Sequence of DPV Tobacco bushy top virus
Tobacco bushy top virus complete genome, isolate YWDu
ACC No: FM242700
Dated: 2009-10-12 | Length: 4152 | CRC: -594833949
ID FM242700; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC FM242700; XX DT 12-OCT-2009 (Rel. 102, Created) DT 12-OCT-2009 (Rel. 102, Last updated, Version 1) XX DE Tobacco bushy top virus complete genome, isolate YWDu XX KW complete genome. XX OS Tobacco bushy top virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus. XX RN [1] RP 1-4152 RA Li F.; RT ; RL Submitted (10-OCT-2008) to the EMBL/GenBank/DDBJ databases. RL Li F., Department of Phytopathology, Yunnan Agricultural University, Key RL Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan RL Province, CHINA. XX RN [2] RA Li F., Wei W., Chen R.H., Wu D.; RT "Complete nucleotide sequence and genome organization of YWDu isolate of RT tobacco bushy top virus"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1. .4152 FT /organism="Tobacco bushy top virus" FT /isolate="YWDu" FT /mol_type="genomic RNA" FT /country="China:Yunnan, Dali, Weishan" FT /db_xref="taxon:184020" FT 5'UTR 1. .10 FT CDS 11. .958 FT /product="hypothetical protein" FT /note="ORF1" FT /protein_id="CAR85736.1" FT /translation="MEFMNNVKRLLTMDFRPAKGVATREELRRAYDPTWELLITQARVT FT SEVARQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVADRCLPDDPSPVAAQGPSPA FT CLAESSTDSSTDAEPNGADEILGLPRPDTQFLPPWVERRYKALARHCPKDYTNWQIIPY FT SGGPRILTEEDVLPVAEGVILLPPPPSKPTVLDTLRGLITRLSRVAGGVRSRPSTTRKE FT PTAICVGVEQVAGEPMAYMNAHSVAMELRARYGVQPSTAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTVVDLALQCGPKDFC" FT CDS 934. .2607 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /protein_id="CAR85737.1" FT /translation="MWAQGFLLGDVVARRGVETKVKTNIHPKIRVLRAARPRPVERVSY FT QIDVVRPCADFGVHNNSLNNLIRGVNERVFYTDHKRKEPRRPSAGSFDKIDTSEIRAFR FT VQPWTLEEVVNSYSGSQKVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP FT RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIIAKKWKCFG FT DPVCVGLDASRFDQHVSCDALRFTHSIYKRFVKGREVNKLLSWMYRNHALGSAKDGFVK FT YEVEGCRMSGDMDTALGNCVLMVMMTRQLCKNLSIPHELMNNGDDCIVIFDRRHLTTFR FT NAVEPFFQELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW FT EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM FT DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD FT SLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC" FT CDS 2757. .3470 FT /product="hypothetical protein" FT /note="ORF3" FT /protein_id="CAR85738.1" FT /translation="MSTIINVNTHPQGRYGRGAAQRSIRGSDVKGARGIKPRRSNPPSG FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREGCGGVHAPHPGRCWRRGRNL FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL FT RRRREPVQPVHNVGTEDRVRSAQLSDEAPQSNANLQTSGEGQSVLPNPDSGGTEKCNVE FT SVCNNCDRAPTTNKW" FT CDS 2773. .3507 FT /product="hypothetical protein" FT /note="ORF4" FT /protein_id="CAR85739.1" FT /translation="MSTLIHKADTEEELLNALYGEVTLRELEESNLGVLTPHRAENKVV FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKVVVVFTPHIPDDAGGEVEILVHDNM FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT FT ATGLPPPTSGEQDMEVVSHPPG" FT 3'UTR 3508. .4152 XX SQ Sequence 4152 BP; 996 A; 1086 C; 1193 G; 877 T; 0 other; fm242700 Length: 4152 12-OCT-2009 Type: N Check: 1429 .. 1 aggttacgat atggagttca tgaacaacgt caagcgattg ctgacaatgg 51 atttcaggcc cgcaaagggc gtagcgactc gtgaggagct ccgtagagct 101 tatgatccca cgtgggagct cctcatcact caagcccgag tcacgtctga 151 agtggctcgg caatgcgagg attggtacac cctagctgtg ccaaccacct 201 accgccttcc agagttggcg gtggaagagg cagtgcgcga aaagtctata 251 gcgcgtgagg tggcagatcg gtgcctccct gatgacccgt cccctgtcgc 301 cgcgcagggg ccgtcgcctg cctgcctggc tgagagctca acagactcca 351 gcacagatgc cgagcccaat ggggccgacg agattctggg gctacctagg 401 ccagacaccc agttcttacc accgtgggtt gagaggcgtt acaaagcgtt 451 ggctcgccac tgcccgaagg attataccaa ctggcagatc ataccatact 501 ccggtggccc acgcattctc actgaagagg atgtgttgcc tgttgcggaa 551 ggcgtgatcc ttctgccccc gcccccatca aagcctacag tactggacac 601 gttgcgggga ttgattaccc gcctctctag agtggcaggg ggggtgagga 651 gtaggccgag caccacacga aaggagccca ctgccatctg cgttggagtc 701 gagcaggtgg ccggcgaacc catggcgtac atgaatgccc actccgtagc 751 catggagttg cgggcgaggt atggggttca gccctctaca gctgctaacc 801 tgcagcttgg aaaccgggtg gccagggaga tcctggaaaa gcaatgcgga 851 gccacccgtg acatggtgtt catcttgggg cacctcgcca ccaccttgtg 901 gttcactccc accgtggtgg acttggccct ccaatgtggg cccaaggatt 951 tttgctaggg gacgtagtcg ctcggagggg tgttgaaaca aaagtgaaaa 1001 ccaatatcca ccccaagatc cgagtgctca gagcggcacg cccccgaccc 1051 gtagaaagag tgtcgtacca aatcgacgtg gtacggccct gcgctgactt 1101 tggtgtccac aacaactccc ttaataattt gatacgggga gttaatgagc 1151 gggtgttcta cacagaccac aagaggaaag agccccgcag gccttcagct 1201 ggtagttttg acaagattga caccagcgaa attagagcat tcagggttca 1251 accgtggacc ctcgaggagg tcgtcaatag ctactcaggt agccagaagg 1301 tgaggtatgg ccaggctgtc gagtcgttag ccgtcacgcc cctctctaga 1351 aacgatgccc gggtcaaaac gtttgttaag gcagaaaaga tcaactttac 1401 cgccaagccc gacccggccc ctcgcgtaat ccagccgcgg gatccaaggt 1451 tcaatgcttg ctttgctaaa tatacaaagc ccttggaacc cctattgtac 1501 aagcagctgg gcaagctcta ccagttcccg tgcatcgcaa agggcttcaa 1551 tgccgtagaa accggtgaga taatagctaa gaagtggaag tgctttggcg 1601 accctgtctg tgtgggttta gacgcctccc ggtttgacca acatgtgtca 1651 tgcgatgcac tacggttcac ccacagcatt tacaagagat tcgtcaaggg 1701 cagggaagtt aacaaattac tttcctggat gtataggaat catgctttgg 1751 gtagtgcgaa ggacggattc gtcaagtatg aggtggaggg atgccgcatg 1801 agcggagaca tggacactgc cttgggcaac tgcgtcctga tggtcatgat 1851 gaccaggcag ttatgcaaaa acctctctat accgcacgaa ctgatgaata 1901 atggggatga ctgcatcgtg atatttgaca ggcgtcactt gactaccttt 1951 cggaatgcag ttgaaccatt ctttcaggaa ctgggtttta cgatgaaggt 2001 cgaggagccg gtctaccacc ttgaacgagt agacttttgc cagacccgcc 2051 ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata 2101 gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg 2151 gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac 2201 acaacagctt cttgagatgg ctcctgagat caggtgagag caaccctgat 2251 ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat 2301 gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca 2351 gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag 2401 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag 2451 agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccaccgcggc 2501 actttaatga ttacttccag gatgttggaa taggggggag tagcagtgat 2551 tacgttgtcc cggggaccca cgagttcgaa ccggggacgt tgtggacaca 2601 atgctagtca attgagtcag ccaggcatat ggttgcaagc gctggggact 2651 tagtccataa aaccactggt aaagagcctc cagtaggcag gcccgccttg 2701 atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg 2751 gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata 2801 cggaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag 2851 ctcgaggaat caaacctcgg cgttctaacc ccccatcggg ccgaaaacaa 2901 ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca 2951 gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc 3001 atagagaagg ttgtggtggt gttcacgccc cacatcccgg acgatgctgg 3051 cggagaggta gaaatcttgg tccacgacaa catgctacca cacctaaaca 3101 gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata 3151 gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc 3201 gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg 3251 caggcgcgag cccgttcagc ctgtacataa tgtgggaacc gaagatagag 3301 tgcgtagcgc acaactatct gatgaggccc cccaaagcaa tgccaatttg 3351 cagacatctg gtgaaggaca gtctgtcctc cctaaccctg actcaggggg 3401 cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc 3451 ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc 3501 aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag 3551 accgttagcc actacgccag acagtgcgat aactgaggtc gtctatgacc 3601 cacagggtgc catcctgtgc aatttccaac ccttggcagg ggtgatccta 3651 gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga 3701 gtggttgata gacctctgtg taaggaaaca ggtgtgagac tggatcctgg 3751 gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttcgggggta 3801 accccaccgc cgacgtatca cctcacacgc tgttggccga taagccgagg 3851 tgttggaacc gcaccactct ggaggttccc tctccttatg aggtggaggc 3901 acagcacgcc ttaagtgtct gcgatccggc gttcacgtgc cggtggtccc 3951 cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc 4001 cagcagaaac caagtagcaa atggacgctg ctacctcgag cctagagtca 4051 tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt 4101 tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc 4151 cc