Sequence of DPV Tobacco bushy top virus
Tobacco bushy top virus complete genome, isolate YLLi
ACC No: FM242699
Dated: 2009-10-12 | Length: 4152 | CRC: -686703241
ID FM242699; SV 1; linear; genomic RNA; STD; VRL; 4152 BP.
XX
AC FM242699;
XX
DT 12-OCT-2009 (Rel. 102, Created)
DT 12-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE Tobacco bushy top virus complete genome, isolate YLLi
XX
KW complete genome.
XX
OS Tobacco bushy top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-4152
RA Li F.;
RT ;
RL Submitted (10-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Li F., Department of Phytopathology, Yunnan Agricultural University, Key
RL Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan
RL Province, CHINA.
XX
RN [2]
RA Li F., Wei W., Chen R.H., Mo X.;
RT "Complete nucleotide sequence and genome organization of YLLi isolate of
RT tobacco bushy top virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4152
FT /organism="Tobacco bushy top virus"
FT /isolate="YLLi"
FT /mol_type="genomic RNA"
FT /country="China:Yunnan, Baoshan, Longling"
FT /db_xref="taxon:184020"
FT 5'UTR 1. .10
FT CDS 11. .958
FT /product="hypothetical protein"
FT /note="ORF1"
FT /protein_id="CAR85732.1"
FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT
FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAAKCPPEDPTPASPQEPQPV
FT PLAESSECSSQDAERDALDEIWGLPTPVPHPLPKYFERRYQALARTCQKDYSNWQIVPY
FT TGGPRELREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRFTKMAGEVKGRLSAPTRE
FT PSPTCYGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA
FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC"
FT CDS 934. .2607
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2"
FT /protein_id="CAR85733.1"
FT /translation="MWAQGFLLGDVVARRGVETKVKTKIHPKIRVLRAARPRPVERVSY
FT QIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGSFDKINISEIKAFR
FT VQPWTLEEVVESYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP
FT RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIVAKKWKCFS
FT DPVCVGLDASRFDQHVSCDALQFTHSVYKRFVKGREVNKLLSWMYKNHALGSAKDGFVK
FT YEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDCIVIFDRQYLSTFQ
FT DAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW
FT EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM
FT DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD
FT SLPPRHFNNYFQDVGIGGSSSDYVVPGAHEFEPGTLWTQC"
FT CDS 2757. .3470
FT /product="hypothetical protein"
FT /note="ORF3"
FT /protein_id="CAR85734.1"
FT /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRTNPPPG
FT RKQGGNDPTAATQKSRKNRQRPETVPPHKTHGGTFIHREDCGGVHAPHTGRCWRGGRNL
FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL
FT RRRREPVQPVHNVGAEDRVRSAQLSDEAPQSDADLQTSGEGQSVLPNPNSGGTEKCNVE
FT SVCNNCDRAPTTNKW"
FT CDS 2773. .3507
FT /product="hypothetical protein"
FT /note="ORF4"
FT /protein_id="CAR85735.1"
FT /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV
FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM
FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS
FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT
FT ATGLPPPTSGEQDMEVVSHPPG"
FT 3'UTR 3508. .4152
XX
SQ Sequence 4152 BP; 1000 A; 1084 C; 1203 G; 865 T; 0 other;
fm242699 Length: 4152 12-OCT-2009 Type: N Check: 9477 ..
1 aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga
51 atttcaagcc ctctaagggc gtaatgtctc gggaggagct ccgtgaagct
101 ttcgatccca cttgggagct cctcatcaca caggctcgtg tcaccactga
151 ggtgtcacgc cagtgtgagg attggtacac tctagctgta cccaccacct
201 accgcttgcc agagttggcg gtagaagagg ctgtgcgtga aaagaacata
251 gcgcgcgagg tggcggccaa gtgcccccct gaggacccga ctcctgcttc
301 cccgcaagag ccacagcctg tccccttggc ggagagctcc gagtgctcaa
351 gccaggatgc cgagcgtgat gcgctcgatg agatatgggg gctccccact
401 cccgtgccac atcctctgcc caagtacttc gagcggcgtt accaggcgct
451 ggctcggacc tgccagaagg actactccaa ctggcagatt gtaccctaca
501 cgggtgggcc acgcgagcta agagaggagg acgtgctacc aatggccacg
551 ggggtcatac ccttgccacc acccccccct aaggcttctg tgattggagc
601 agtcttgggg ctgattaccc gcttcaccaa gatggcgggg gaagtgaagg
651 gcaggctgag cgcaccgacg cgggagccct cgcccacttg ctacggtcta
701 gagcaggtgg ctggtgagcc catgggctac atgaatgcac actctgtagc
751 catggagttg cgggctaggt acggagttca gcccgccaca gctgcgaact
801 tgcagctcgg aaaccgggtg gccagggaaa tcctggaaaa acagtgcggg
851 gccacccgtg acatggtgtt catactcggg cacctcgcca ccaccttgtg
901 gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt
951 tttgctaggg gatgtggtcg ctcggagggg tgtagaaact aaagtgaaga
1001 cgaaaatcca ccccaaaatc cgagtgctta gggcggcccg tccccggccc
1051 gtagaaagag tgtcgtacca aatcgacgtg gtgcggccct gtgctgactt
1101 tggagtccac aacaactccc tcaacaattt agtgcgaggg gttaacgagc
1151 gggtgttcta cacagaccac aagaggaaag agccccgcag accttcagct
1201 ggtagttttg acaagatcaa catcagcgaa ataaaagcgt tcagagtcca
1251 gccgtggact ctcgaggagg tcgttgagag ctacacgggt agccagaggg
1301 tgcggtatgg acaagctgtt gaatccttag cagtaacgcc cctctcacga
1351 aacgacgccc gggtcaaaac atttgtaaag gcggaaaaga taaacttcac
1401 cgccaagcct gacccggccc ctcgtgtgat ccagccgcgg gatccaaggt
1451 tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctactatat
1501 aagcagctgg gtaagcttta ccagttcccg tgcatcgcta aaggctttaa
1551 cgccgtggag accggagaga tagtagccaa gaagtggaag tgcttcagtg
1601 accctgtctg tgtgggttta gatgcctccc ggtttgacca gcatgtgtca
1651 tgcgatgcac tacagttcac ccatagcgtg tacaaacggt tcgtgaaggg
1701 cagggaagtg aacaagttgc tttcctggat gtacaagaac cacgctttgg
1751 gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ttgtcggatg
1801 agtggggaca tggatacagc cttagggaat tgtgtcctga tggttctcat
1851 gactaggcag ctatgcaaga acctctccat accgcacgag ctgatgaaca
1901 acggcgacga ctgcatagtt atatttgaca ggcagtacct gtccaccttt
1951 caggatgcag ttgagccttg gtttagggaa ctagggttta caatgaaggt
2001 cgaggagcca gtctaccatc tcgaacgagt agacttttgc cagacccgtc
2051 ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata
2101 gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg
2151 gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac
2201 acaacagctt cttgagatgg ctcctgagat caggagagag caaccctgat
2251 ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat
2301 gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca
2351 gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag
2401 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag
2451 agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccgccgcggc
2501 actttaataa ttacttccag gatgttggaa taggggggag tagcagtgac
2551 tacgttgtcc cgggggccca tgagttcgaa ccggggacgt tgtggacaca
2601 atgctagtcg atcaagttag ccaggcatat ggttgcaagc gctggggact
2651 tagtccataa agccactggt aaagagcctc cagtaggcag gcccgccttg
2701 atgagtatca acgagtggac acccgggtag ccgcggacaa tgcccgacgg
2751 gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata
2801 cgaaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag
2851 ctcgaggaat caaacctcgg cgtactaacc ccccaccggg ccgaaaacaa
2901 ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca
2951 gcgtcctgaa acggttccgc cccacaaaac acacgggggg acttttattc
3001 atagagaaga ttgtggtggt gttcacgccc cacataccgg acgatgctgg
3051 cggggaggta gaaatctggg tccacgacaa catgctacca cacctaaaca
3101 gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata
3151 gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc
3201 gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg
3251 caggcgcgag cccgttcagc ctgtacataa tgtgggagcc gaagatagag
3301 tgcgtagcgc acaactatct gatgaggccc cccaaagcga tgccgatttg
3351 cagacatctg gtgaaggaca gtctgtcctc cctaacccta actcaggggg
3401 cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc
3451 ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc
3501 aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag
3551 accgttagcc actacgctag acagtgcgac aactgaggtc gtctatgacc
3601 cacagggtgc catcctgtgc aatttctaac ccttggcaag ggtgatccta
3651 gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga
3701 gtggttgata gacctctgtg taaggaaaca ggtgtgagac cgggtcctgg
3751 gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttctggggta
3801 accccaccgc cgacgtatca cctcacacgc tgttgaccga caagccgggg
3851 tattggaacc gcaccactct ggaggttccc tctccttatg aggtggaggt
3901 acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc
3951 cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc
4001 cagcataaac caagtagcaa gtggacgttg ctacctcgag cctagagtca
4051 tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt
4101 tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc
4151 cc