Sequence of DPV Sweet potato mild mottle virus
Sweet potato mild mottle virus isolate RUK93 polyprotein gene, partial cds.
ACC No: FJ999765
Dated: 2010-03-19 | Length: 7780 | CRC: 8941032
ID FJ999765; SV 1; linear; genomic RNA; STD; VRL; 7780 BP.
XX
AC FJ999765;
XX
DT 25-JAN-2010 (Rel. 103, Created)
DT 19-MAR-2010 (Rel. 104, Last updated, Version 2)
XX
DE Sweet potato mild mottle virus isolate RUK93 polyprotein gene, partial cds.
XX
KW .
XX
OS Sweet potato mild mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Ipomovirus.
XX
RN [1]
RP 1-7780
RX PUBMED; 19923261.
RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.;
RT "Recombination and selection pressure in the ipomovirus sweet potato mild
RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in
RT the centre of evolution in East Africa";
RL J. Gen. Virol. 91(PT 4):1092-1108(2010).
XX
RN [2]
RP 1-7780
RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.;
RT ;
RL Submitted (30-APR-2009) to the EMBL/GenBank/DDBJ databases.
RL Department of Applied Biology, University of Helsinki, PO Box 27
RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland
XX
FH Key Location/Qualifiers
FH
FT source 1. .7780
FT /organism="Sweet potato mild mottle virus"
FT /host="Ipomoea batatas"
FT /isolate="RUK93"
FT /mol_type="genomic RNA"
FT /country="Uganda:Rukungiri"
FT /collection_date="01-Apr-2007"
FT /db_xref="taxon:41459"
FT 5'UTR 1. .139
FT CDS 140. .>5867
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0C4"
FT /protein_id="ACS29487.1"
FT /translation="MGKPKLTYKQCIAKWGKAALEAQNNGSKRSVPVGTHQIAANIFAF
FT YDAKDYHLFAMGKRNGLTPAAEQLRIAIERGTIYKVQYNCHFCPDCDAIVDSDEGWFCE
FT DCDSQFNKRDDNVLDNKNDVARALGGWNAYEDATWASFEAAKADMLEVAPTVGQLEKEI
FT RVIEKSAGKRLTAYEEEMLEELAYKLDVAKMNEEKQETVLEETVFQISNDEFPALEGPQ
FT VEVANGTIEEHTEENAIEVASEAENTVEFEFANGTTDEPISDAAGARVVATPVVALSAT
FT NSRMATGKEKLAEEPKRVMWVTKPKTPAAVPTKPSESAVWIAKPRLASALSIVEPVAKP
FT TVRASSGAINIGAMVCPITVAAIESHSHQNEKLNESLNAQDNDATKEEEPVIKYNITFG
FT SFNYEVSAKGEQVQAAVKLDDMIEGPDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV
FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKSAALRLLKATKVQVFYDGIKDIFEC
FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRRVEEEYLMVPLVPIDQHVHEEHSTIS
FT KAKWEAHESICEGEVNIAKTFDGKPTASKKKFKTKQAPNVANIPLDDFMQELVEICLER
FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHRNKLCLCGGIDREKKI
FT RSSEVRPGWSGVILHRNQVAECDWSKFVFIDDMCVVQGRNLITNKIENALEKKGSNRLK
FT QIQFYASSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC
FT CFRVIKSRRIDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATIINDDDVLRT
FT LGLSGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQTDQQIDRQALHNQVRILHQRNE
FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSNGDFDILRKYQSIHEFFPNIMSR
FT ANKAGMAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDIMEHISGTCLLKNDKTLFSSG
FT CKQGVNGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV
FT GFINEDEMEFYKNQMNQIVLNLGAWPTFDQYLIELRAISLDYPKVRGCPAAIHLVSHVN
FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID
FT LFERHPENIFKICASPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF
FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN
FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLSAQKLFEEANERAYGKQSWNLR
FT VIWGACKEVLYAVTHGVCVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC
FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGDGELYVEQHGKKEEAFLFKICAIF
FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE
FT IEVPNVVLSQDDMTFERWFQHQVQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG
FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG
FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK
FT KKIVKLSATHAGMDCECETRHKVKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV
FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT
FT FNIDAVVDFGEKISPNLSSDERCITLGRQRISRAE"
FT mat_peptide 140. .2413
FT /product="P1 proteinase"
FT mat_peptide 2414. .3775
FT /product="helper component proteinase; HC-Pro"
FT mat_peptide 3776. .4657
FT /product="P3 protein"
FT mat_peptide 4658. .4813
FT /product="6K1 protein"
FT mat_peptide 4814. .>5867
FT /product="cytoplasmic inclusion protein; CI"
FT gap 5868. .5967
FT /estimated_length=unknown
FT CDS <5968. .7473
FT /codon_start=1
FT /product="polyprotein"
FT /note="coding region disrupted by sequencing gap"
FT /db_xref="UniProtKB/TrEMBL:D2T0C5"
FT /protein_id="ACS29488.1"
FT /translation="GNNSGQPSSVVDNTLILMIAMEYAISKVFVTRPEIRYVCNGDDLL
FT INCPRSTANTISEYFKDAFADLSLNYDFDHICDKITSVDFMSHSFMWLEDEQMYIPKLD
FT KERIVAILEWERSDEQFRTRSALNAAFIESFGYEDLMTEIENFASFWAKEHGLENVLME
FT REKVRGLYINEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI
FT TVVQRETQKARIRDQIETLRAQQIVRPSEAQLQPDVTPTQVVTFEPPRVTGFGALWIPP
FT PQRNYMTPAYIEKNKGYVPHSNLIESGLAGESQLTSWFENTCRDYQVSMDVFMSTILPA
FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ
FT AVAQYMNSLQVGKPFTVKGAKTAGYANVQDAWLGIDFLRDTMKLTTKQMEVKHQIIAAN
FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD"
FT mat_peptide <5968. .6564
FT /product="nuclear inclusion body protein; NIb"
FT mat_peptide 6565. .7470
FT /product="coat protein; CP"
FT 3'UTR 7474. .7780
XX
SQ Sequence 7780 BP; 2376 A; 1397 C; 1891 G; 2016 T; 100 other;
fj999765 Length: 7780 19-MAR-2010 Type: N Check: 5822 ..
1 taaataaaaa tgatatagag aaaatttgaa agacaagcgt gaacttagca
51 aacttatttg caactcagtt taatttcaag tactttattt taattttatc
101 gaactgtggt gtccgcttag aaacggatca gacgcagaaa tggggaaacc
151 taaactcacc tacaaacaat gcattgctaa gtggggaaaa gccgcacttg
201 aagcgcagaa caacggatcg aaaaggagtg ttcctgttgg aactcatcaa
251 attgcggcaa acattttcgc gttttacgat gcgaaagact accatctatt
301 tgccatgggc aaaagaaatg gactgactcc agcggctgaa caattgagaa
351 tcgcaattga gcgagggacg atttacaagg tgcagtacaa ctgccacttc
401 tgtcctgatt gtgatgcaat tgtcgattct gatgagggat ggttttgcga
451 ggattgcgac tcgcaattca ataagcgcga cgacaatgtg cttgataaca
501 aaaatgatgt cgcacgcgct cttggcggct ggaatgctta tgaagacgcc
551 acctgggcgt catttgaggc ggctaaggcc gacatgcttg aagtagcacc
601 aactgtgggt caacttgaga aagagatcag ggtcatagaa aagtcagctg
651 gtaaaagact caccgcttat gaggaagaaa tgcttgaaga gttggcctat
701 aaactcgatg tggctaagat gaacgaggaa aaacaggaaa cagtacttga
751 agaaactgtt ttccaaattt ccaatgacga gtttccagct cttgaggggc
801 cacaagttga agttgccaat ggaactattg aggaacatac tgaggaaaac
851 gcgattgagg tcgcgagtga agctgaaaat actgtggagt ttgaatttgc
901 aaatgggact actgatgaac caattagtga tgctgctggt gcacgcgtag
951 ttgcaacacc tgtcgtggct ctaagtgcaa caaactccag gatggcaact
1001 ggcaaggaaa agttggctga agaaccaaag agagttatgt gggttacaaa
1051 gccaaaaacc cctgccgcag ttcctaccaa gccatctgag tcggctgtct
1101 ggattgccaa gccaaggcta gcatccgcgc tttctattgt tgaaccagtc
1151 gctaaaccaa cagtgagagc tagcagtggc gcgatcaaca taggcgctat
1201 ggtgtgtcct atcacggttg cagcaattga atcacatagc catcaaaatg
1251 agaagctcaa tgagtcccta aacgcacaag ataatgatgc aacgaaggaa
1301 gaggaaccag tgatcaaata caatataact tttggttcat ttaattatga
1351 agtgagtgca aaaggggaac aagtgcaagc tgccgtcaaa cttgacgata
1401 tgatagaagg acctgacact gaaccaattc tgatttgcca gacaggaagt
1451 tcccacaaac atgaaaccaa gaaagctgca aaagggcttt ttgttcagga
1501 cagattttcg gtaattggga ataaggttct gtgcaagtca tttcctgcct
1551 tcaagaattt catgaatgag acaagattag gagggattta tagaacaaga
1601 aaaggaagtt acaaaagcgc tgcattgcgt ttattgaagg ccaccaaagt
1651 tcaagtattt tatgatggga taaaggatat ttttgagtgt ccgtattgcc
1701 acgtgagcag taatgagcta gagggcctta atggagacaa ttgcgaaaaa
1751 tgcaaggatc tgttctataa acacattgat gacccaagga gagttgaaga
1801 ggaatatctt atggttcctc tcgtgcccat cgatcagcat gttcatgaag
1851 aacatagcac catcagtaag gctaaatggg aagcgcatga atctatatgt
1901 gaaggagaag tgaacattgc taagactttt gatggcaaac caactgcaag
1951 caagaagaag ttcaaaacta agcaagctcc aaatgttgca aacataccac
2001 ttgatgactt tatgcaagaa ctagttgaaa tctgtcttga gagaaacacc
2051 cctattgaaa tcattggggg tgtgaaatct ttcaacgtgg taaagttaag
2101 gcatactacg agagatatca gcaagtctgg tgaggatgat atgtatccaa
2151 ctgaaaggga gtggttctgc cacaggaata agttatgttt atgtggtggg
2201 attgatcgtg agaagaaaat tagaagttcc gaggtgcgcc caggttggag
2251 tggagtaatc ttacatagga atcaagtggc agaatgcgat tggagcaagt
2301 ttgttttcat tgatgacatg tgcgtggtgc aaggtagaaa cttgatcacg
2351 aataagattg agaatgcact tgaaaagaaa gggtctaata gacttaaaca
2401 gatacaattc tatgcaagtt ctgttatacc caatttcaag gacgaatttg
2451 acagggctag ccgtctaaaa gctgatcatg aaccggatga gtcgtctaac
2501 aatgaactca ttggtaggct agccaaactt gttgcagcag tcattccaaa
2551 aggccactta tattgcaaaa catgttgttt tagggttatc aagagcaggc
2601 gcatagatat agtcaacgcg ctgaataagg ctaagcagcg tggtgaacgg
2651 gatgagttta tttatgacga gctcattaaa ctttttgagt tacaagcgcc
2701 accaccctat aaaattgcaa cgatcatcaa cgatgatgat gtgttgcgta
2751 cactaggatt gagtggagac ctatatagtg ggcgcctaag tctcataatg
2801 caacatttgc aaggattgca tacgtcaata tcaatgcttc accaatcact
2851 tgcaggagct caaactgacc aacaaattga caggcaagca ctccacaacc
2901 aagtgcgaat tttgcatcag agaaatgagg aacacatgcc tttcctaaag
2951 aaagcagttg atgagattca gcttttaaac gcaacagatc aggttgccaa
3001 tgctcgggaa ttatacttgg acactagggc aactagtaat ggagatttcg
3051 acatcttgag aaaataccag agcatacatg aattctttcc caatattatg
3101 agccgggcca ataaagcagg gatggcagtc atcaaatctg agacttcatt
3151 gagcaaagct tttgccctta tgaacagtgc taagtcgatg gacgctattc
3201 atacgcttat aggggaggac atcatggaac atattagtgg tacttgcttg
3251 ctgaagaatg ataaaacact tttctcaagt ggttgcaagc aaggtgttaa
3301 tggtagtaag atgtatggcc ctctttgtcc gaccaagcag catgtgagaa
3351 ttcaccgagt tgaatctaat atgcaaattc ctttaccaac attccacgat
3401 gcaaccgtct gggagttcaa cgaaggttat tgctatgcca atcaatttgc
3451 cataatggtt ggtttcatca atgaggacga aatggagttt tataagaatc
3501 agatgaatca aattgtgttg aacttagggg cttggccgac ttttgatcaa
3551 tacttaattg agctacgagc aatctcgctt gattatccaa aagttagagg
3601 gtgtccagct gctatccatt tagtttccca tgtgaacaag cttatccatg
3651 ttttaggaca atttggaaca ataaatcaag gttggcatgc acttgaagtg
3701 gccactgtag gtgagcttgt ggacttgtgc cataagaaag ttgaaggtga
3751 aatgttaact tataaagttg gtggcatata tgactgggtg actaagaaga
3801 atgctttcat cgatctattt gaacggcatc cagaaaatat attcaagatt
3851 tgtgcatcgc catcagtgtt gtggttattt gctcgcagct gcgaaaagca
3901 tgattttatc aactacatca tggccagaga tcattcacta gtgggtctgt
3951 tcatcaaatt ggaatacgtc ggcaagcatc ttcatatttt ccaaagtgtc
4001 gacgatgttt gtgttgaata cgcagcgtct atgagggaaa tcatcgaaga
4051 gcacgctgat atccatgggc tgcgggattc agtagtggat agaatggttc
4101 atgcatatca caatgaggtg agggaagcaa ataaatatga gctagttgac
4151 agaatccttg aaaaaaacat tggattaatc gcgaaagaaa tttcatcgcg
4201 aaagctcata acaatgtatc atcaagattt gttctcttgg cacgaatggc
4251 agcgtttgaa gttaatgcca cactccttga gtgcgcagaa actcttcgaa
4301 gaggcaaacg agcgcgcata cgggaaacaa tcatggaatt tacgcgtgat
4351 ttggggtgcg tgcaaggaag tgttatatgc agtcacacac ggagtttgtg
4401 taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt agtatatggc
4451 ttctatggta gaacacgagc aatggtgaca agctgggcca gtgaggcctg
4501 gggagctatt tttacgtcgt gtttgagagc attagttgtc atggtggtta
4551 cggcatacat ctcaacttgg atccctaaga ttaggaagat gattaaacgc
4601 gaaaagaaac agtttgagga gcttggggac ggagagttat atgtggagca
4651 acatggcaaa aaggaagagg cgtttttatt caagatttgc gccatttttg
4701 cacttatagc aggtatagtt gactacgagt ggggagcagc tgcatgcgcg
4751 acaatgaata aagttaagag tatatgcact gttcttggat ccgttggaat
4801 tgaaagccat gctaatgaac ctgatgacaa agttgagcag gacttgaagg
4851 aatcccttaa attcacatct tttgagattg aggtgccaaa cgtagtccta
4901 tcacaggatg atatgacttt tgaaaggtgg ttccaacatc aggttcaata
4951 tggcaacgtg tgtgcggacc caatttatag tggtccgtta cgcatgttag
5001 cgattacaga aaattctgcg agagagctag caatgaacat tcgcacatca
5051 ggagaaaccg acttgcgtgt ttatagtggt gttggtgggg gaaagtcaac
5101 aaggttaccc aaggaattaa gcatgtttgg gcatgtgtta atttgtgttc
5151 ccacgagagt tctggcagaa agcttattaa catcattcat ggtactattt
5201 aatatggatg ttaatgtggc ttatcgcgga aggatacata ctggtaacgc
5251 accaatcaca ataatgactt atggttacgc attcaacttc ttggtgcata
5301 aaccaatgga attaaaccga tatgattacg tgttgctaga tgaaattcac
5351 actaatcctg ttgaatttgc gcctttgttc tctttcatta aaaccacgga
5401 tccaaagaag aaaattgtta agttgtcagc aactcatgct ggtatggact
5451 gcgagtgcga gaccaggcac aaggttaagg ttgaaacttt gagcgaaatg
5501 ccaatcgaaa gctgggtttc catgcaaggc tccggagttg ttggcgatgc
5551 gacatctgtt ggagatgtaa ttttagtctt tgttgcatca tttaaggatg
5601 tcgacacatg cgctaatgga ttgagatcta aaggcttcaa agttttgaaa
5651 gttgatagta gaaactttag acgtgatgca gatgtggaca aacagatcca
5701 atcacttggt gaaggaaaga aattcatagt cgccacaaat ataattgaga
5751 atggagtgac attcaacatt gatgctgttg ttgattttgg cgagaaaatt
5801 agccccaatc tctcgagcga tgagcggtgt atcactttgg gaaggcagag
5851 aatatcgcga gcagaaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5951 nnnnnnnnnn nnnnnnnggg aataacagtg ggcagccttc atcggttgtc
6001 gacaacacat taatcttgat gattgccatg gagtatgcga tatcgaaagt
6051 cttcgttaca cgccctgaaa tcagatacgt ttgcaacgga gatgatcttt
6101 taataaattg cccaaggagc accgcaaata ccattagtga gtatttcaag
6151 gatgcgtttg ccgacttaag tttgaattat gactttgatc acatttgtga
6201 taaaattaca agtgttgatt ttatgagtca cagtttcatg tggttggaag
6251 atgagcagat gtacatcccg aagttggaca aggagcggat tgtggcaatt
6301 ttggagtggg agagaagcga cgagcaattc agaacaagga gcgccttaaa
6351 cgcggctttc attgagagtt ttggatatga agatctaatg actgagattg
6401 agaatttcgc atctttttgg gcaaaagagc atggcctcga aaatgtgctg
6451 atggaacgag aaaaggttag aggtttgtac atcaacgaag atttcgatgc
6501 gtcagccttt gaaaagttct acccggaaac attttcgcca tttgatgttt
6551 atgttgaacc acatgcatca acatccaaaa caatcgaaga actgcagcaa
6601 gaaatggagg acttggacgc agacacgaca atcactgtgg ttcagaggga
6651 gacacagaag gcaagaataa gggaccaaat cgagacactt agagcacaac
6701 aaattgtgag accttctgag gcacagctac aacctgacgt gactcccacg
6751 caagttgtca cgtttgagcc accaagagtc actgggtttg gtgctttatg
6801 gattccaccg ccacagagga attacatgac gccagcttac atcgagaaaa
6851 ataaaggcta tgttccacac tcaaacttga ttgaatctgg attagctggt
6901 gaatctcagt tgactagttg gttcgagaac acgtgcaggg attatcaagt
6951 cagtatggat gtcttcatga gcacaatact gccagcatgg attgtcaatt
7001 gcataatcaa tggaacgtcg caggagcgca ctaatgagca tacgtggagg
7051 gctgtgatca tggcaaacat ggaagatcaa gaagtgctct attatcccat
7101 taagcctata attatcaatg ctcaaccaac tctgaggcaa gtgatgcgcc
7151 attttggcga gcaagctgtt gctcaataca tgaatagcct tcaagttgga
7201 aaacctttca cagtgaaagg agccaaaact gctgggtacg ccaatgttca
7251 agatgcctgg ctaggcattg actttcttcg ggacacaatg aagctgacaa
7301 caaagcagat ggaagttaag caccaaatta tcgctgcaaa cgttacaagg
7351 cggaagatcc gtgttttcgc tcttgcagca ccgggagatg gcgatgaatt
7401 agacacagaa aggcacgttg ttgacgatgt agctagaggt cgtcatagtc
7451 tgagaggagc tcaactcgat taaatgagca tgttatcctt aatttcaact
7501 gtgtgttttc attttaataa cgttttatgc tttgtgtttg tctgttgtgg
7551 cacttgaacc aggtacagct ggcaggtgtt tcggcatggt gtggttagac
7601 aattggttcg caccggtagt ctaagaagcg ctgtgtatca cgtggttggt
7651 taattcatag ttacgtgggt taatcaagaa gcgtctatcg cccaaaaggg
7701 taccagaaaa tggttgcgtc attcgtggcg tgattagttt ttggagtttg
7751 gctaggtaac ttgtcgcctt cccaaaagcc