Sequence of DPV Malva vein clearing virus

Malva vein clearing virus partial polyprotein precursor, isolate DS-Ba-01

ACC No: FM212972

Dated: 2008-11-11 | Length: 1832 | CRC: 1442054376

                
ID   FM212972; SV 1; linear; genomic RNA; STD; VRL; 1832 BP.
XX
AC   FM212972;
XX
DT   11-NOV-2008 (Rel. 97, Created)
DT   11-NOV-2008 (Rel. 97, Last updated, Version 1)
XX
DE   Malva vein clearing virus partial polyprotein precursor, isolate DS-Ba-01
XX
KW   .
XX
OS   Malva vein clearing virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1832
RA   Parrella G.;
RT   ;
RL   Submitted (03-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL   Parrella G., Istituto per la Protezione delle Piante, CNR- National
RL   Research Council, Via Universita 133 - Portici (NA), 80055, ITALY.
XX
RN   [2]
RA   Parrella G.;
RT   "Molecular characterization of Malva vein clearing virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1832
FT                   /organism="Malva vein clearing virus"
FT                   /host="Malva parviflora"
FT                   /isolate="DS-Ba-01"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy:Apulia, Bari"
FT                   /collected_by="Giuseppe Parrella"
FT                   /db_xref="taxon:565624"
FT   CDS             <1. .1542
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="polyprotein precursor"
FT                   /protein_id="CAR82287.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAMKYALLSEGFKEDKHDSMCRYFVNG
FT                   DDLLIAIEPKYEHILDTFTDHFKNLGLKYDFSTRTRNKSDLWFMSHMGMNRDGVFIPKL
FT                   EKERIVSILEWNRSKEPVHRLEAICASMIEAWGYDDLVHEIRKFYSWVLEQAPYNALAA
FT                   EGKAPYIAETALRKLYMDIDPTESELEKYVQALNEIEADESLFVYHQMDEKLNAGVSTP
FT                   PKSDRRPGKETMPSDQQAQEEARAKDTPPNADKLNIGGEMIKSQGPGKVANRPDKDINV
FT                   GTTRVVSAPRLTGMVAKMRVPKFKGKNAMHMGHLMTYNPVQTDLSNARSTQRQFEQWFE
FT                   GVRNEYGVTEEQMTIIANGLMVWCIENGTSPNINGVWTMMDGEEQVEYPLRPVMDHAAP
FT                   TFRQIMAHFSDVAEAYIEKRNYHGNYMPRWGRQRNIRDRSLARYCFDFYEVTTSTPIRA
FT                   VEAHNQMKAAALRGETNRLFGLDGKVTTQEENTERHTAEDANPNLHTLLGMRGVQ"
FT   mat_peptide     <1. .630
FT                   /product="nuclear inclusion protein (NIb)"
FT   mat_peptide     631. .1539
FT                   /product="coat protein (CP)"
FT   3'UTR           1543. .1832
XX
SQ   Sequence 1832 BP; 597 A; 341 C; 425 G; 469 T; 0 other;

fm212972 Length: 1832  11-NOV-2008  Type: N  Check: 1338  ..

       1  gggaacaaca gtgggcaacc atcgacagtt gtcgacaaca ctttaatggt
      51  gatattggcc atgaaatatg ccttactctc tgaaggtttc aaagaagata
     101  agcacgacag catgtgcaga tattttgtaa acggggacga tttgttgata
     151  gcaattgaac ccaaatatga gcacatactt gatacattca cagatcactt
     201  taaaaattta ggtctgaaat atgacttttc aacacgaaca agaaataaga
     251  gtgatttgtg gtttatgtca cacatgggca tgaataggga tggtgtcttc
     301  ataccaaagc tcgaaaaaga aagaattgtt tcaatcttgg aatggaaccg
     351  ttcaaaagag cccgttcata ggcttgaagc aatttgtgca tcaatgattg
     401  aggcttgggg ttatgacgat cttgttcatg aaatacgtaa attttactca
     451  tgggttttag aacaagcacc atacaatgca ttggcggctg aaggcaaagc
     501  accatacata gctgagacag ctctgcgaaa actatacatg gacattgatc
     551  ctactgaatc agagctcgaa aagtacgttc aggccttgaa tgaaattgaa
     601  gcggatgaga gtctttttgt ttatcatcag atggatgaaa agttaaatgc
     651  tggtgtttca acaccaccaa agagcgaccg gaggccagga aaagagacta
     701  tgccatcaga tcaacaagct caggaagagg cgagagcaaa ggacactcct
     751  ccaaacgctg ataagttaaa catcggagga gaaatgataa agtcgcaagg
     801  accaggaaaa gttgccaata gaccagacaa ggatataaat gttggcacaa
     851  cgagagtcgt atccgcacca cgactcaccg gaatggttgc aaaaatgaga
     901  gtgcccaagt ttaaagggaa aaatgctatg cacatgggac atctcatgac
     951  ttacaatccc gttcaaacgg atttatctaa tgcacgctca acacaaagac
    1001  aatttgaaca gtggttcgaa ggagtgcgga atgaatatgg tgtcactgaa
    1051  gagcaaatga ccatcatagc caatggatta atggtttggt gtatcgaaaa
    1101  tggaacatca ccaaatatca atggagtttg gactatgatg gatggtgaag
    1151  agcaagttga gtatccatta cgaccagtta tggatcatgc agcaccaaca
    1201  tttagacaga taatggcaca ttttagtgac gttgccgaag cgtatatcga
    1251  aaagagaaat taccacggta attacatgcc acgctggggt aggcaacgga
    1301  acatcagaga ccgtagttta gcacgctatt gttttgactt ctatgaagtc
    1351  acaactagta cgccgattcg agcagttgaa gctcacaatc aaatgaaagc
    1401  agctgcatta cgcggcgaaa cgaatagatt gttcggattg gatggaaagg
    1451  tcacaacaca ggaggagaac acggagagac acacagcaga ggatgctaat
    1501  ccaaatctgc atacacttct tggcatgaga ggtgttcagt gattgtttcg
    1551  gtataagagt aacttatata gatagtactt ataggtatgt atgtaacgag
    1601  taagtacgtt tatgttttga atgacttgcc ctatatgttt catagcgaga
    1651  gtctctctcc cgaacatatc tggtgtgcca ttagttgcgt ttactttgcc
    1701  cgtatgaggc tcccctgttg cattaaagtt tagttcgtgc taataaactt
    1751  ttttgcccga atctacttgt gatgttcttt gacattaagt gagtcttaac
    1801  tcggtcaact tgcatcccag ctagcctagg ac