Sequence of DPV Tomato yellow distortion leaf virus
Tomato yellow leaf distortion virus clone EF5N segment DNA-B, complete sequence.
ACC No: FJ999999
Dated: 2012-12-14 | Length: 2589 | CRC: -252738902
ID FJ999999; SV 1; circular; genomic DNA; STD; VRL; 2589 BP.
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AC FJ999999;
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DT 18-JUN-2009 (Rel. 101, Created)
DT 14-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE Tomato yellow leaf distortion virus clone EF5N segment DNA-B, complete
DE sequence.
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KW .
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OS Tomato yellow leaf distortion virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2589
RA Fiallo-Olive E., Hernandez-Zepeda C., Trejo-Saavedra D., Carrillo-Trip J.,
RA Rivera-Bustamante R.F., Martinez-Zubiaur Y.;
RT "Complete genome and pathogenicity of Tomato yellow leaf distortion virus,
RT a bipartite begomovirus infecting tomato in Cuba";
RL Eur. J. Plant Pathol. 134(1):13-21(2012).
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RN [2]
RP 1-2589
RA Fiallo-Olive E., Trejo-Saavedra D., Rivera-Bustamante R.,
RA Martinez-Zubiaur Y.;
RT ;
RL Submitted (05-MAY-2009) to the INSDC.
RL Proteccion de Plantas, Centro Nacional de Sanidad Agropecuaria, Carretera
RL de Tapaste y Autopista Nacional, San Jose de Las Lajas, La Habana 32700,
RL Cuba
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FH Key Location/Qualifiers
FH
FT source 1. .2589
FT /organism="Tomato yellow leaf distortion virus"
FT /segment="DNA-B"
FT /host="tomato"
FT /lab_host="Nicotiana benthamiana"
FT /mol_type="genomic DNA"
FT /country="Cuba"
FT /collection_date="Jan-2007"
FT /clone="EF5N"
FT /note="identical sequence isolated from lab_host Nicotiana
FT tabacum"
FT /db_xref="taxon:649996"
FT gene 415. .1182
FT /gene="bv1"
FT CDS 415. .1182
FT /codon_start=1
FT /gene="bv1"
FT /product="nuclear shuttle protein"
FT /db_xref="GOA:C5J4N5"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR001530"
FT /db_xref="UniProtKB/TrEMBL:C5J4N5"
FT /protein_id="ACR84417.1"
FT /translation="MYPLRSKRGSFFTPRRFYPRNTVLKRSTSSKRHDSKRRLVNSNKP
FT SDEPKMSVQRIHENQYGPDFSMAHNSAVSTYVSYPSLGKSEPNRSRSYIKLKQLRFKGT
FT VKIERVQTDLNMDGSTPKLKSLLHVIVVDRKPHLGPSGCLHTFDELFGARIHSHGNLSV
FT TPSLKDRYYIRHVCKRVLSVEKDTLMVDVEGSISLSNRRFSCWSTFKDLDRDSCKGVYD
FT NISKNALLVYYCWMSDTPSKASTFVSFDLDYVG"
FT gene complement(1243. .2124)
FT /gene="bc1"
FT CDS complement(1243. .2124)
FT /codon_start=1
FT /gene="bc1"
FT /product="movement protein"
FT /db_xref="GOA:C5J4N6"
FT /db_xref="InterPro:IPR000211"
FT /db_xref="UniProtKB/TrEMBL:C5J4N6"
FT /protein_id="ACR84418.1"
FT /translation="MESQLANPPNAFNYIESHRDEYQLSHDLTEIVLQFPSTASQLTAR
FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF
FT SASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDKDVDFNHVDYGKWERKPIRCASMSRLGIRGPIEIRPGESWASRSTIGTGLSEAD
FT SEVENELHPYRHLNRLGTSVMDPGESASIVGAQRAESNITMSMAQLNDLVRTTVQECIN
FT NNCQASKPKSFQ"
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SQ Sequence 2589 BP; 650 A; 567 C; 588 G; 784 T; 0 other;
fj999999 Length: 2589 14-DEC-2012 Type: N Check: 3861 ..
1 accggatggc cgcgctttgg ggtacccccc cgcgcgctct cattggtgcc
51 gtactctctc tcacgcgcgc cgcctctggt gccgcactct cactcgccct
101 cccattggtg tttgtaaaac acgttccttt tcctgccgtt cctttaattc
151 aaattaaagg ttaatacttt tgtcgcgcga tatgctttgg actttgaatt
201 attgtctcgc gacgaattaa tatggcccat tgtacttggt gatggacgtg
251 gctaaatttg ggccgtgcta ctgagtctat ttgcaactaa tgttgaacaa
301 cttgcttata aatgggactg gaatgaaatc ttatggtgta tccgactcag
351 tagtcgacca cgtgtttgta attatcttct aattaatttg tctatccatt
401 attatcttcg gataatgtat cctttgagaa gtaaacgtgg ttcatttttt
451 acgccacgtc gtttttatcc acgtaacact gtcctcaagc gttcaacctc
501 gtcgaagaga catgactcga aacgtcgact tgttaattcc aacaagccca
551 gtgatgagcc caagatgtca gtccaacgca ttcatgagaa tcagtatggg
601 ccagatttct ctatggccca taattcagct gtctcgacgt atgtcagtta
651 tcctagcctg ggaaagtccg aacccaaccg aagcaggtcc tatattaagt
701 tgaaacagct acgtttcaaa gggactgtga agattgaacg tgttcagacg
751 gacctgaaca tggacggttc tacccccaag ttgaagagtc ttctccatgt
801 gattgttgtg gatcgcaaac cccacttggg tccttctgga tgtctacata
851 cgtttgacga gctattcggt gctaggatcc acagtcatgg taacctcagc
901 gttacccctt ccttgaaaga tcgttattac atccgccacg tgtgcaaacg
951 tgtattatct gtcgagaagg atacgcttat ggtagacgtg gaaggatcta
1001 tttcactctc taacaggcgt tttagttgtt ggtctacgtt taaggatctt
1051 gatcgtgatt cgtgcaaggg tgtttatgat aatataagca agaacgccct
1101 actagtttat tactgctgga tgtccgatac gccttcaaag gcatcgacat
1151 ttgtatcatt tgatcttgat tacgttggtt aatgaaataa ataacattta
1201 tccaaagatg attatctata tatgaaaagg aaaatataaa ctttattgaa
1251 atgatttggg cttggaagcc tgacagttat tgttaataca ctcttggaca
1301 gttgtcctaa ccaaatcatt taattgggcc atagacatcg tgatattgga
1351 ctcggctctc tgggccccta caatggaggc agactctccc ggatccataa
1401 cgctggtccc tagcctgttg aggtgcctgt atggatggag ctcgttctcc
1451 acctctgaat ccgcctctga caggcctgtt cctatagtac tcctggaagc
1501 ccatgactct ccaggcctta tctcaattgg gcctcttatt ccaagccttg
1551 acatggacgc gcatctaatg ggcttccttt cccatttccc gtagtcgaca
1601 tggttgaagt ccacatcttt atcggtgaac tgtttcgaca ggatctttac
1651 tgtcggtgct cggaatggga tgtcgacgga atgcttcgcc gttgatagtt
1701 tcagtttccc tttgaacttg gcgaagtggg tcctctgatg aacattcgta
1751 tcggaaaccc tgtagtacaa cttccatgga attgggtctt tcaaggagaa
1801 gaacgaagcc gagaaatagt ggagatctat gttgcatctg atcggaaagg
1851 tccacgacgc ctgtaatgac tcgttgtctg tcatcctctt gtcgtggatc
1901 tccacaatta ccgacccggt tgcgttaatc ggcacttgtt gcctgtactc
1951 tatgacgcag tgatcgatct tcatgcagct acgactgagt ctagctgtca
2001 actgagacgc cgtcgacgga aattgcagta cgatctcagt taagtcatgg
2051 gaaagctggt actcgtcacg gtgtgactct atgtagttga aagcgttcgg
2101 aggattagct aactgagact ccatatgaag aacaatggcc gcgcagcgga
2151 atcgcttgtt gaacttcaac tggttatgaa aattctggga attttgttag
2201 aacaagaaaa gaagctgttt gagaaagacg ataatggcga tttagaaatt
2251 ggctgaataa acctactttg acggtggtct gtggaactat tgagcgtaat
2301 taagtgaata tgaaactaaa ttcaatattt cagccaacga ttcactaatt
2351 ttttctgggt tgtatgttta tgagaagttg tacatgttga agttgatatg
2401 aggatgaact agcttatata gaaacccaga actcgttcag tggcattttt
2451 gtaataagag gggtgtaccc cgattgagct ctctcaaaac ttgctctatg
2501 aattggggtc tggggtctca tttatactag aaggctctat agaactctca
2551 atctcgttcg cacacgtggc ggccatccgc tataatatt