Sequence of DPV Maize dwarf mosaic virus
Maize dwarf mosaic virus partial polyprotein, isolate Sz0813, genomic RNA
ACC No: FM883193
Dated: 2010-01-05 | Length: 1298 | CRC: 1694595170
ID FM883193; SV 1; linear; genomic RNA; STD; VRL; 1298 BP.
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AC FM883193;
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DT 01-JUL-2009 (Rel. 101, Created)
DT 05-JAN-2010 (Rel. 103, Last updated, Version 2)
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DE Maize dwarf mosaic virus partial polyprotein, isolate Sz0813, genomic RNA
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KW .
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OS Maize dwarf mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1298
RA Petrik K.;
RT ;
RL Submitted (01-DEC-2008) to the EMBL/GenBank/DDBJ databases.
RL Petrik K., Department of Applied Genomics, Agricultural Research Institute,
RL Brunszvik u. 2, Martonvasar, 2462, HUNGARY.
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RN [2]
RA Petrik K., Sebestyen E., Gell G., Balazs E.;
RT "Natural insertions within the N-terminal region of the coat protein of
RT Maize dwarf mosaic potyvirus (MDMV) have an effect on the RNA stability";
RL Virus Genes 40(1):135-139(2010).
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FH Key Location/Qualifiers
FH
FT source 1. .1298
FT /organism="Maize dwarf mosaic virus"
FT /host="Sorghum halepense"
FT /isolate="Sz0813"
FT /mol_type="genomic RNA"
FT /country="Hungary:Szeged"
FT /collection_date="05-Jun-2008"
FT /PCR_primers="fwd_name: MDMV8198fwd, fwd_seq:
FT aaaccggtggytrctygaartgc, rev_name: MDMV3, rev_seq:
FT atcctaggttttttttttttttttttttttttttttgtc"
FT /db_xref="taxon:12203"
FT CDS <1. .1064
FT /codon_start=3
FT /product="polyprotein"
FT /db_xref="GOA:C6GZ06"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="UniProtKB/TrEMBL:C6GZ06"
FT /protein_id="CAT99484.1"
FT /translation="LEVQPFADLAKEGSAPYIAESALRNLYTGAKVSEDELNVYARQFF
FT DDLSDYLADEVIDVKHQAGENVDAGQKTEAQKESEKKAAEEKKAKEAEAKQKETKEKAT
FT EKTGEGGSTGKDKDVDAGTSGSVSVPKLKAMSKKMRLPQAKGKNILHLDFLLKYKPQQQ
FT DLSNTRATRAEFDRWYEAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVWTMMDG
FT DEQKTFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSPERYMPRYGLQRNLTDFSLA
FT RYAFDFYEISSRTPARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHTAGDVS
FT RNIHSLLGVQQGH"
FT mat_peptide <1. .188
FT /product="NIb"
FT mat_peptide 189. .1061
FT /product="CP"
FT 3'UTR 1065. .1298
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SQ Sequence 1298 BP; 421 A; 252 C; 314 G; 311 T; 0 other;
fm883193 Length: 1298 05-JAN-2010 Type: N Check: 4521 ..
1 tacttgaagt gcaacctttt gctgatttag caaaggaagg ttcagcaccg
51 tacatagccg agtcagccct gagaaattta tatactggtg ctaaggtttc
101 agaggatgaa ttgaatgttt atgcacgaca gttcttcgat gatctttcag
151 attatttggc tgacgaggtt atagacgtga agcatcaagc cggcgagaat
201 gttgatgctg ggcagaaaac tgaagcacag aaggagtcag aaaagaaagc
251 agctgaagaa aagaaagcaa aagaggctga agctaagcaa aaggaaacaa
301 aggagaaagc aactgagaaa actggcgaag gcgggtccac aggaaaagac
351 aaagacgtgg acgctggaac ctcaggctca gtatcagtac ctaagctcaa
401 agccatgtcc aaaaagatgc gtttgcctca agcaaaagga aagaatatcc
451 ttcacctcga ctttcttttg aaatataaac cacaacaaca agatttatca
501 aacactcgag caactagggc tgaatttgat agatggtatg aagcagtgca
551 gaaagagtac gaacttgatg atacacagat gacggttgtc atgagtggat
601 taatggtatg gtgcatcgaa aatggctgct caccgaacat caatggtgtc
651 tggaccatga tggacggaga tgaacagaaa acattccctt taaaaccagt
701 tattgagaat gcatctccaa ctttcagaca aattatgcac cactttagtg
751 atgcagctga agcatacatt gagtatagaa attcaccaga aagatatatg
801 ccgagatatg gacttcagcg aaacttaacc gactttagcc ttgcacgcta
851 tgcatttgat ttttacgaga tatcatctcg aactccagca cgtgcaaagg
901 aagcccacat gcagatgaag gctgcagcag tccgtggttc aaacacacgg
951 atgtttggtc ttgatgggaa cgtcggagaa tcccaagaaa atacagaacg
1001 ccacacagct ggtgacgtta gtcgcaacat acactccctt ttgggagtcc
1051 agcaggggca ttgatacggg gttcaacttt tacgcagtaa tttagtaata
1101 tataagtaag ctattgtggt gaggttgtac ctcgttagtt ttatatatat
1151 attatgctac gtacctacta tgtctgcaag tgagtgaggt tgtacctcga
1201 cacttatagt gggcactatt actagcttcg aatcacgaga cggacgatcc
1251 attgagtggt tctaccacga ggatgcagcg agtctcgtgg tgagagcc