aactacatca tggctaggga ccattcattg gtgggtttgt
3951 tcattaaatt ggaatatgtt ggcaagcatc ttcatatttt ccaaagtgtt
4001 gatgatgttt gtgttgaata cgcggcgtct atgagagaaa tcattgaaga
4051 gcacgctgat attcaagggc tgcgggactc agtggtggat agaatggttc
4101 atgcatatca caatgaagtg agggaagcaa ataagtatga gctagtcgat
4151 agaattcttg aaaaaaacat tggaataatc gcaaaagaaa tttcatcgcg
4201 aaagctcatc acaatgtatc atcaagactt gttctctggg cacgaatggc
4251 agcgtttgaa gttaatgcca cactccttga atgcgcagaa acttttcgac
4301 gaggcaaacg agcgcgcata cggaaaacaa tcatggaatt tacgcgtggt
4351 ttggggtgcg tgcaaggaag tgttatatgc agtcacacgc ggagcttatg
4401 taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt agtgtatggc
4451 ttctatggta gaacacgagc gatggtaaca agctgggcta gtgaagcatg
4501 gggagctata tttacgtcgt gtctaagagc attagttgtt atggttgtca
4551 cggcatacat ttcaacttgg attccaaaaa ttaggaagat gattaagcgc
4601 gagaagaaac aatttgaaga gcttggaggt ggagagttgt atgtggaaca
4651 acatggcaaa agagaggaat cgtttttatt caagatttgc gccgtctttg
4701 cacttatagc aggcatagtt gactacgaat ggggagcagc tgcatgcgct
4751 acaatgaaca aagttaagag tatatgcact gtccttgggt ctgtcgggat
4801 tgagagtcac gctaatgagc ctgacgacaa agttgagcag gacttgaagg
4851 agtcccttaa atttgcatct tttgaaattg aagtgccaaa cgtagttcta
4901 tcgcaagatg atatgacctt tgaaaggtgg ttccaacatc agatccaata
4951 tggcaacgtg tgtgcggatc ccatctatag tggtccacta cgcatgctag
5001 caattacaga aaattctgcg agagaactgg caatgaacat tcgagcatca
5051 ggggaaactg acttgcgtgt ttatagtggc gttggtggag gaaaatcaac
5101 aaggttgccc aaggaactca gcatgtttgg gcatgtgcta atctgcgttc
5151 caacgagagt tctggcggaa agcttattaa catcattcat ggtactattt
5201 aacatggatg ttaatgtggc ttatcgagga aggatacaca ctggtaacgc
5251 accgatcaca ataatgactt atggttatgc gttcaacttt ttggtgcata
5301 aaccaatgga attgaatcga tatgattatg tgttgctaga tgaaatccac
5351 actaatcctg ttgaatttgc acctctgttt tcttttatca aaactacaga
5401 tccaaagaag aagattgtca aactgtcagc aacccacgct ggaatggacc
5451 acgagtgtga aaccaggcac aagattaagg tggaaacttt gagcgaaatg
5501 ccaattgaaa gctgggtttc catgcaaggt tctggagttg ttggcgacgc
5551 gacatctgtt ggggacgtga ttttagtctt tgttgcatct ttcaaggatg
5601 tcgatacatg tgctaatgga ttgcgatcta aaggcttcaa agttttgaaa
5651 gttgatagta gaaactttag acgtgacgca gatgtggata aacaaatcca
5701 atcactgggt gaagggaaga aattcatagt cgccacaaat ataattgaaa
5751 atggggtgac atttaacatt gatgttgttg ttgactttgg cgagaaaatc
5801 agccccaatc tctcgagcga tgagcggtgc gtcacattag ggaggcagag
5851 aatatcgaga gcagaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggt aataacagtg ggcagccttc aacagttgtt
6001 gataacacgt tgatcctaat gattgctatg gaatatgcga tagctaaggt
6051 ctttgtcaca cgccctgaca tcaagtacgt ctgtaatggg gacgaccttc
6101 taattaattg tccaaggagc atcgcaagcg ccattagtga gcacttcaag
6151 gatgcatttg cagatttaag cttgaactac gactttgatc atgtttgtga
6201 caaaatcaca gacgttgatt ttatgagtca tagtttcatg tggctggatg
6251 ctgagcagat gtatatacca aagctagata aggagcgaat tgtggcaatt
6301 ttggagtggg aaaggagtga tgaacaattc agaacaagga gcgccttgaa
6351 cgccgcttat attgagagtt ttggatatga agacttaatg gctgagattg
6401 agaaattcgc tcacttttgg gctgaaaagc atggtctcaa tgacgtcttg
6451 atggagcgag agaaagttag agacttgtac gttaatgagg attttgatgc
6501 gtcggctttt gagaagttct atccggaaac gttttcgcca tttgatgttt
6551 atgttgaacc acatgcatcg acatccaaaa caatcgagga gctacagaaa
6601 gaaatggagg atttggatgc agatacaaca attactgtgg ttcaaaggga
6651 gacacagaag gcgagaataa gagaacaaat tgagacactt agggcacaac
6701 aaattgtgag accttctgag gcacagctac agcctgacgt aactcccacg
6751 caaattgtta cgtttgaacc gccgagagtc actggatttg gcgctttatg
6801 gattccgcgc caacaaagga actacatgac gacagcttat attgagaaaa
6851 taaaggctta tgttccgcac tcaaacttga ttgaatcagg attagctagt
6901 gaagctcaat tgactagttg gattgaaagc aattacgggg actatcaagt
6951 tagtatggac gtcttcatga ctacagtact gccagcgtgg atcgtcaatt
7001 gcatagtcaa tggaacgtct caggagcgca caaatgagca cacatggaga
7051 gctgtggtta tggcaaatat ggaagatcag gaggtgcttt attaccctat
7101 caagcccata attgtaaacg ctcaaccaaa tttgaggcaa gtgatgcgtc
7151 attttggcga gcaagccgtt gctcaatcca gaaacagtct ccaagtggga
7201 aaacctttca cagtgaaggg cgccgtaact gctggttacg ctaatgttca
7251 agatgcttgg ttgggtattg actttcttcg cgacacgatg ccgttgacaa
7301 caaaacagat ggaagtcaag caccaaatta tcgcagcgaa cgttacaagg
7351 cggaaaattc gtgtttttgc tcttgcagca ccgggagatg gcgatgaatt
7401 agatacagaa aggcatgttg tcgacgatgt tgctagaggt cgtcacagtc
7451 tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact
7501 gcgtgttttt tttatttcat ttacgtttca tgcttcttgt ttgtttgttg
7551 tggcacttga accaggtaca gctggcaggt gtttcggcat ggtgtggttg
7601 gacaattggt tcgcaccggt agtctaagaa gcgctgtgta tcacgtggtt
7651 ggttagttca tatttcgtat gggttaatca agaagcgtct attgctcaaa
7701 agggcaccag aaaatggttg cgtcattcgt ggcgtgatca gtttttggag
7751 tttggctagg taacttgtcg cctattcaaa agcc