Sequence of DPV Tobacco bushy top virus

Tobacco bushy top virus complete genome, isolate YWDu

ACC No: FM242700

Dated: 2009-10-12 | Length: 4152 | CRC: -594833949

                
ID   FM242700; SV 1; linear; genomic RNA; STD; VRL; 4152 BP.
XX
AC   FM242700;
XX
DT   12-OCT-2009 (Rel. 102, Created)
DT   12-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Tobacco bushy top virus complete genome, isolate YWDu
XX
KW   complete genome.
XX
OS   Tobacco bushy top virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN   [1]
RP   1-4152
RA   Li F.;
RT   ;
RL   Submitted (10-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL   Li F., Department of Phytopathology, Yunnan Agricultural University, Key
RL   Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan
RL   Province, CHINA.
XX
RN   [2]
RA   Li F., Wei W., Chen R.H., Wu D.;
RT   "Complete nucleotide sequence and genome organization of YWDu isolate of
RT   tobacco bushy top virus";
RL   Unpublished.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4152
FT                   /organism="Tobacco bushy top virus"
FT                   /isolate="YWDu"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan, Dali, Weishan"
FT                   /db_xref="taxon:184020"
FT   5'UTR           1. .10
FT   CDS             11. .958
FT                   /product="hypothetical protein"
FT                   /note="ORF1"
FT                   /protein_id="CAR85736.1"
FT                   /translation="MEFMNNVKRLLTMDFRPAKGVATREELRRAYDPTWELLITQARVT
FT                   SEVARQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVADRCLPDDPSPVAAQGPSPA
FT                   CLAESSTDSSTDAEPNGADEILGLPRPDTQFLPPWVERRYKALARHCPKDYTNWQIIPY
FT                   SGGPRILTEEDVLPVAEGVILLPPPPSKPTVLDTLRGLITRLSRVAGGVRSRPSTTRKE
FT                   PTAICVGVEQVAGEPMAYMNAHSVAMELRARYGVQPSTAANLQLGNRVAREILEKQCGA
FT                   TRDMVFILGHLATTLWFTPTVVDLALQCGPKDFC"
FT   CDS             934. .2607
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF2"
FT                   /protein_id="CAR85737.1"
FT                   /translation="MWAQGFLLGDVVARRGVETKVKTNIHPKIRVLRAARPRPVERVSY
FT                   QIDVVRPCADFGVHNNSLNNLIRGVNERVFYTDHKRKEPRRPSAGSFDKIDTSEIRAFR
FT                   VQPWTLEEVVNSYSGSQKVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP
FT                   RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIIAKKWKCFG
FT                   DPVCVGLDASRFDQHVSCDALRFTHSIYKRFVKGREVNKLLSWMYRNHALGSAKDGFVK
FT                   YEVEGCRMSGDMDTALGNCVLMVMMTRQLCKNLSIPHELMNNGDDCIVIFDRRHLTTFR
FT                   NAVEPFFQELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW
FT                   EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM
FT                   DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD
FT                   SLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC"
FT   CDS             2757. .3470
FT                   /product="hypothetical protein"
FT                   /note="ORF3"
FT                   /protein_id="CAR85738.1"
FT                   /translation="MSTIINVNTHPQGRYGRGAAQRSIRGSDVKGARGIKPRRSNPPSG
FT                   RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREGCGGVHAPHPGRCWRRGRNL
FT                   GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL
FT                   RRRREPVQPVHNVGTEDRVRSAQLSDEAPQSNANLQTSGEGQSVLPNPDSGGTEKCNVE
FT                   SVCNNCDRAPTTNKW"
FT   CDS             2773. .3507
FT                   /product="hypothetical protein"
FT                   /note="ORF4"
FT                   /protein_id="CAR85739.1"
FT                   /translation="MSTLIHKADTEEELLNALYGEVTLRELEESNLGVLTPHRAENKVV
FT                   MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKVVVVFTPHIPDDAGGEVEILVHDNM
FT                   LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS
FT                   PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT
FT                   ATGLPPPTSGEQDMEVVSHPPG"
FT   3'UTR           3508. .4152
XX
SQ   Sequence 4152 BP; 996 A; 1086 C; 1193 G; 877 T; 0 other;

fm242700 Length: 4152  12-OCT-2009  Type: N  Check: 1429  ..

       1  aggttacgat atggagttca tgaacaacgt caagcgattg ctgacaatgg
      51  atttcaggcc cgcaaagggc gtagcgactc gtgaggagct ccgtagagct
     101  tatgatccca cgtgggagct cctcatcact caagcccgag tcacgtctga
     151  agtggctcgg caatgcgagg attggtacac cctagctgtg ccaaccacct
     201  accgccttcc agagttggcg gtggaagagg cagtgcgcga aaagtctata
     251  gcgcgtgagg tggcagatcg gtgcctccct gatgacccgt cccctgtcgc
     301  cgcgcagggg ccgtcgcctg cctgcctggc tgagagctca acagactcca
     351  gcacagatgc cgagcccaat ggggccgacg agattctggg gctacctagg
     401  ccagacaccc agttcttacc accgtgggtt gagaggcgtt acaaagcgtt
     451  ggctcgccac tgcccgaagg attataccaa ctggcagatc ataccatact
     501  ccggtggccc acgcattctc actgaagagg atgtgttgcc tgttgcggaa
     551  ggcgtgatcc ttctgccccc gcccccatca aagcctacag tactggacac
     601  gttgcgggga ttgattaccc gcctctctag agtggcaggg ggggtgagga
     651  gtaggccgag caccacacga aaggagccca ctgccatctg cgttggagtc
     701  gagcaggtgg ccggcgaacc catggcgtac atgaatgccc actccgtagc
     751  catggagttg cgggcgaggt atggggttca gccctctaca gctgctaacc
     801  tgcagcttgg aaaccgggtg gccagggaga tcctggaaaa gcaatgcgga
     851  gccacccgtg acatggtgtt catcttgggg cacctcgcca ccaccttgtg
     901  gttcactccc accgtggtgg acttggccct ccaatgtggg cccaaggatt
     951  tttgctaggg gacgtagtcg ctcggagggg tgttgaaaca aaagtgaaaa
    1001  ccaatatcca ccccaagatc cgagtgctca gagcggcacg cccccgaccc
    1051  gtagaaagag tgtcgtacca aatcgacgtg gtacggccct gcgctgactt
    1101  tggtgtccac aacaactccc ttaataattt gatacgggga gttaatgagc
    1151  gggtgttcta cacagaccac aagaggaaag agccccgcag gccttcagct
    1201  ggtagttttg acaagattga caccagcgaa attagagcat tcagggttca
    1251  accgtggacc ctcgaggagg tcgtcaatag ctactcaggt agccagaagg
    1301  tgaggtatgg ccaggctgtc gagtcgttag ccgtcacgcc cctctctaga
    1351  aacgatgccc gggtcaaaac gtttgttaag gcagaaaaga tcaactttac
    1401  cgccaagccc gacccggccc ctcgcgtaat ccagccgcgg gatccaaggt
    1451  tcaatgcttg ctttgctaaa tatacaaagc ccttggaacc cctattgtac
    1501  aagcagctgg gcaagctcta ccagttcccg tgcatcgcaa agggcttcaa
    1551  tgccgtagaa accggtgaga taatagctaa gaagtggaag tgctttggcg
    1601  accctgtctg tgtgggttta gacgcctccc ggtttgacca acatgtgtca
    1651  tgcgatgcac tacggttcac ccacagcatt tacaagagat tcgtcaaggg
    1701  cagggaagtt aacaaattac tttcctggat gtataggaat catgctttgg
    1751  gtagtgcgaa ggacggattc gtcaagtatg aggtggaggg atgccgcatg
    1801  agcggagaca tggacactgc cttgggcaac tgcgtcctga tggtcatgat
    1851  gaccaggcag ttatgcaaaa acctctctat accgcacgaa ctgatgaata
    1901  atggggatga ctgcatcgtg atatttgaca ggcgtcactt gactaccttt
    1951  cggaatgcag ttgaaccatt ctttcaggaa ctgggtttta cgatgaaggt
    2001  cgaggagccg gtctaccacc ttgaacgagt agacttttgc cagacccgcc
    2051  ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata
    2101  gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg
    2151  gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac
    2201  acaacagctt cttgagatgg ctcctgagat caggtgagag caaccctgat
    2251  ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat
    2301  gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca
    2351  gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag
    2401  cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag
    2451  agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccaccgcggc
    2501  actttaatga ttacttccag gatgttggaa taggggggag tagcagtgat
    2551  tacgttgtcc cggggaccca cgagttcgaa ccggggacgt tgtggacaca
    2601  atgctagtca attgagtcag ccaggcatat ggttgcaagc gctggggact
    2651  tagtccataa aaccactggt aaagagcctc cagtaggcag gcccgccttg
    2701  atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg
    2751  gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata
    2801  cggaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag
    2851  ctcgaggaat caaacctcgg cgttctaacc ccccatcggg ccgaaaacaa
    2901  ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca
    2951  gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc
    3001  atagagaagg ttgtggtggt gttcacgccc cacatcccgg acgatgctgg
    3051  cggagaggta gaaatcttgg tccacgacaa catgctacca cacctaaaca
    3101  gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata
    3151  gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc
    3201  gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg
    3251  caggcgcgag cccgttcagc ctgtacataa tgtgggaacc gaagatagag
    3301  tgcgtagcgc acaactatct gatgaggccc cccaaagcaa tgccaatttg
    3351  cagacatctg gtgaaggaca gtctgtcctc cctaaccctg actcaggggg
    3401  cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc
    3451  ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc
    3501  aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag
    3551  accgttagcc actacgccag acagtgcgat aactgaggtc gtctatgacc
    3601  cacagggtgc catcctgtgc aatttccaac ccttggcagg ggtgatccta
    3651  gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga
    3701  gtggttgata gacctctgtg taaggaaaca ggtgtgagac tggatcctgg
    3751  gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttcgggggta
    3801  accccaccgc cgacgtatca cctcacacgc tgttggccga taagccgagg
    3851  tgttggaacc gcaccactct ggaggttccc tctccttatg aggtggaggc
    3901  acagcacgcc ttaagtgtct gcgatccggc gttcacgtgc cggtggtccc
    3951  cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc
    4001  cagcagaaac caagtagcaa atggacgctg ctacctcgag cctagagtca
    4051  tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt
    4101  tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc
    4151  cc