Sequence of DPV Tobacco bushy top virus
Tobacco bushy top virus complete genome, isolate YWDu
ACC No: FM242700
Dated: 2009-10-12 | Length: 4152 | CRC: -594833949
ID FM242700; SV 1; linear; genomic RNA; STD; VRL; 4152 BP.
XX
AC FM242700;
XX
DT 12-OCT-2009 (Rel. 102, Created)
DT 12-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE Tobacco bushy top virus complete genome, isolate YWDu
XX
KW complete genome.
XX
OS Tobacco bushy top virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-4152
RA Li F.;
RT ;
RL Submitted (10-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL Li F., Department of Phytopathology, Yunnan Agricultural University, Key
RL Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan
RL Province, CHINA.
XX
RN [2]
RA Li F., Wei W., Chen R.H., Wu D.;
RT "Complete nucleotide sequence and genome organization of YWDu isolate of
RT tobacco bushy top virus";
RL Unpublished.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4152
FT /organism="Tobacco bushy top virus"
FT /isolate="YWDu"
FT /mol_type="genomic RNA"
FT /country="China:Yunnan, Dali, Weishan"
FT /db_xref="taxon:184020"
FT 5'UTR 1. .10
FT CDS 11. .958
FT /product="hypothetical protein"
FT /note="ORF1"
FT /protein_id="CAR85736.1"
FT /translation="MEFMNNVKRLLTMDFRPAKGVATREELRRAYDPTWELLITQARVT
FT SEVARQCEDWYTLAVPTTYRLPELAVEEAVREKSIAREVADRCLPDDPSPVAAQGPSPA
FT CLAESSTDSSTDAEPNGADEILGLPRPDTQFLPPWVERRYKALARHCPKDYTNWQIIPY
FT SGGPRILTEEDVLPVAEGVILLPPPPSKPTVLDTLRGLITRLSRVAGGVRSRPSTTRKE
FT PTAICVGVEQVAGEPMAYMNAHSVAMELRARYGVQPSTAANLQLGNRVAREILEKQCGA
FT TRDMVFILGHLATTLWFTPTVVDLALQCGPKDFC"
FT CDS 934. .2607
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2"
FT /protein_id="CAR85737.1"
FT /translation="MWAQGFLLGDVVARRGVETKVKTNIHPKIRVLRAARPRPVERVSY
FT QIDVVRPCADFGVHNNSLNNLIRGVNERVFYTDHKRKEPRRPSAGSFDKIDTSEIRAFR
FT VQPWTLEEVVNSYSGSQKVRYGQAVESLAVTPLSRNDARVKTFVKAEKINFTAKPDPAP
FT RVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVETGEIIAKKWKCFG
FT DPVCVGLDASRFDQHVSCDALRFTHSIYKRFVKGREVNKLLSWMYRNHALGSAKDGFVK
FT YEVEGCRMSGDMDTALGNCVLMVMMTRQLCKNLSIPHELMNNGDDCIVIFDRRHLTTFR
FT NAVEPFFQELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHISSIAKDCCSVIDW
FT EQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGAWKNEGLAWYRMGM
FT DLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKRARVCKPGEMVLVD
FT SLPPRHFNDYFQDVGIGGSSSDYVVPGTHEFEPGTLWTQC"
FT CDS 2757. .3470
FT /product="hypothetical protein"
FT /note="ORF3"
FT /protein_id="CAR85738.1"
FT /translation="MSTIINVNTHPQGRYGRGAAQRSIRGSDVKGARGIKPRRSNPPSG
FT RKQGGNDPTAATQKSRKNRQRPETVPPHETHGGTFIHREGCGGVHAPHPGRCWRRGRNL
FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL
FT RRRREPVQPVHNVGTEDRVRSAQLSDEAPQSNANLQTSGEGQSVLPNPDSGGTEKCNVE
FT SVCNNCDRAPTTNKW"
FT CDS 2773. .3507
FT /product="hypothetical protein"
FT /note="ORF4"
FT /protein_id="CAR85739.1"
FT /translation="MSTLIHKADTEEELLNALYGEVTLRELEESNLGVLTPHRAENKVV
FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKVVVVFTPHIPDDAGGEVEILVHDNM
FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS
FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT
FT ATGLPPPTSGEQDMEVVSHPPG"
FT 3'UTR 3508. .4152
XX
SQ Sequence 4152 BP; 996 A; 1086 C; 1193 G; 877 T; 0 other;
fm242700 Length: 4152 12-OCT-2009 Type: N Check: 1429 ..
1 aggttacgat atggagttca tgaacaacgt caagcgattg ctgacaatgg
51 atttcaggcc cgcaaagggc gtagcgactc gtgaggagct ccgtagagct
101 tatgatccca cgtgggagct cctcatcact caagcccgag tcacgtctga
151 agtggctcgg caatgcgagg attggtacac cctagctgtg ccaaccacct
201 accgccttcc agagttggcg gtggaagagg cagtgcgcga aaagtctata
251 gcgcgtgagg tggcagatcg gtgcctccct gatgacccgt cccctgtcgc
301 cgcgcagggg ccgtcgcctg cctgcctggc tgagagctca acagactcca
351 gcacagatgc cgagcccaat ggggccgacg agattctggg gctacctagg
401 ccagacaccc agttcttacc accgtgggtt gagaggcgtt acaaagcgtt
451 ggctcgccac tgcccgaagg attataccaa ctggcagatc ataccatact
501 ccggtggccc acgcattctc actgaagagg atgtgttgcc tgttgcggaa
551 ggcgtgatcc ttctgccccc gcccccatca aagcctacag tactggacac
601 gttgcgggga ttgattaccc gcctctctag agtggcaggg ggggtgagga
651 gtaggccgag caccacacga aaggagccca ctgccatctg cgttggagtc
701 gagcaggtgg ccggcgaacc catggcgtac atgaatgccc actccgtagc
751 catggagttg cgggcgaggt atggggttca gccctctaca gctgctaacc
801 tgcagcttgg aaaccgggtg gccagggaga tcctggaaaa gcaatgcgga
851 gccacccgtg acatggtgtt catcttgggg cacctcgcca ccaccttgtg
901 gttcactccc accgtggtgg acttggccct ccaatgtggg cccaaggatt
951 tttgctaggg gacgtagtcg ctcggagggg tgttgaaaca aaagtgaaaa
1001 ccaatatcca ccccaagatc cgagtgctca gagcggcacg cccccgaccc
1051 gtagaaagag tgtcgtacca aatcgacgtg gtacggccct gcgctgactt
1101 tggtgtccac aacaactccc ttaataattt gatacgggga gttaatgagc
1151 gggtgttcta cacagaccac aagaggaaag agccccgcag gccttcagct
1201 ggtagttttg acaagattga caccagcgaa attagagcat tcagggttca
1251 accgtggacc ctcgaggagg tcgtcaatag ctactcaggt agccagaagg
1301 tgaggtatgg ccaggctgtc gagtcgttag ccgtcacgcc cctctctaga
1351 aacgatgccc gggtcaaaac gtttgttaag gcagaaaaga tcaactttac
1401 cgccaagccc gacccggccc ctcgcgtaat ccagccgcgg gatccaaggt
1451 tcaatgcttg ctttgctaaa tatacaaagc ccttggaacc cctattgtac
1501 aagcagctgg gcaagctcta ccagttcccg tgcatcgcaa agggcttcaa
1551 tgccgtagaa accggtgaga taatagctaa gaagtggaag tgctttggcg
1601 accctgtctg tgtgggttta gacgcctccc ggtttgacca acatgtgtca
1651 tgcgatgcac tacggttcac ccacagcatt tacaagagat tcgtcaaggg
1701 cagggaagtt aacaaattac tttcctggat gtataggaat catgctttgg
1751 gtagtgcgaa ggacggattc gtcaagtatg aggtggaggg atgccgcatg
1801 agcggagaca tggacactgc cttgggcaac tgcgtcctga tggtcatgat
1851 gaccaggcag ttatgcaaaa acctctctat accgcacgaa ctgatgaata
1901 atggggatga ctgcatcgtg atatttgaca ggcgtcactt gactaccttt
1951 cggaatgcag ttgaaccatt ctttcaggaa ctgggtttta cgatgaaggt
2001 cgaggagccg gtctaccacc ttgaacgagt agacttttgc cagacccgcc
2051 ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata
2101 gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg
2151 gaacgccatt ggagaatgtg gcattgccgt ggctggtggt atacccatac
2201 acaacagctt cttgagatgg ctcctgagat caggtgagag caaccctgat
2251 ctcctgaagc atggcgcatg gaaaaatgag ggcctagcgt ggtaccggat
2301 gggcatggac ctatcccatg agagacacgt tagtgatgaa gcgcgcgcca
2351 gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag
2401 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag
2451 agtgtgtaaa cctggtgaaa tggtattggt tgattcactc ccaccgcggc
2501 actttaatga ttacttccag gatgttggaa taggggggag tagcagtgat
2551 tacgttgtcc cggggaccca cgagttcgaa ccggggacgt tgtggacaca
2601 atgctagtca attgagtcag ccaggcatat ggttgcaagc gctggggact
2651 tagtccataa aaccactggt aaagagcctc cagtaggcag gcccgccttg
2701 atgagtctta acgagtggac acccgggtag ccgcggacaa tgcccgacgg
2751 gtttcaatgt ctacgatcat aaatgtcaac actcatccac aaggcagata
2801 cggaagagga gctgctcaac gctctatacg gggaagtgac gttaagggag
2851 ctcgaggaat caaacctcgg cgttctaacc ccccatcggg ccgaaaacaa
2901 ggtggtaatg accccactgc tgccacccag aagtcaagga agaatcgcca
2951 gcgtcctgaa acggttccgc cccacgaaac acacgggggg acttttattc
3001 atagagaagg ttgtggtggt gttcacgccc cacatcccgg acgatgctgg
3051 cggagaggta gaaatcttgg tccacgacaa catgctacca cacctaaaca
3101 gcgttgggcc ccgcgtaaga tttccgatga gcggagggcc caggttgata
3151 gcattttatc ccccctactc gataccctta agttgtcaag tgaggggggc
3201 gccccggagc tacttcattg tatcggagta ctccggcgtg aacttcgtcg
3251 caggcgcgag cccgttcagc ctgtacataa tgtgggaacc gaagatagag
3301 tgcgtagcgc acaactatct gatgaggccc cccaaagcaa tgccaatttg
3351 cagacatctg gtgaaggaca gtctgtcctc cctaaccctg actcaggggg
3401 cactgaaaag tgcaatgtcg aatcggtatg caacaactgc gaccgggctc
3451 ccaccaccaa caagtggtga gcaggatatg gaggtagtgt cccatcctcc
3501 aggctaaatt ggacacaaaa cggagctaga tttagtgttg caattgctag
3551 accgttagcc actacgccag acagtgcgat aactgaggtc gtctatgacc
3601 cacagggtgc catcctgtgc aatttccaac ccttggcagg ggtgatccta
3651 gaggacgcgg gcattgactt gcctggggat gcttctagtt acataccgga
3701 gtggttgata gacctctgtg taaggaaaca ggtgtgagac tggatcctgg
3751 gaaacaggct gggatggtcc cgtaagttcg ggcggtgccc ttcgggggta
3801 accccaccgc cgacgtatca cctcacacgc tgttggccga taagccgagg
3851 tgttggaacc gcaccactct ggaggttccc tctccttatg aggtggaggc
3901 acagcacgcc ttaagtgtct gcgatccggc gttcacgtgc cggtggtccc
3951 cctagttaac gtggtgccac agtctgtggt aggggcagct ggtcggattc
4001 cagcagaaac caagtagcaa atggacgctg ctacctcgag cctagagtca
4051 tgggcccgca tcgacgtttg cggtaactca cagcgggcga taatagctgt
4101 tgagaatgtc ggttcctgac ttagcgggag atgagcactt tctctcgcgc
4151 cc